| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 361823 | 218 (0.900) | 22 (0.100) +TTAATTAA |
13/262 | NT | 10.1% | coding (831/834 nt) | mhpR | mhp operon transcriptional activator |
| ? | CP009273 | 4033991 = | 200 (0.830) | noncoding (115/120 nt) | rrfA | 5S ribosomal RNA of rrnA operon | |||||
GCGGGAAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCGCCATTCGATGGTGTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/361678‑361823‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTG > CP009273/4033991‑4034059 |||||||| gctGGAAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAA < 1:1023638/147‑1 ggtAAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATATCGTTACTGGTTTCACAGTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATCCCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATT < 1:2737659/147‑1 ggtAAAAGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATT < 1:776767/147‑1 gatACGGTCTGATAAGAGACCCCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAA < 2:4628393/147‑1 aatCGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCAAATTCCCCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAA < 1:4338983/147‑1 actgtaTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACAGTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGG < 1:1837437/144‑1 gggCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTGCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCAGTCGATGGTGTCAAGTAAGTCAAGGCA > 1:1491892/4‑150 tcgGATAAGAGACACCGGCAGACTCTGCGACATCGTATAACGTTACTGGGTTCACATTCACCACCCTGAATTGACTCTCGTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATC < 2:4854325/147‑1 tcaGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATC < 2:3095992/147‑1 tcaGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATC < 2:2117563/147‑1 gaaAAGAGACACCGGCATACTAAGCGACAACGTATAACGTTACAGGTTTCACATACACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGACATACCGCGAAAGGATTTGCACCAATCGAGGGGGTCAAGTAATTAAAGGCATCAAA > 2:2342912/4‑150 attAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGTATTGACTCTCTTCCGGGAGCTATCTTGACTTACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCAAAT < 1:3709323/147‑1 atcAGAGACACCGGCACACGCAGCGACATCGTCTAACGTTACGGGTTTCACAGTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGAGGGTGTCAATTAATTAAAGGCATCAAct < 2:2911631/147‑3 acaGGCATACTCTGCTACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTGTTCCGGGCTCTTTCATGCCATACCGCGAAATGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATAATATAAAACGAAA < 2:4901586/147‑1 acaGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCAAATAAAACGAAA < 1:1310709/147‑1 cagACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGTCTCTCTTCCGGGCGCTATCCTGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGGCAATGAATTCAAGGCCTCATATTAAACGAAAGGCTC > 1:3389056/4‑150 cagACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATGCGATGGTGTCAATTAATTAAAGGCATCAAATAAAACGAAATGCTC > 1:1520877/4‑150 atcCTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGACTTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAAGTAATTATAGGCATCAAATAAATCGCAAGGCTCA > 1:3758121/4‑150 actcacCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCAAATAAAACGAAAGGCTCAGT > 1:2738886/7‑150 GCGACATCGTATAACGTTACTGGTTTCACATTCAGCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGATTGGTTTTTCACCAGTCGAGGGTGTCAATGACTTAAAGGCATCAAATTAAAAGAACGGGTCAGTCGGcg > 1:905939/1‑148 GCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCAAATAAAACGAAAGGCTCAGTCGGAA < 2:929986/150‑1 GACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCCTTCGAGGGGGTCCATTCATTAAAGGCATCAAATAAAACGAAAGGCTCAGTCGGAGGA > 2:4975321/1‑150 CATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGATATCATGCCATACCGCGAAAGGGTGTGCACCAGTCGGGGGGGTCACTTAATTAAAGGCATCAAATAATACGAAAGGCTCTGGCGGAAGACT > 2:45591/1‑150 ataGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAG < 2:3702009/111‑1 tacCGTGACTGGTGTCACATGCACCCCCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGTTGGTGTCATTTAATTAAAGGCATCAAATAAAACGAAAGGCTCAGTCGTAAGACTGGGCCTT < 2:4277736/147‑1 TAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATGAATTAAAGGCATCAAATAAAACGTAAGGCTCAGTCGGAAGTCGGGGGCTT > 1:4415351/1‑150 AACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGGAAGGTTTTGCTCCATTCGAGGGGGTCAATTAATTAAAGGCATCAAATAAAACGCAGGGCTCCGGCGGCAGCCTGGGCCTgg > 2:2959836/1‑148 cttGTTTCACATTCACCACCCTGATTTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAATGTTTTGCACCATTCGATGGTGTCAATTATTTAAAGGCATCAAATAAAACGAAAGGCTGAGTCGTAAGACTGGGCCTTTCGTTTTA < 2:4740595/147‑1 ATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGGGGCCATTAAGTAACGGCATCAAATAACACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGGTGTATCTGggggtt > 2:3915624/1‑144 ACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAATGGCATCAAATAAAGCGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGGTTTATCTGGTGTTTGTCGGTG > 1:980211/1‑150 |||||||| GCGGGAAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCGCCATTCGATGGTGTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/361678‑361823‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTG > CP009273/4033991‑4034059 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |