Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 4,562,043 C→A 88.0% intergenic (+311/‑188) yjiS → / → yjiT DUF1127 family protein/pseudogene

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092734,562,0430CA88.0% 714.0 / 91.4 248intergenic (+311/‑188)yjiS/yjiTDUF1127 family protein/pseudogene
Reads supporting (aligned to +/- strand):  ref base C (15/15);  new base A (98/120);  total (113/135)
Fisher's exact test for biased strand distribution p-value = 6.97e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01

Only 100 of 248 total aligned reads displayed.

ACTTGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAATTAGAAATGTTG  >  CP009273/4561898‑4562188
                                                                                                                                                 |                                                                                                                                                 
aCTTGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAgg                                                                                                                                                <  2:4298542/149‑1 (MQ=255)
     tgtTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATa                                                                                                                                           <  1:145695/149‑1 (MQ=255)
      gtTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATaa                                                                                                                                          >  1:3848413/1‑149 (MQ=255)
       ttttttGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATaaa                                                                                                                                         <  2:4736018/149‑1 (MQ=255)
       ttttttGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATaaa                                                                                                                                         <  1:1544084/149‑1 (MQ=255)
          tttGACTGACTTTACAACTCTCATTATTCGCGATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGa                                                                                                                                      <  2:1201039/149‑1 (MQ=255)
             gactgactTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGtt                                                                                                                                   >  1:4246302/1‑149 (MQ=255)
                 gactTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGa                                                                                                                               >  1:555581/1‑149 (MQ=255)
                  actTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGAt                                                                                                                              <  1:2295561/149‑1 (MQ=255)
                   ctTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGAtt                                                                                                                             <  2:3659335/149‑1 (MQ=255)
                     ttACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTaa                                                                                                                           <  1:2759559/149‑1 (MQ=255)
                     ttACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTATTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTaa                                                                                                                           <  1:133592/149‑1 (MQ=255)
                        cAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAg                                                                                                                        >  2:1635944/1‑149 (MQ=255)
                        cAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAg                                                                                                                        >  2:4634003/1‑149 (MQ=255)
                        cAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAg                                                                                                                        >  2:2472253/1‑149 (MQ=255)
                         aaCTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGa                                                                                                                       >  1:754436/1‑149 (MQ=255)
                             ctcATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGt                                                                                                                   >  2:1286500/1‑149 (MQ=255)
                              tcATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGtt                                                                                                                  <  2:3392973/149‑1 (MQ=255)
                               cATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATATATGGTTg                                                                                                                 >  2:5217628/1‑149 (MQ=255)
                                attattCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGa                                                                                                                <  2:4620205/149‑1 (MQ=255)
                                attattCGCTATTGTGCAGTTTCTATAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGa                                                                                                                <  1:4599161/149‑1 (MQ=255)
                                  tattCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGata                                                                                                              >  1:4379659/1‑149 (MQ=255)
                                    ttCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATc                                                                                                            >  2:2315496/1‑149 (MQ=255)
                                    ttCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATc                                                                                                            >  2:1373261/1‑149 (MQ=255)
                                    ttCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATc                                                                                                            <  2:2886703/149‑1 (MQ=255)
                                      cGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCAt                                                                                                          >  2:3990458/1‑149 (MQ=255)
                                      cGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCAt                                                                                                          <  1:1953719/149‑1 (MQ=255)
                                      cGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCAt                                                                                                          <  1:1953520/149‑1 (MQ=255)
                                       gCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCAtt                                                                                                         >  2:220776/1‑149 (MQ=255)
                                         tATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCAtttt                                                                                                       <  1:3859372/149‑1 (MQ=255)
                                         tATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCAtttt                                                                                                       <  1:2098918/149‑1 (MQ=255)
                                           ttGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTa                                                                                                     <  1:715781/149‑1 (MQ=255)
                                           ttGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTa                                                                                                     >  2:486906/1‑149 (MQ=255)
                                           ttGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTa                                                                                                     >  2:487044/1‑149 (MQ=255)
                                                cAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTaa                                                                                                <  2:3884961/149‑1 (MQ=255)
                                                  gTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTaaaa                                                                                              >  1:3641565/1‑149 (MQ=255)
                                                    ttCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAAtt                                                                                            <  2:4364232/149‑1 (MQ=255)
                                                       tctAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGAt                                                                                         >  2:1678255/1‑149 (MQ=255)
                                                       tctAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGAt                                                                                         <  1:263431/149‑1 (MQ=255)
                                                       tctAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGAt                                                                                         <  1:4530071/149‑1 (MQ=255)
                                                       tctAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGAt                                                                                         >  2:3744817/1‑149 (MQ=255)
                                                        ctAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGAtt                                                                                        <  1:3006438/149‑1 (MQ=255)
                                                         tAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGAttt                                                                                       >  2:4143103/1‑149 (MQ=255)
                                                         tAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGAttt                                                                                       <  1:3586686/149‑1 (MQ=255)
                                                         tAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGAttt                                                                                       >  2:2349268/1‑149 (MQ=255)
                                                         tAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGAttt                                                                                       <  1:1121890/149‑1 (MQ=255)
                                                          aaTTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTta                                                                                      <  2:3798540/149‑1 (MQ=255)
                                                            ttGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTtata                                                                                    <  2:3853315/149‑1 (MQ=255)
                                                               ttttATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTa                                                                                 <  1:4645290/149‑1 (MQ=255)
                                                                tttATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTGAAATTGATTTATAGTAt                                                                                <  2:1698650/149‑1 (MQ=255)
                                                                    taCCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGAc                                                                            >  1:2449762/1‑149 (MQ=255)
                                                                     aCCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGAcc                                                                           >  2:2911046/1‑149 (MQ=255)
                                                                      cccTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCt                                                                          >  2:4016352/1‑149 (MQ=255)
                                                                      cccTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCt                                                                          <  1:487012/149‑1 (MQ=255)
                                                                         tGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGaa                                                                       >  2:3295253/1‑149 (MQ=255)
                                                                          ggAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCTACCTGaaa                                                                      >  2:3119693/1‑149 (MQ=255)
                                                                          ggAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTAATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATATTATCGACCTGata                                                                      >  2:745782/1‑147 (MQ=255)
                                                                           gAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGaaaa                                                                     <  1:942911/149‑1 (MQ=255)
                                                                           gAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGaaaa                                                                     >  1:974968/1‑149 (MQ=255)
                                                                           gAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATAGACCTGaaaa                                                                     >  2:4837589/1‑149 (MQ=255)
                                                                             aaGTTAAATGTCAGCTACTGAATACTTTTTGAGTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGAGTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGaaaaaa                                                                   >  2:3616986/1‑149 (MQ=255)
                                                                               gTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATa                                                                 >  1:1488367/1‑149 (MQ=255)
                                                                                  aaaTGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAgtt                                                              >  2:1893951/1‑149 (MQ=255)
                                                                                  aaaTGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAgtt                                                              <  2:3038534/149‑1 (MQ=255)
                                                                                  aaaTGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAgtt                                                              >  1:2861488/1‑149 (MQ=255)
                                                                                  aaaTGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAgtt                                                              <  2:5152882/149‑1 (MQ=255)
                                                                                   aaTGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAgttg                                                             <  1:305989/149‑1 (MQ=255)
                                                                                    aTGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAgttgt                                                            <  2:717847/149‑1 (MQ=255)
                                                                                     tGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAgttgtt                                                           <  1:1139965/149‑1 (MQ=255)
                                                                                     tGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAgttgtt                                                           >  1:1798754/1‑149 (MQ=255)
                                                                                      gTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGttgttg                                                          <  2:1135425/149‑1 (MQ=255)
                                                                                       tCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTgc                                                         <  1:709589/149‑1 (MQ=255)
                                                                                          gCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTgccgc                                                      >  2:4245954/1‑149 (MQ=255)
                                                                                          gCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTgccgc                                                      <  2:1053109/149‑1 (MQ=255)
                                                                                           cTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTgccgcc                                                     <  1:1686296/149‑1 (MQ=255)
                                                                                           cTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCACTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTgccgcc                                                     <  1:2393217/149‑1 (MQ=255)
                                                                                             aCTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTg                                                   <  1:2697899/149‑1 (MQ=255)
                                                                                                 aaTACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTa                                               >  2:3039043/1‑149 (MQ=255)
                                                                                                     cTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACta                                           >  1:2793371/1‑149 (MQ=255)
                                                                                                            aTTGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAata                                    <  1:3009905/149‑1 (MQ=255)
                                                                                                              tGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATAtt                                  <  2:93653/149‑1 (MQ=255)
                                                                                                              tGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATAtt                                  <  2:93300/149‑1 (MQ=255)
                                                                                                              tGTTTGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATAtt                                  <  2:2395784/149‑1 (MQ=255)
                                                                                                                tttGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCt                                <  2:2028706/149‑1 (MQ=255)
                                                                                                                 ttGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTg                               >  2:3358438/1‑149 (MQ=255)
                                                                                                                 ttGAGATTTATTTTCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTATg                               >  1:758751/1‑149 (MQ=255)
                                                                                                                           ttttCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTtttc                     <  2:1455366/149‑1 (MQ=255)
                                                                                                                            tttCATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTtttct                    <  1:1906245/149‑1 (MQ=255)
                                                                                                                               cATTTGAAATTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTtttctttc                 <  1:2911046/149‑1 (MQ=255)
                                                                                                                                aTTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCa                >  1:4187492/1‑149 (MQ=255)
                                                                                                                                     aaaTTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAATTa           <  1:4021264/149‑1 (MQ=255)
                                                                                                                                       aTTATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAATTAGa         >  2:350242/1‑149 (MQ=255)
                                                                                                                                        ttATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAATTAGaa        >  1:482527/1‑149 (MQ=255)
                                                                                                                                        ttATAAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAATTAGaa        >  1:1444490/1‑149 (MQ=255)
                                                                                                                                          ataAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAATTAGAAAt      <  1:4634003/149‑1 (MQ=255)
                                                                                                                                          ataAAATAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAATTAGAAAt      <  1:5031673/149‑1 (MQ=255)
                                                                                                                                             aaaTAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAATTAGAAAtgtt   >  1:2286150/1‑149 (MQ=255)
                                                                                                                                             aaaTAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAATTAGAAAtgtt   >  1:2131335/1‑149 (MQ=255)
                                                                                                                                             aaaTAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAATTAGAAAtgtt   >  2:2562554/1‑149 (MQ=255)
                                                                                                                                              aaTAAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAATTAGAAAtgttg  >  1:1833133/1‑149 (MQ=255)
                                                                                                                                                 |                                                                                                                                                 
ACTTGTGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTTGAGATTTATTTTCATTTGAAATTATAAAATCAGGTGATAAATGAGTTGTGATTAATAGATGGTTGATATCATTTTTATCTAAAATTGATTTATAGTATCGACCTGAAAAAATAGTTGTTGCCGCCTGAGTAACTATACAATATTCTGAAAGGTTTTCTTTCAAATTAGAAATGTTG  >  CP009273/4561898‑4562188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: