mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4618548 | 319 (1.070) | 12 (0.050) | 9/244 | NT | 4.3% | noncoding (37/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | CP009273 | 4618665 = | 256 (0.970) | intergenic (+301/+7) | nadR/yjjK | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor/putative transporter subunit of ABC superfamily: ATP‑binding component | |||||
| * | ? | CP009273 | = 4532507 | 246 (0.830) | 7 (0.030) | 4/258 | NT | 2.7% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 275 (0.990) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | 4532499 = | 247 (0.830) | 8 (0.030) | 6/258 | NT | 3.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 275 (0.990) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | 3179455 = | NA (NA) | 5 (0.020) | 4/276 | NT | 1.9% | intergenic (+7/‑91) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| ? | CP009273 | = 3761131 | 263 (0.880) | pseudogene (551/945 nt) | rhsJ | Rhs‑family protein | |||||
| * | ? | CP009273 | 2989720 = | NA (NA) | 8 (0.030) | 7/276 | NT | 2.9% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | CP009273 | 3360461 = | 265 (0.890) | coding (177/717 nt) | yhcF | putative transcriptional regulator | |||||
| * | ? | CP009273 | 1716873 = | 265 (0.890) | 4 (0.010) | 4/254 | NT | 1.6% | coding (496/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump |
| ? | CP009273 | = 1716869 | 243 (0.890) | coding (492/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump | |||||
| * | ? | CP009273 | = 361823 | 325 (1.090) | 4 (0.010) +TTAATTAA |
3/260 | NT | 1.4% | coding (831/834 nt) | mhpR | mhp operon transcriptional activator |
| ? | CP009273 | 4033991 = | 272 (0.910) | noncoding (115/120 nt) | rrfA | 5S ribosomal RNA of rrnA operon | |||||
| * | ? | CP009273 | = 312810 | 273 (0.920) | 3 (0.010) | 3/276 | NT | 1.1% | pseudogene (71/684 nt) | ykgA | pseudogene, AraC family;putative regulator; Not classified; putative ARAC‑type regulatory protein |
| ? | CP009273 | = 1463497 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||