| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,305,116 | C→A | 93.6% | intergenic (‑103/+9) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,305,116 | 0 | C | A | 93.6% | 719.3 / 33.6 | 221 | intergenic (‑103/+9) | apbE/ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
| Reads supporting (aligned to +/- strand): ref base C (8/7); new base A (110/96); total (118/103) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 224 total aligned reads displayed.
AGAGCGCGGCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATCAATCGAGATTAGAACTGGTAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGTCAACGTAGGTGGACATGTTTTTGTTGAAGTAGTAGGTAGCACC > CP009273/2304968‑2305265 | agagCGCGGCAGCCAGCAGTGCCACGCGGTTAAAGCTTTTTTCCATACGTGATTATCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATCa < 2:3654061/150‑1 (MQ=255) gcgcgcgcCAGCCAGCAGTGCCACGCGGTTAAAGCTAATTTCCATACGTCATTATCCTCATGCGACCGGTCGAAAGAGTACACCAAAAAAATGAGTTGGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATaaa < 2:2525560/148‑1 (MQ=255) agCGCGGCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAAt > 1:1526519/1‑150 (MQ=255) gcgcGGCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACTTTATTATCCTCATGCGAACGGTCGCAATAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TCAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATc < 1:3106382/150‑1 (MQ=255) gcgcGGCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTTTTTATCCTCTTGCGAACGGTCGCAAGTGTACACAAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATc < 1:4252386/150‑1 (MQ=255) gcgcGGCAGCAAGCAGTGCCACGCGGGTAAAGATTATTTCCATACGTTATTATCCTCATGCGAACGTTCGCAAGAGTACACCAAAAAACTGAGTTTTTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATc < 1:1134488/150‑1 (MQ=255) cgcgGCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCg < 2:558238/150‑1 (MQ=255) cgcgGCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCg > 2:2976209/1‑150 (MQ=255) ggCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCgaga > 2:4147825/1‑150 (MQ=255) cagccagcAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGAtt < 2:2264045/150‑1 (MQ=255) agccagcTGTGCCACGCGTTTAACGATTATTACCATACTTTATTACCCTCATGCTAACGGTCGCAACAGTACACAAAAAAACTGATTTTTTACGCTCAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTa < 1:3750306/150‑1 (MQ=255) gccagcTGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCTTGCGACCGGTCGCACGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAg < 1:1505461/150‑1 (MQ=255) gccagcAGTGCCCCGGGGGTAAAGCTTTTTACCATAGGTGATTATCATCTTGCGCACGGTCGCAAGAGTACACCAAAAAACTGAGTTTTTACGCTGAAAACAA‑TTAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAg < 1:625939/150‑1 (MQ=255) agcagTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGCGATTAGAAc > 2:2105471/1‑150 (MQ=255) agcagTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAAc > 2:2376632/1‑150 (MQ=255) agTGCCACGCGGTTAAAGCTTTTTTCAATACGTTATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAACACTGATTTTTTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTgg < 2:2408220/150‑1 (MQ=255) tGCCACGGGGTTAAATATTATTTCAATTCTTTATAAACCTCATCCGAACGTTCGAAAGATAACAAAAAAAAACTGTGTTTTTACGATCAAAAAAA‑TTAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTggca < 1:1992136/150‑3 (MQ=255) cACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAAc > 2:367315/1‑150 (MQ=255) cACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAAc > 2:4201148/1‑150 (MQ=255) cgGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGa > 1:4044263/1‑150 (MQ=255) ggTAAAGCTTATTTCCATACGTGATTAACCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGAcc > 1:4156549/1‑150 (MQ=255) tAAAGCTTATTTCCATACGTGATTATCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCa > 1:2874236/1‑150 (MQ=255) cTTATTTCCATACGTGATTATCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATCAATCGAGATTAGAACTGGTAAACCAGACCCAGAGCt > 1:2146897/1‑150 (MQ=255) cTTATTTCCATACGTGATTATCCACATGCCCACGGTCGCAAGAGTACACCAAAAAACTGATTTTGTACGCTCAAAAAAA‑TCAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATCAAACGAGATTAGAACTGGTAAACCAGACCCAGAGCt < 2:3190319/150‑1 (MQ=255) tATTTCCATAAGTGATTATCCTCATTCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGATGAAAACAA‑TGAAAAAAGGGCCCGCAGGACCTTTTTTCGATATAAATAGAGATTAGAACTCTCAAACCAGACCCAGAGCTaa > 1:3349063/1‑149 (MQ=255) aTTTCCATACGTGATTATCCTCATGCCAACGGTCTAAATATAACACAAAAAAACTTTGTTTTTACGCTCAAAAAAT‑TCAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACg < 1:1648641/150‑1 (MQ=255) tttCCATACGTGATTATCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGa > 1:4451457/1‑150 (MQ=255) tCCATACGTGATTATCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATg > 1:2387427/1‑150 (MQ=255) ccATACGTGATTATCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGt > 1:1161434/1‑150 (MQ=255) ccATACGTGATTATCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGt > 1:4175580/1‑150 (MQ=255) aTACGTGATTATCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTa < 2:730337/150‑1 (MQ=255) aCGTTATTATCCTCATGCGACCGGTCGCACGAGTACACCAAAAACCTGCGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATc < 1:606784/150‑1 (MQ=255) aTTATCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTCTCAgtgt > 2:1684951/1‑150 (MQ=255) aTCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGa > 1:881536/1‑150 (MQ=255) tCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTCCGATGTTATCAGTGTTGAt > 1:1266038/1‑150 (MQ=255) tCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGAt > 1:3660116/1‑150 (MQ=255) cTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGc > 2:616090/1‑150 (MQ=255) tCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGATTTTGTCCGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGcc < 2:1190245/150‑1 (MQ=255) tCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGcc < 2:4211789/150‑1 (MQ=255) cATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCa > 1:3458566/1‑150 (MQ=255) aTGCGAACGGTCGCAAGAGTACCCCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAg < 2:1512266/150‑1 (MQ=255) aTGCGAACGGTCGAAAGAGTACACAAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAg < 1:4657193/150‑1 (MQ=255) gAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTc > 1:1126936/1‑150 (MQ=255) aaCGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCa < 2:1954181/150‑1 (MQ=255) aaCGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCa > 1:3250077/1‑150 (MQ=255) cGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATCAATCGAGATTAGAACTGGTAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACg > 1:1066893/1‑150 (MQ=255) tCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGt < 2:3347256/150‑1 (MQ=255) cGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTg > 2:3995835/1‑150 (MQ=255) gCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATCAATCGAGATTAGAACTGGTAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGa > 1:529311/1‑150 (MQ=255) gCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATCAATCGAGATTAGAACTGGTAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGa > 1:232934/1‑150 (MQ=255) cAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGaa > 2:731354/1‑150 (MQ=255) cAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGaa < 2:4578137/150‑1 (MQ=255) aaaGAGTACACAAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGaa < 1:2673087/149‑1 (MQ=255) gagTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTg > 1:3059170/1‑150 (MQ=255) taccaaaaaaaaaGTGTGTTTTTACGC‑GTAAACAATTGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGt < 1:2794704/143‑1 (MQ=255) tACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGtt < 2:1551598/150‑1 (MQ=255) tACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGtt < 2:4386230/150‑1 (MQ=255) acacCAAACAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTg < 2:1063517/150‑1 (MQ=255) acacCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTg > 1:1564027/1‑150 (MQ=255) acacCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTg < 2:76181/150‑1 (MQ=255) acacCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTg < 2:2842533/150‑1 (MQ=255) acacCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTg < 2:497978/150‑1 (MQ=255) ccAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTgtcg < 2:1125532/150‑1 (MQ=255) cAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTgtcgt > 2:2689962/1‑150 (MQ=255) aaaaaaCTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTgtcgtc > 1:516298/1‑150 (MQ=255) cTGAGTTTGTACGCTGAAAACAA‑TGGAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCcagcag > 2:552382/1‑150 (MQ=255) cTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCcagcag < 2:1775127/150‑1 (MQ=255) cTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCcagcag > 1:1695950/1‑150 (MQ=255) gTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGAGGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGtgg > 2:3857368/1‑148 (MQ=255) gTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGAGGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGAttt > 2:89333/1‑150 (MQ=255) tACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGAtttt < 1:3168898/150‑1 (MQ=255) cGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGt > 2:3128496/1‑150 (MQ=255) cTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGTAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAg < 1:3107042/150‑1 (MQ=255) cTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAg > 2:4667528/1‑150 (MQ=255) cTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAg > 2:3746062/1‑150 (MQ=255) ttaaaaCAA‑TCAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGt < 1:143427/148‑1 (MQ=255) tGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGGTGATTTTGTAGt > 1:4526149/1‑150 (MQ=255) gAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGTc < 2:211371/150‑1 (MQ=255) gAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCATTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGTc < 2:224695/150‑1 (MQ=255) aaCAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATGTTGTAGTCAAc > 2:1360197/1‑150 (MQ=255) cAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGTCAACGt > 1:2269979/1‑150 (MQ=255) aaaaaaGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGTCAACGTAGGTg < 1:336832/150‑1 (MQ=255) aaaaaGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATGAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGTCAACGTAGGTgg < 1:2381018/150‑1 (MQ=255) aaaaGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGTCAACGTAGGTGGa > 2:4314724/1‑150 (MQ=255) aaGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGTCAACGTAGGTGGACa > 1:2641537/1‑150 (MQ=255) aGGGCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGTCAACGTAGGTGGACAt < 1:4250950/150‑1 (MQ=255) gggCCCGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGTCAACGTAGGTGGACATg < 2:142816/150‑1 (MQ=255) ccGCAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGTAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGTCAACGTAGGTGGACATGtttt < 2:1012307/150‑1 (MQ=255) cAGGCCCTTTGTTCGATATCAATCGAGATTAGAACTGGTAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGTCAACGTAGGTGGACATGTTTttgt > 2:1177690/1‑150 (MQ=255) cAGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGTCAACGTAGGTGGACATGTTTttgt > 2:4230438/1‑150 (MQ=255) aGGCCCTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGTCAACGTAGGTGGACATGTTTttgtt > 1:2842975/1‑150 (MQ=255) cccTTTGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGTCAACGTAGGTGGACATGTTTTTGTTGaa < 1:4203330/150‑1 (MQ=255) cTTTGTTCGATATCAATCGAGATTAGAACTGGTAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGTCAACGTAGGTGGACATGTTTTTGTTGAagt < 2:2146897/150‑1 (MQ=255) tttGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGTCAACGTAGGTGGACATGTTTTTGTTGAagta < 2:3099210/150‑1 (MQ=255) ttGTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGTCAACGTAGGTGGACATGTTTTTGTTGAagtag > 2:277709/1‑150 (MQ=255) gTTCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGTCAACGTAGGTGGACATGTTTTTGTTGAAgtagta > 2:174717/1‑150 (MQ=255) ttCGATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGTCAACGTAGGTGGACATGTTTTTGTTGAAGtagtag > 2:3592027/1‑150 (MQ=255) gATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGTCAACGTAGGTGGACATGTTTTTGTTGAAGTAgtaggtc > 2:688002/1‑149 (MQ=255) gATATAAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGTCAACGTAGGTGGACATGTTTTTGTTGAAGTAgtaggta > 2:66106/1‑150 (MQ=255) tataAATCGAGATTAGAACTGGCAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGTCAACGTAGGTGGACATGTTTTTGTTGAAGTAGTAGGTAGc > 1:3628658/1‑150 (MQ=255) | AGAGCGCGGCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAA‑TGAAAAAAGGGCCCGCAGGCCCTTTGTTCGATATCAATCGAGATTAGAACTGGTAAACCAGACCCAGAGCTACGATGTTATCAGTGTTGATGCCAGCGTCACGAGTGAACTGGTTGTCGTCCAGCAGGTTGATTTTGTAGTCAACGTAGGTGGACATGTTTTTGTTGAAGTAGTAGGTAGCACC > CP009273/2304968‑2305265 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |