| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,640,634 | G→T | 22.0% | intergenic (+175/‑28) | ydfV → / → flxA | Qin prophage; uncharacterized protein/Qin prophage; uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,640,634 | 0 | G | T | 22.0% | 474.9 / 111.8 | 201 | intergenic (+175/‑28) | ydfV/flxA | Qin prophage; uncharacterized protein/Qin prophage; uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base G (66/90); new base T (14/31); total (80/121) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.26e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 205 total aligned reads displayed.
CATGCGGCAGAAAATTATTGCCGAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGAAAAGCTTGGGAA > CP009273/1640490‑1640783 | cGGCAGAAAATTATTGCCGAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCtt < 1:1344255/150‑1 (MQ=255) cGGCAGAAAATTATTGCCGAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCtt < 2:5162777/150‑1 (MQ=255) ggCAGAAAATTATTGCCGAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCttt < 1:4563285/150‑1 (MQ=255) gAAAATTATTGCCGAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTa > 2:249305/1‑150 (MQ=255) gAAAATTATTGCCGAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTa > 2:5102937/1‑150 (MQ=255) gAAAATTATTGCCGAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTa < 2:2285090/150‑1 (MQ=255) aaaaTTATTGCCGAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTaa < 1:240751/150‑1 (MQ=255) ttGCCGAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGgaga > 1:225597/1‑150 (MQ=255) ttGCCGAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGgaga < 2:1235924/150‑1 (MQ=255) tGCCGAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGaa < 2:1257579/150‑1 (MQ=255) gAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCt < 2:1569820/150‑1 (MQ=255) aaCGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTa < 1:1156129/150‑1 (MQ=255) cGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTAtg < 1:4921026/150‑1 (MQ=255) cGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTAtg < 1:2341014/150‑1 (MQ=255) cGTTTACCACTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTAtg < 2:2623060/150‑1 (MQ=255) ttACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTAtgtct < 1:3960893/150‑1 (MQ=255) tACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTAtgtctg < 1:4462830/150‑1 (MQ=255) ccTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTcac < 1:3217446/150‑1 (MQ=255) cTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTATAAGGAGAACTCTATGTCTGTcaca > 2:4137277/1‑150 (MQ=255) gTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAAt > 1:2977142/1‑150 (MQ=255) gTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAAt > 1:5065565/1‑150 (MQ=255) gTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAAt < 1:2761665/150‑1 (MQ=255) caaGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAgg > 1:92997/1‑150 (MQ=255) aaGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAggg > 2:2023554/1‑150 (MQ=255) ttACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATa > 1:4620990/1‑150 (MQ=255) tACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATAc > 2:1112805/1‑150 (MQ=255) tACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATAc < 1:4322148/150‑1 (MQ=255) aCTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATAcc < 2:3468668/150‑1 (MQ=255) cTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCt < 2:442081/150‑1 (MQ=255) tttCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTc > 1:4269323/1‑150 (MQ=255) ttCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCa > 1:377610/1‑150 (MQ=255) ttCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCa < 1:2274400/150‑1 (MQ=255) cTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAAc > 2:3379658/1‑150 (MQ=255) tGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAAcc > 2:3923526/1‑150 (MQ=255) tGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAAcc < 2:1985414/150‑1 (MQ=255) gAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCg > 1:259657/1‑150 (MQ=255) ggCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGtt < 1:1403708/150‑1 (MQ=255) ggCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGtt < 1:1363101/150‑1 (MQ=255) gcgcCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTAtt < 2:4645883/150‑1 (MQ=255) cAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCaa < 1:2003027/150‑1 (MQ=255) cccGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAaaca > 1:763886/1‑150 (MQ=255) cgcgAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAaacaac < 2:1678142/150‑1 (MQ=255) cgcgAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAaacaac < 1:1265218/150‑1 (MQ=255) cgcgAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAaacaac < 2:3975660/150‑1 (MQ=255) cgcgAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAaacaac < 1:2422188/150‑1 (MQ=255) cgcgAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAaacaac < 2:4271382/150‑1 (MQ=255) gAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTcc < 2:4321243/150‑1 (MQ=255) aGGAAAACAATCTGAACATCAAACAATTAATGACACAGGAAATAAGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAACGAGAAATCTATGTCTGTCACAATTCAGGGAAATACATCAACCGTTATTTCAAACAAATcct > 2:665738/1‑149 (MQ=255) aGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCg > 2:5091648/1‑150 (MQ=255) ggAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGc > 1:3918533/1‑150 (MQ=255) aCAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCgg > 1:47318/1‑150 (MQ=255) cAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCgga < 2:3695261/150‑1 (MQ=255) cTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCggaagga < 1:4934455/150‑1 (MQ=255) tGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCACCCGTTATTTCAAACAACTCCGCCCCggaaggaa < 2:477980/150‑1 (MQ=255) gAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAAc < 1:3005430/150‑1 (MQ=255) aaCATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACa < 2:3546624/150‑1 (MQ=255) aaataaaaCAATTAATGACACAAGAAATACGATTAAATATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGATAAATCTATGTCTTTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACAt < 1:2889811/145‑1 (MQ=255) aTCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCa > 1:1465409/1‑150 (MQ=255) aaaCAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGaa > 2:2429856/1‑150 (MQ=255) aaaCAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGaa < 2:3161587/150‑1 (MQ=255) aaaCAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGaa > 2:2974931/1‑150 (MQ=255) aaaaTTAATGACACAAGAAATACGATTAAATATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCGGGAAGGAACATCAGAAAt < 1:3938016/148‑1 (MQ=255) aCAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAAt < 2:1337369/150‑1 (MQ=255) cAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATa < 2:4479674/150‑1 (MQ=255) aTTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGc > 1:2046354/1‑150 (MQ=255) tAATGACACAAGAAATACGATTAAATATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCa < 2:2213005/150‑1 (MQ=255) tAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCa < 2:2519630/150‑1 (MQ=255) aaTGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCaa > 2:4413005/1‑150 (MQ=255) aaTGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCaa > 2:3003593/1‑150 (MQ=255) aTGACACAAGAAATACTATTAAAGTTTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGATAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCaaa < 1:3634596/150‑1 (MQ=255) aTGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCaaa > 1:3253892/1‑150 (MQ=255) acacAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATc < 2:1476548/150‑1 (MQ=255) aGAAATACGATTAAATATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAg < 1:2049020/150‑1 (MQ=255) gAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGa > 2:2257978/1‑150 (MQ=255) gATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTc > 2:3186526/1‑150 (MQ=255) ttAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAg < 1:5102937/150‑1 (MQ=255) tnAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAg > 1:4534229/1‑150 (MQ=255) aGATTTTTTTGTGCATGCCGATTGTGATTTTTTAAAAGGATAAATCTATGTCTGTAACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGc < 1:539055/150‑1 (MQ=255) aGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGc > 1:1441017/1‑150 (MQ=255) gATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGct > 1:1827483/1‑150 (MQ=255) gATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGct < 2:3810770/150‑1 (MQ=255) tttttttGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGctga < 1:3623899/150‑1 (MQ=255) ttttttGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGctgac < 2:2644890/150‑1 (MQ=255) ttttttGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGctgac > 1:3392300/1‑150 (MQ=255) tttttGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGctgact < 1:1230294/150‑1 (MQ=255) tttttGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGctgact < 1:4028356/150‑1 (MQ=255) ttttGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGctgactg < 2:1761754/150‑1 (MQ=255) tttGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGctgactga > 2:4602696/1‑150 (MQ=255) tttGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGctgactga > 2:1677080/1‑150 (MQ=255) tgtgCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGaaa > 2:739855/1‑150 (MQ=255) gtgCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGaaaa < 1:3879418/150‑1 (MQ=255) tgCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGAAAAg < 2:2281860/150‑1 (MQ=255) tgCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGAAAAg > 1:221333/1‑150 (MQ=255) gCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGAAAAGc > 2:588518/1‑150 (MQ=255) cATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGAAAAGCt > 1:2317446/1‑150 (MQ=255) gCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGAAAAGCTTgg > 1:1530630/1‑150 (MQ=255) ccGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGAAAAGCTTggg > 2:4156202/1‑150 (MQ=255) gATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGAAAAGCTTGGGaa > 2:4700467/1‑150 (MQ=255) gATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGAAAAGCTTGGGaa > 2:4718987/1‑150 (MQ=255) gATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGAAAAGCTTGGGaa > 1:3611299/1‑150 (MQ=255) | CATGCGGCAGAAAATTATTGCCGAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGAAAAGCTTGGGAA > CP009273/1640490‑1640783 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |