| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 941,177 | G→A | 10.8% | intergenic (‑164/‑150) | ycaC ← / → ycaD | putative isochorismatase family hydrolase/putative MFS‑type transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 941,177 | 0 | G | A | 10.8% | 611.2 / 48.3 | 195 | intergenic (‑164/‑150) | ycaC/ycaD | putative isochorismatase family hydrolase/putative MFS‑type transporter |
| Reads supporting (aligned to +/- strand): ref base G (94/80); new base A (14/7); total (108/87) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.54e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01 | |||||||||||
Only 100 of 205 total aligned reads displayed.
GAGAGTCAGTGGTACGTCTGAAATCGATCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAACTTCCTCACGGTTTTAATTC > CP009273/941028‑941326 | agagTCAGTGGTACGTCTGAAATCGATCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATgaga > 2:2228682/1‑150 (MQ=255) tCAGTGGTACGTCTGAAATCGATCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTaa < 2:4596734/150‑1 (MQ=255) tGGTACGTCTGAAATCGATCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAatcat < 1:4399448/150‑1 (MQ=255) tGGTACGTCTGAAATCGATCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAatcat < 1:2018112/150‑1 (MQ=255) aCGTCTGAAATCGATCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATctct < 2:4254771/150‑1 (MQ=255) tCTGAAATCGATCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCa < 1:2270317/150‑1 (MQ=255) tGAAATCGATCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGc < 1:1021959/150‑1 (MQ=255) cGATCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGc < 2:1876955/150‑1 (MQ=255) gATCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCg > 1:3246585/1‑150 (MQ=255) tCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAAACTAATCATCTCTTCAGCATTAGCGtt < 1:1779913/150‑1 (MQ=255) cAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATGAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTa > 2:3002359/1‑150 (MQ=255) cAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTa > 2:631444/1‑150 (MQ=255) gACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTatg > 1:1773706/1‑150 (MQ=255) aCGCGATGCATTGCTCTGAAAGCATAGACGGGAAATCTGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTatga > 2:433861/1‑150 (MQ=255) aCGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTatga < 2:4378517/150‑1 (MQ=255) gcgATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTatgaat < 2:1005812/150‑1 (MQ=255) gcgATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTatgaat < 2:2073032/150‑1 (MQ=255) gcgATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTatgaat < 1:1193237/150‑1 (MQ=255) gATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTatgaatga > 2:1901166/1‑150 (MQ=255) gATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTatgaatga > 2:2240413/1‑150 (MQ=255) tGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGTAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGt < 1:1720825/150‑1 (MQ=255) tGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGt < 1:4518216/150‑1 (MQ=255) tGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGt < 2:1841289/150‑1 (MQ=255) tGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGt < 1:2133946/150‑1 (MQ=255) tGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAAACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGt < 1:1516791/150‑1 (MQ=255) gCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTa > 1:3206821/1‑150 (MQ=255) tGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAatat < 2:3294776/150‑1 (MQ=255) tGCTCTGAAAGCATAGACGGGAAATATGAGTGTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAatat < 2:2841929/150‑1 (MQ=255) ctctGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATaa > 1:1811545/1‑150 (MQ=255) ctctGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAAACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATaa > 1:3107989/1‑150 (MQ=255) tctGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATaaa > 2:2138807/1‑150 (MQ=255) ctGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAAACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAAt < 1:1922187/150‑1 (MQ=255) gAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCg > 1:2656412/1‑150 (MQ=255) gAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCg > 1:3947372/1‑150 (MQ=255) aGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAAACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGata > 1:3035535/1‑150 (MQ=255) aGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAAACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGata > 1:3035500/1‑150 (MQ=255) aTAGACGGGAAATATGAGTTTGCTGTGACCATTAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGataata < 2:2404213/150‑1 (MQ=255) aTAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGataata < 1:1380835/150‑1 (MQ=255) aCGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATAccgc > 1:1980996/1‑150 (MQ=255) gAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCt < 1:3311360/150‑1 (MQ=255) aaaTATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTg > 2:125279/1‑150 (MQ=255) aaaTATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTg < 1:3927409/150‑1 (MQ=255) aaTATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTgg > 2:1598839/1‑150 (MQ=255) atatGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAAACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTggg > 1:4690158/1‑150 (MQ=255) tatGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGa > 2:3138288/1‑150 (MQ=255) tatGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGa > 2:1163571/1‑150 (MQ=255) tGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACAGCCGCTGGGata > 2:3369639/1‑150 (MQ=255) tttGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATcgc > 2:2510092/1‑150 (MQ=255) tGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGt < 2:2180351/150‑1 (MQ=255) cTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTAt < 1:3837852/150‑1 (MQ=255) cTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTAt < 2:1190984/150‑1 (MQ=255) tgtgACCATGAAATTTTTCGACTGAACGAAGCGTATTAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTAtt < 1:1467282/150‑1 (MQ=255) gACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTc > 1:4599298/1‑150 (MQ=255) aCCATGAAATTTTTCGACTGAACGAAGCGTAGGAAATTTGAGTTAGTTCAATAAAAACAATCAGATGAGACAAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATACATCGATAATACCGCCGCTGGGATATCGCGAATTTTCa > 1:1548452/1‑150 (MQ=255) gAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCAt < 2:4730622/150‑1 (MQ=255) aaaTTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCAtt < 1:2751982/150‑1 (MQ=255) aTTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAAACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGa > 2:4231349/1‑150 (MQ=255) ttCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAAt > 2:2031517/1‑150 (MQ=255) gACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTCTGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGtt > 2:3350850/1‑150 (MQ=255) cTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGtttt < 1:2840595/150‑1 (MQ=255) cTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGtttt < 1:3761118/150‑1 (MQ=255) tGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGttttt > 1:1450087/1‑150 (MQ=255) tGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGttttt > 1:4383781/1‑150 (MQ=255) aGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTg < 1:2240413/150‑1 (MQ=255) cGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTAACCCATTTACAATGTTTTTGGCGGTGGc > 2:3694740/1‑150 (MQ=255) gTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCa < 2:2656409/150‑1 (MQ=255) gTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCa > 1:523701/1‑150 (MQ=255) gTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAACGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCa < 2:3949893/150‑1 (MQ=255) tATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCat < 2:2334969/150‑1 (MQ=255) gAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCatgat < 1:3408928/150‑1 (MQ=255) gAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCatgat < 2:2803989/150‑1 (MQ=255) aaaTTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCatgatg > 2:228518/1‑150 (MQ=255) aaTTTGTGTTAGTTCAATAAAAACAATCAGATGAAACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATgc > 1:1884000/1‑150 (MQ=255) aTTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATgcg > 2:2494916/1‑150 (MQ=255) aTTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATgcg > 1:4111378/1‑150 (MQ=255) tttgtTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCAt < 1:4097397/148‑1 (MQ=255) ttAGTTCAATAAAAACAATCAGATGAAACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGaaa > 2:3647500/1‑150 (MQ=255) tAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAAt < 1:2444082/150‑1 (MQ=255) tAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAAt < 1:631444/150‑1 (MQ=255) aGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAAtt < 2:435438/150‑1 (MQ=255) aGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAAtt < 2:2037823/150‑1 (MQ=255) aGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAAtt > 2:1407426/1‑150 (MQ=255) aaaaaaaaCAATCAGATTAGACTAATCATCTCTTCATCATTAGCGTTATGAATGAGTAAAAAAAATAGATAATACCGCCGCTGGGATAACGCGTATTTTCAACCATTGAAAATGTTTTTGGCGGTGGCATGATGCGCATGAAAAATGAAc > 1:3144988/4‑150 (MQ=255) aaTAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAAc > 1:3145016/1‑150 (MQ=255) aTAAAAACAATCAGATGAAACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAACTTTGAACt > 1:4732615/1‑150 (MQ=255) tAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAACtt < 1:767163/150‑1 (MQ=255) tAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAACtt < 1:3138288/150‑1 (MQ=255) aaaaaCAATCAGATGAAACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAACTTc > 2:4104412/1‑150 (MQ=255) aaaaCAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAACTTcc > 2:4579932/1‑150 (MQ=255) aaCAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAACTTCCTc > 2:3942077/1‑150 (MQ=255) aTCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAACTTCCTCACgg > 2:2671546/1‑150 (MQ=255) tcagcagagaCTAATCACCTCTTCCGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCAAGATGCGCATGAAATTTGAACTTCCTCACGGt < 1:2971239/144‑1 (MQ=255) tCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAACTTCCTCACGGt > 2:4667710/1‑150 (MQ=255) tCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAACTTCCTCACGGt > 2:656400/1‑150 (MQ=255) cAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAACTTCCTCACGGtt > 1:1333207/1‑150 (MQ=255) cAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGGAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAACTTCCTCACGGtt > 2:137711/1‑150 (MQ=255) aTGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAACTTCCTCACGGTTTTa < 1:933044/150‑1 (MQ=255) aTGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAACTTCCTCACGGTTTTa < 1:932947/150‑1 (MQ=255) aTGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATAACGCGTAATTTAACACATTGACAATGTTTTTTGAGGTGGCATGATGCGAATGAAATTTGAACTACCTCACggatata > 1:4644007/1‑145 (MQ=255) gagaCTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAACTTCCTCACGGTTTTAAt < 1:1635312/150‑1 (MQ=255) | GAGAGTCAGTGGTACGTCTGAAATCGATCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAACTTCCTCACGGTTTTAATTC > CP009273/941028‑941326 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |