| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 400,819 | A→C | 8.8% | V94V (GTT→GTG) | proC ← | pyrroline‑5‑carboxylate reductase, NAD(P)‑binding |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 400,819 | 0 | A | C | 8.8% | 548.1 / 11.6 | 220 | V94V (GTT→GTG) | proC | pyrroline‑5‑carboxylate reductase, NAD(P)‑binding |
| Reads supporting (aligned to +/- strand): ref base A (110/84); new base C (6/20); total (116/104) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.47e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 225 total aligned reads displayed.
TATCTTCTGGGGTTACCAGCGCGTTTGGCGTTACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGATTTGCGCCACTTCTTGCGCCGATTCTGCGGCGTTGATGCCGAACTGGTCATGCAG > CP009273/400671‑400968 | tATCTTCTGGGGTTACCAGCGCGTTTGGCGTTACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGaaa < 1:2527148/150‑1 (MQ=255) aTCTTCTGGGGTTACCAGCGCGTTTGGCGTTACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAAc > 1:2293253/1‑150 (MQ=255) tcttctGGGGTTACCAGCGCGTTTGGCGTTACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACg > 1:1495523/1‑150 (MQ=255) ttctGGGGTTACCAGCGCGTTTGGCGTTACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGAc > 1:5067018/1‑150 (MQ=255) ttctGGGGTTACCAGCGCGTTTGGCGTTACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGAc < 1:4283774/150‑1 (MQ=255) ctGGGGTTACCAGCGCGTTTGGCGTTACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCa > 2:4151061/1‑150 (MQ=255) ggggTTACCAGCGCGTTTGGCGTTACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCaga > 1:463006/1‑150 (MQ=255) gggTTACCAGCGGGTTTGGCGTTACGGTGGTCATCCCGGCATTAACCTGTGGGGGTGTGTTCGGCTTGGGGCGTTTATTTTTCGGGTAATGGCCCTGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCagag < 2:3133077/150‑1 (MQ=255) ggTTACCAGCGCGTTTGGCGTTACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCagaga > 2:4686560/1‑150 (MQ=255) ggTTACCAGCGCGTTTGGCGTTACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCagaga > 2:2100436/1‑150 (MQ=255) atttACCAGCTCGATTGGCGTTACGCAGGTCATCACGGCATAAACCACTGCGGCAGAGATAGGCATTGCGAGGATAAATATCCGGTCATGGCCCAGCGCTCGCGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGACACGACCagaga > 2:4686503/3‑150 (MQ=255) gTTACCAGCGCGTTTGGCGTTACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCACTAGACACGACCagagag > 2:5094118/1‑150 (MQ=255) aCCAGCGCGTTTGGCGTTACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCt > 1:3577986/1‑150 (MQ=255) aGCGCGTTTGGCGTTACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCCGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTa > 1:1833692/1‑150 (MQ=255) aGCGCGTTTGGCGTTACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTa > 1:2632346/1‑150 (MQ=255) ggcttttGGCGTTAGGGAGGTCATCCCGGAATTAACCTGTGGGGGTGTGTTCGGTTTGGCGCGGATATTTTTCCGGTCATGGCCCAGCGCGCGGGAAAGCTGGTCGAGCGTGACACCTGCAGAAATAGAAACGACCAGAGAGTCTTTAtt < 1:4584877/146‑1 (MQ=255) cgcgTTGGGCGTTACGGAGGTCATCCCGGAATTAACCAGTGCGGGAGTGTTCGGCAGGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTAtt < 2:4936058/150‑1 (MQ=255) gggTTTGGCGTTACGGTGGTCATCCCGGAATTAACCTGGGGGGGCGTGTTGGGCTGGGCGGGGATATTTTTCCGGTCTTGGCCCAGCGCGCGGGCAAGCTGGTCGTGCGTTACACCTGCAGAAATAGACACGACCAGAGAGTCTTTATTc < 1:1652406/148‑1 (MQ=255) cgTTTGGCGTTACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCa > 2:334770/1‑150 (MQ=255) gTTTGGCGTTACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAg > 2:3624245/1‑150 (MQ=255) gTTTGGCGTTACGGAGGTCATCCCGGAATTAACCTGTGCGGGTGTGTTCGGCATGGCGCGTATAATTTTCCGGTCTTGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATATAAACGACCAGAGAGTCTTTATTCAg < 2:4806091/150‑1 (MQ=255) tttGGCGTTACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAgg > 1:4012784/1‑150 (MQ=255) tttGGCGTTACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAgg > 1:4012590/1‑150 (MQ=255) tttGGCGTTACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAgg > 2:4008427/1‑150 (MQ=255) ttGGCGTTACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGAAGAAATAGAAACGACCAGAGAGTCTTTATTCAGGc < 2:1536333/150‑1 (MQ=255) ggCGTTAGGGAGGTCATCCCGGAATTAACCAGTGGGGTTGTGTTGGGCTTGGCGCGTATAATTTTCCGGTCATGGCCCAGCGCGGGGGCACGCTGGTCGCGGGTGCCACATGCAGAAATAGACACGACCAGAGAGTCTTTATTCAGGCTg < 1:2248033/150‑1 (MQ=255) ggCGTTACGGTGTTCATCCCGGAATTAACCCGTGCGGGAGTGTTCGGCATGGCGCGTATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTg < 1:1203853/150‑1 (MQ=255) cGTTACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGa < 2:2021255/150‑1 (MQ=255) tttccGGAGTTCATCCCGGCATTAAACTGTGCGGGTGTTTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCTTGCTGTTCGAGCGTTACACCTGAACAAAAATAAACGACCAGAGAGTCTTTATTCAGGCTGGAg < 2:90415/146‑1 (MQ=255) gTTACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAg > 2:1784615/1‑150 (MQ=255) tACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGTGTCTTTATTCAGGCTGGAGGt < 2:100408/150‑1 (MQ=255) tACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGt > 1:1391523/1‑150 (MQ=255) cGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGa > 2:2632866/1‑150 (MQ=255) cGGAGGACATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATATTTTTCCGGTAATGGCCCCGCGCGCGGGAAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGa < 1:1279814/150‑1 (MQ=255) gAGGTCATCCCGGCATTAACCTGTGCGGGTGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGCGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGAtt < 2:849388/150‑1 (MQ=255) gAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGAtt < 2:2973656/150‑1 (MQ=255) aGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGAttt < 2:3711370/150‑1 (MQ=255) ggTCATCCCGGCATTAACCTTGGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCTAGCGTGACACCTGCAGAAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTc < 2:3250633/150‑1 (MQ=255) ggTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTc > 1:521754/1‑150 (MQ=255) gTCATCCCGGCATTACCCTGTGGGGGTGTGTTCGGCTTGGCGCTGATATTTTGCCGGTCCTGGCCCAGCGCGCGGGCATGCTGGTCGTGCGTGACACCTGCAGCAATACAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCg < 1:1899600/150‑1 (MQ=255) gTCATCCCGGCATTAACCAGTGCGGGTGTGTTCGGCTTGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCGGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCg < 2:356795/150‑1 (MQ=255) cATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCt > 2:3235867/1‑150 (MQ=255) aTCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTa > 1:1627539/1‑150 (MQ=255) ccGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGc > 2:1950631/1‑150 (MQ=255) ccGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGc > 2:2270173/1‑150 (MQ=255) ccGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGc > 2:3671108/1‑150 (MQ=255) ggCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCAc > 1:4003163/1‑150 (MQ=255) gCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACt < 1:3442560/150‑1 (MQ=255) aTTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACttt > 2:3945918/1‑150 (MQ=255) aTTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGACCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGACACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACttt > 2:4418275/1‑150 (MQ=255) ttACCCCGTGCGGGTGTGTTCGGCAGGGCGCGGATTTTTTTCCGGTCTTGGCCCCGCGCGCGGGCAAGGTGGTCGCGGTTGACACCTGCACCAATACACACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTa < 1:441605/150‑1 (MQ=255) tAACCAGTGCGGGAGTGTTCGGCAGGGCGCGGATAATTTTCCGGTCATGGCCCTGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTaa < 2:1420165/150‑1 (MQ=255) ccAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCa > 1:3364782/1‑150 (MQ=255) aGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCACTAGACACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCatg > 2:4245714/1‑150 (MQ=255) gggAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTCAGCACTTTAATCATGATGcc > 1:3214434/1‑150 (MQ=255) gggAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGcc > 1:4886686/1‑150 (MQ=255) gggAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGcc > 1:478712/1‑150 (MQ=255) gggAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGcc > 2:1347092/1‑150 (MQ=255) gtTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGttt > 1:3101900/1‑150 (MQ=255) tCGGCATGGCGCGGATAATTTTCCGGTCTTGGCCCCGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGACACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTaa < 2:1319168/150‑1 (MQ=255) cGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAAc > 1:2931335/1‑150 (MQ=255) cGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAAc < 2:2831513/150‑1 (MQ=255) cATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGgc > 2:1182702/1‑150 (MQ=255) cATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGgc > 2:4616724/1‑150 (MQ=255) ggCGCGGATAATTGTCCGGTCTTGGCCCCGCGCGCGGGCACGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGgcagc < 1:2789166/150‑1 (MQ=255) cgcgGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCTTGACACCTGCAGAAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCaa < 1:4084142/150‑1 (MQ=255) gcgGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCaaa > 2:2579140/1‑150 (MQ=255) ggATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCaaaaa > 1:4187579/1‑150 (MQ=255) aaTTGTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAatgat < 2:171343/150‑1 (MQ=255) tttCCGGTCATGGCCCAGCGCGCGGGCAAGCTGTTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTc < 2:1302758/150‑1 (MQ=255) tttCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGCGCGTGACACCTGCAGAAATACACACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTc < 1:150168/150‑1 (MQ=255) tCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCgg > 1:972402/1‑150 (MQ=255) cGGGCAGGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGACACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCg < 2:4947118/150‑1 (MQ=255) gTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGAt > 1:3484996/1‑150 (MQ=255) gTCAGGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCGGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGAt < 2:2939907/150‑1 (MQ=255) tcttGGCCCCGCGCGCGGGCAAGCGGGGCGAGCGTGACACCTGCAGAAATACAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGAtt < 1:2652973/147‑1 (MQ=255) cttGGCCCAGCGCGGGGGCATGCGGGTCGTGGGTGACACCTGCACCAAAACAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGAttt < 1:1851685/148‑1 (MQ=255) tGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGATTTgc > 1:2697226/1‑150 (MQ=255) aGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGATTTGCGCCAct > 1:4184645/1‑150 (MQ=255) aGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGATTTGCGCCAct > 1:3761573/1‑150 (MQ=255) gcgcgcGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGATTTGCGCCActt > 1:2070875/1‑150 (MQ=255) cgcgcgGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGATTTGCGCCActtc < 2:3293336/150‑1 (MQ=255) cgcgcgGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGATTTGCGCCActtc > 1:3561032/1‑150 (MQ=255) cAAGCTGGTCGAGCGTTACACCTGCAGCAATACACACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGATTTGCGCCACTTCTTGCGCCg < 1:761775/150‑1 (MQ=255) cAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGATTTGCGCCACTTCTTGCGCCg < 2:3364782/150‑1 (MQ=255) cAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGATTTGCGCCACTTCTTGCGCCg < 2:2924598/150‑1 (MQ=255) cTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGATTTGCGCCACTTCTTGCGCCGATTc < 2:2596786/150‑1 (MQ=255) cGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGATTTGCGCCACTTCTTGCGCCGATTCTGCGGCGtt < 2:2898212/150‑1 (MQ=255) gTGACACCTGCAGCAATAGACACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGATTTGCGCCACTTCTTGCGCCGATTCTGCGGCGTTg < 1:2376735/150‑1 (MQ=255) tGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGATTTGCGCCACTTCTTGCGCCGATTCTGCGGCGTTGa > 2:924238/1‑150 (MQ=255) ccTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGATTTGCGCCACTTCTTGCGCCGATTCTGCGGCGTTGATGCCg < 1:3358841/150‑1 (MQ=255) tGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGATTTGCGCCACTTCTTGCGCCGATTCTGCGGCGTTGATGCCGaa < 2:682631/150‑1 (MQ=255) gcagcaATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGATTTGCGCCACTTCTTGCGCCGATTCTGCGGCGTTGATGCCGAAc > 2:3250769/1‑150 (MQ=255) cagcaATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGATTTGCGCCACTTCTTGCGCCGATTCTGCGGCGTTGATGCCGAACt < 2:4315699/150‑1 (MQ=255) caATAGACACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGATTTGCGCCACTTCTTGCGCCGATTCTGCGGCGTTGATGCCGAACTGGt < 1:4229762/150‑1 (MQ=255) aTAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGATTTGCGCCACTTCTTGCGCCGATTCTGCGGCGTTGATGCCGAACTGGTCa < 1:2435430/150‑1 (MQ=255) tAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGATTTGCGCCACTTCTTGCGCCGATTCTGCGGCGTTGATGCCGAACTGGTCAt < 1:1013696/150‑1 (MQ=255) tAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGATTTGCGCCACTTCTTGCGCCGATTCTGCGGCGTTGATGCCGAACTGGTCAt > 1:3660010/1‑150 (MQ=255) tAGAAACGACCAGAGAGTCTGTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGATTTGCGCCACTTCTTGCGCCGATTCTGCGGCGTTGATGCCGAACTGGTCAt < 2:1669207/150‑1 (MQ=255) aaCGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATCATGTCGGCGATTTGCGCCACTTCTTGCGCCGATTCTGCGGCGTTGATGCCGAACTGGTCATGCAg < 1:4899722/150‑1 (MQ=255) | TATCTTCTGGGGTTACCAGCGCGTTTGGCGTTACGGAGGTCATCCCGGCATTAACCAGTGCGGGAGTGTTCGGCATGGCGCGGATAATTTTCCGGTCATGGCCCAGCGCGCGGGCAAGCTGGTCGAGCGTGACACCTGCAGCAATAGAAACGACCAGAGAGTCTTTATTCAGGCTGGAGGTGATTTCGCTAAGCACTTTAATCATGATGCCAGGTTTAACGGCAGCAAAAATGATGTCGGCGATTTGCGCCACTTCTTGCGCCGATTCTGCGGCGTTGATGCCGAACTGGTCATGCAG > CP009273/400671‑400968 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |