| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,530,481 | G→T | 5.5% | R104L (CGT→CTT) | greB → | transcript cleavage factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,530,481 | 0 | G | T | 5.5% | 1285.0 / 34.6 | 333 | R104L (CGT→CTT) | greB | transcript cleavage factor |
| Reads supporting (aligned to +/- strand): ref base G (154/160); new base T (6/13); total (160/173) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 339 total aligned reads displayed.
TGCGTGAAATCGACCGTCGCGTGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATGCTATC > CP009273/3530334‑3530629 | tgctttaaaGCGACCGGCGCGGGCGATAACTAACAAACGGCCTGTAAAATAAAAAAATCGTCTATTACCCCCCACAGCCGCATGGAAATTTCTTTTTGGGCGGGGGGGTGGTTTTTGAACACGACGATGGCGTGACTCACCGTTTCCGt < 2:3083329/143‑1 (MQ=255) cGTGAAATCGACCGTCGCGTGCGCTATCTAAATAAATGCCTGTAAAATCAAAAAATCGTCTATTACTCCCCACAGCAGTATGGAAAATTATTTTTTGGCGGGTGGTTGTATTTTGAAAACGACGATGGCGTGACTCACCGTTTCCGTAt < 1:1268245/149‑1 (MQ=255) gTGAAATCGACCGTCGCGTGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTAtt > 1:4201173/1‑149 (MQ=255) gTGAAATCGACCGTCGCGTGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTAtt > 1:1433466/1‑149 (MQ=255) gTGAAATCGACCGTCGCGTGCGATATCTCACTAAAGGCCTGGAAAATCACAAAATCGTCGATTACTCCCCACAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTTAAAACGACGATGGCGTGACTCACCGTTTCCGTAtt < 1:4377310/149‑1 (MQ=255) aaaTCGACCGTCGGGTGCGCTATCTCACTAAAGGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCCGGAAGGAAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTc < 2:1265116/149‑1 (MQ=255) aaaTCGACCGTCGCGTGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGGGGAGATTGAACACGACGATGGCGTGACTCACCGTTTCCGTATTGTc < 2:3853025/149‑1 (MQ=255) aaaTCGACCGGCGCGTGCGCTATCTCAATAATTGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCCGGATGGAAAAGTCTTTTTTGGCGCGTGGGTGGATATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTc < 2:1854625/149‑1 (MQ=255) aaTCGCCGGTCGCGTGCGCTATCACAATAATTGCCTGGAAAATCTCAAAAGCGTCGATTACTCCCCCCCGCCGGAAGGAAACGTCTTTTTTGGCGGGTGGGTGGTTATTTAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCg < 2:492017/149‑1 (MQ=255) tCGACCGTCGCGTGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGc > 1:1767305/1‑149 (MQ=255) cccGTCGCGTGCGCTATCTCACTAAAGGCCTGTAAAATCACAAAATCGTCGATTACCCCCCTCAGCAGGAAGGCAACGTCTTTTTTGGCGGGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTAc < 1:4780523/148‑1 (MQ=255) ccGTCGCGTGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACg > 2:4021038/1‑149 (MQ=255) cGTCGCGTGCGCTATCTCACTAAATGCCTGTAAAATCTCAAAATCGACGATTACCCCCCTCAGCCGGAAGGCAATTTCTTTTTTGGCGCGTGGGTGGTGATTTAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGa < 1:2627411/149‑1 (MQ=255) gTCGCGTGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGAt > 2:2011566/1‑149 (MQ=255) gggTGCGCTATCTAACTAAATGCCTGGAAATTATCAAAATCGTCGATTACGCCCCTCCGCTGTAAGGAAATTTCTTTTTGGGCGGGTGGGTGTATATTTAACACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGaa < 1:3594573/147‑1 (MQ=255) cgTGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGACGGAAAAGTCTTTTTTGGCGCGTGGGTGGAGATTTAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGaaa < 2:3263383/149‑1 (MQ=255) cgTGCGATATCACACTAAATGCCTGGAAAATCAAAAAATCGTCGATTACTCCCCTCACCAGGAAGGAAAATTCTTTTTTGGCGCGTGGGTGTATTTTGAACACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGaaa < 1:3761141/149‑1 (MQ=255) tGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAAtt > 1:1018823/1‑149 (MQ=255) tGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAAtt > 1:2828039/1‑149 (MQ=255) cgcTAACTCACTAACTGCCTGGAAAATCTCAAAATGGTCGATTACGCCCCTCAGCCGGAAGGAAATGTGTTTTTGGGGGCGTGGGTGGAGATTTAACACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAAtttt < 2:1769445/149‑1 (MQ=255) gcTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAAttttt > 1:1633280/1‑149 (MQ=255) cTATCTCACTCAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACGCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTg > 1:234016/1‑149 (MQ=255) cTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTg > 1:1330917/1‑149 (MQ=255) taactcACTAAATGCCTGTAAAATCTCAAACTCGTCTATTACTCCCCACAGCAGGAAGGCAAAGAATTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTgg < 2:3036354/146‑1 (MQ=255) aTCTCACTAAATGCCTGGAAAATTTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGc > 2:5142319/1‑149 (MQ=255) aTCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGc > 2:2674120/1‑149 (MQ=255) tctcACTAAATGCCTGGAAAATCTCAAAATCGTCTATTACTCCCCTCAGCAGTAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGcc < 2:416694/149‑1 (MQ=255) tcACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTGGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGt < 2:2262350/149‑1 (MQ=255) cACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTa > 1:4590837/1‑149 (MQ=255) aaCTAAATGCCTGGAAAATCAAAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTATTTTTTGGCGCGTGGGTGGATATTTAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTa < 2:711487/148‑1 (MQ=255) tAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAg > 2:5226576/1‑149 (MQ=255) aaTGCCTGGAAAATCTCAAAATCGTCTATTCCTCCCCTCAGCAGGATGTAAAAGTCTTTTTTGGCGCGTGGGTGTTGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGAt < 2:819179/149‑1 (MQ=255) aaTGCCTGCAAAATCTCAAAATCGTCGATTACTCCCCTCCGCCGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGAt < 2:1385478/149‑1 (MQ=255) aTGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGAtt > 1:453670/1‑149 (MQ=255) gCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTAc > 2:3349370/1‑149 (MQ=255) cctttaaaaTCTCAAAAGCGTCGATTACCCCCCTCCGCTGGACGCAAATGTTTTTTTGGGGGGGTGGGTGTTTATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACa < 1:3164798/144‑1 (MQ=255) cTGCAAAATCTAAAATTCGTCTTTTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTGGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACAt < 2:5071246/149‑1 (MQ=255) ggAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACAtct > 2:1895683/1‑149 (MQ=255) aaaaTCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATctct > 2:371509/1‑149 (MQ=255) aaaTCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTa > 2:1058978/1‑149 (MQ=255) aaTCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTAt < 2:2556411/149‑1 (MQ=255) aaaaaTCGTCTATTACTCCCCTCCGATGGATGGAAATGTTTTTTTTGGGGGGTGGGTGTTTATTTAACACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGAtt < 1:3944495/148‑1 (MQ=255) aaaTCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTcc > 1:4314162/1‑149 (MQ=255) aaTCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTcac > 1:2845544/1‑147 (MQ=255) atggtctATTACGCCCCTCAGCTGTAAGGAAATGTCTTTTTGGGCGCGGGGGTGGAGATTGAACACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTcccc < 2:3979622/146‑1 (MQ=255) tcgtcgATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGGGTGGGTGGAGATTTAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCg < 1:2985263/149‑1 (MQ=255) gtcgATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGAt > 2:3917207/1‑149 (MQ=255) tcgATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATg > 2:3827581/1‑149 (MQ=255) cgATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATgg > 2:934085/1‑149 (MQ=255) tACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCcg > 1:2246296/1‑149 (MQ=255) tCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCgcgc > 2:4429325/1‑149 (MQ=255) cccTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCAt > 1:2519420/1‑149 (MQ=255) ccTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCAtt > 2:4827524/1‑149 (MQ=255) ccTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCAtt > 1:1772086/1‑149 (MQ=255) tCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGAGGGCCCGCGCATTGc > 2:1070045/1‑149 (MQ=255) gcagGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGa > 2:3678525/1‑149 (MQ=255) atggCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGaaaaaa < 2:4757062/147‑1 (MQ=255) aaGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGaaaaaa > 1:5018272/1‑149 (MQ=255) ggCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAaaga > 1:920155/1‑149 (MQ=255) gCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAaagaa > 2:1683650/1‑149 (MQ=255) cAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAaagaag > 2:1128212/1‑149 (MQ=255) aaaGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGt > 1:1945841/1‑149 (MQ=255) aaaGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGt < 1:3883390/149‑1 (MQ=255) aaGTCTTTTTTGGCGCGTGGGTGGATATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCCCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTc < 2:1608195/149‑1 (MQ=255) aaGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTc > 1:701497/1‑149 (MQ=255) gTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCgg > 2:3424806/1‑149 (MQ=255) tatttttgGGCGGGTGGGTGTAGATTCAACACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGc < 1:1797194/147‑1 (MQ=255) tttttGGCGGGTGGGTGGTTTTTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGAt < 2:1931857/149‑1 (MQ=255) gcgcGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCg > 2:4981917/1‑149 (MQ=255) cgggtgggtggAGATTTAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCgg < 2:4566456/146‑1 (MQ=255) cgcgTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCgg < 2:2095960/149‑1 (MQ=255) gtgggtggAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCggtgg < 1:4260550/149‑1 (MQ=255) gggtggAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCNCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGgtggtg < 1:196819/149‑1 (MQ=255) gtggATATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGaa < 2:387744/149‑1 (MQ=255) gagaTTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATAc < 2:1478915/149‑1 (MQ=255) aTTTAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATAcccc < 1:1322085/149‑1 (MQ=255) aTTGAACACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATAcccc < 1:1526657/149‑1 (MQ=255) aTTCAACACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATAcccc < 2:3139504/149‑1 (MQ=255) aaaCGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCg > 1:3753099/1‑149 (MQ=255) aaaCGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCg > 1:3427819/1‑149 (MQ=255) aaaCGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTATGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCg > 2:1232450/1‑149 (MQ=255) aaCGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCACTGCCgg > 2:3006426/1‑149 (MQ=255) acgaTGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGaa > 1:1175071/1‑149 (MQ=255) aTGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCg < 2:1297093/149‑1 (MQ=255) aTGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCg < 2:2694805/149‑1 (MQ=255) gCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGc < 2:3551818/149‑1 (MQ=255) cGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCt < 1:4130394/149‑1 (MQ=255) gTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTg < 1:449827/149‑1 (MQ=255) gACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGt > 2:2245198/1‑149 (MQ=255) cTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCt > 2:4289798/1‑144 (MQ=255) cTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTAt < 2:2436856/149‑1 (MQ=255) tCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATg < 2:4099337/149‑1 (MQ=255) tCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCACGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATg > 1:349175/1‑149 (MQ=255) tCACCGTTTCCGGATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCACGCATTGCGGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATg > 1:2140132/1‑149 (MQ=255) aCCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGtt < 1:2875647/149‑1 (MQ=255) ccGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTa < 2:4522154/149‑1 (MQ=255) cGTGTCCGTATTGTCGGCTACGATGAAATTTTGGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTaa < 1:5086173/149‑1 (MQ=255) tttCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATg > 2:2836850/1‑149 (MQ=255) ccGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATGCTa < 2:3496011/149‑1 (MQ=255) gTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATGCTATc < 1:3993382/149‑1 (MQ=255) | TGCGTGAAATCGACCGTCGCGTGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTCTTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATGCTATC > CP009273/3530334‑3530629 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |