| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,439,422 | G→T | 11.0% | I26I (ATC→ATA) | rplF ← | 50S ribosomal subunit protein L6 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,439,422 | 0 | G | T | 11.0% | 620.4 / 6.5 | 256 | I26I (ATC→ATA) | rplF | 50S ribosomal subunit protein L6 |
| Reads supporting (aligned to +/- strand): ref base G (100/113); new base T (24/18); total (125/131) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.42e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 263 total aligned reads displayed.
ACCATTGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGT > CP009273/3439273‑3439571 | aCCATTGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTg < 1:1239219/150‑1 (MQ=255) ccATTGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGa > 1:2672351/1‑150 (MQ=255) cATTGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGAt < 2:1705924/150‑1 (MQ=255) aTTGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTATACCGTTTAta > 1:3588475/1‑149 (MQ=255) gAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGta < 2:3988012/150‑1 (MQ=255) gAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGta > 2:1102441/1‑150 (MQ=255) ttCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGtaata < 1:810607/150‑1 (MQ=255) ttCAGCAGGGCACGCGCGGGACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGtaata < 1:598990/150‑1 (MQ=255) tCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGTTCGtaataa > 1:2017557/1‑150 (MQ=255) cagcagGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAAc < 2:3922579/150‑1 (MQ=255) agcagGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAAcc < 2:3254102/150‑1 (MQ=255) agGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTACCATTGATCGTAAAAACCAGa > 1:4163039/1‑150 (MQ=255) gggCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGAc > 1:1477624/1‑150 (MQ=255) gggCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTACCTTTGATCGTAATAACCAGAc > 2:600927/1‑150 (MQ=255) cACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCGTTGATCGTAATAACCTGACCgg > 2:3664000/1‑149 (MQ=255) aCGCGCGGGACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGtt < 2:81008/150‑1 (MQ=255) cgcgcgGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTg > 2:2731991/1‑150 (MQ=255) gcgcgGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGa < 1:771870/150‑1 (MQ=255) cgcgGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGAt < 1:2369506/150‑1 (MQ=255) cgGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGtttt > 2:863456/1‑150 (MQ=255) cgGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGAttt < 1:275748/150‑1 (MQ=255) cgGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGAttt < 1:2727590/150‑1 (MQ=255) tACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAAACAGACCGTTTAtttttt > 1:4493519/1‑149 (MQ=255) aCCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTAc < 1:1567479/150‑1 (MQ=255) aCCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTAc > 2:1531296/1‑150 (MQ=255) cAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTCCGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTAAGt > 2:2553456/1‑150 (MQ=255) cAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGt > 2:1744132/1‑150 (MQ=255) aGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGTTCGTTATAAACAGACCGTTTAttttttagtc > 1:1299719/1‑145 (MQ=255) aGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTc < 1:907476/150‑1 (MQ=255) tgtgCCCAACCGTCTGCGTAACCCTCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACg < 2:4062172/150‑1 (MQ=255) tgCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGcc > 1:4318707/1‑150 (MQ=255) tgCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTACCGTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGcc > 2:4421454/1‑150 (MQ=255) gCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCg > 2:1902315/1‑150 (MQ=255) gCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCg > 2:1396368/1‑150 (MQ=255) cAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGGTGATTTTTAAGTCAAAGCCGGCa > 2:4368199/1‑150 (MQ=255) tCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGaaca < 2:3597055/150‑1 (MQ=255) tCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGaaca < 2:1259652/150‑1 (MQ=255) tGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGaacaac < 1:509211/150‑1 (MQ=255) tGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTACCTTTGATAGTAATAAACAGACCGTTTAATTATAAGTAAAAGCCGGCAGGaacaac > 1:1948409/1‑150 (MQ=255) gCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACg < 1:469506/150‑1 (MQ=255) tAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCAGACCGGTGTTTTTTAAGTCAAAGCCGGCAGGAACAACGAcc > 1:2952869/1‑150 (MQ=255) aTCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGTCCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGc > 1:1144947/1‑150 (MQ=255) tcccgcgGACCGATGGTCAGGGTTTTATCTGCATGTTTAACTTCAACTGCATCGTTGAGTGTACGAGTCCGCTCGCCGTTTTTACCTTTGATCGTAATAACCGGCCCGTTGATTTTTCCGTCAACGCCGGCAGGAACAACGACCGGTGCt < 2:4239639/147‑1 (MQ=255) tCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAAACAGACCGTTGATTTTTTCGTCAACGCCGGCAGGAACAACCACCGGTGCt > 1:110731/1‑150 (MQ=255) cACGCGGCCCGAAGGTCAGGTTTTTATCTGCATGTTTAACTTCAACAGAATCGTTGAGAGTACGAGTCAGCTCGCCTTTTTTACCTTTGATCGTAATAACCTGACCTTTTATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCtt < 2:1696737/150‑1 (MQ=255) cACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACATTTAAAGTAAAAACCTGAACCTTGATTTTTAAGTCAAAGCCCGCAAGAACAAAGACCAGTGcat > 1:3509984/1‑148 (MQ=255) gACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCaa > 2:2239552/1‑150 (MQ=255) gACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTAACGTTGATCGGAAAAAAAAGACCCTTGTTTTTTTAGTAAACGCCCGCAGGCACAAACACCGCGGCTTTTGCaa > 1:3580699/1‑150 (MQ=255) cGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCCGCAGGAACAACGACCGGTGCGTTAGCAacac > 2:4438941/1‑150 (MQ=255) cGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATAGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAacac > 2:2059462/1‑150 (MQ=255) gAAGGTCAGGGTATTATCTGCATTTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGGTCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACg < 2:2622331/150‑1 (MQ=255) aaGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCATTTATAGTTATAACCTGACCGTTTATTTTTAAGTCAAAGCCGGCAGGAACAACGACCCGTGCTTTAGCAACACga > 1:4624748/1‑150 (MQ=255) aaGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCATTTATAGGAATAAACAGAACCTTGATTTTTTAGTCAACCCCGGCCCGAACAAACACCCGTGCGTTAGCAAAACga > 1:3278401/1‑150 (MQ=255) ggTCTGGGTATTATCTGAATTTTTAACTTCAACAGCTTGGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTTATCGTAATACCCTGCCCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACgaga < 2:2379675/150‑1 (MQ=255) ggTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACTTTGATCGTAATAACCAGACCGTTGATTTTTACGTCAACGCCGGCAGGACCAACGACCGGTGCTTTAGCAACACgaga > 1:4283038/1‑150 (MQ=255) gttattatCTGAATTTTTAACTTCAACAGAATGGTTGAGTGTACGAGTCAGCTCGCCTTTTTTACATTTGATCGTAATAACCTGACCGTTGATTTTTACGACAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACAtttt < 1:1844997/148‑1 (MQ=255) ggTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTTCCATTTATAGTAATAAACAGACCGTTTATTTTTAAGTCAAACCCCGCAGGAACAAAGACCCGTGCTTTATCAACACCAGCCAtttt > 1:2833065/1‑150 (MQ=255) ttatCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACTTTTATAGTAATAAACAGACCGTTTTTTTTTTAGTAAACGCCGGCAGGGACAACCACCCGTGGGTTAGCAAAACCCGACAatttttaa > 1:3660359/1‑148 (MQ=255) ttatCTGATTGTTTAACTTAACCAGCATGTTTTAGAGTACGAGTCTGCGCGCCTTTTTTACCTTTTTTGGTAATACCGTGACCTTTTTTTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTtcc < 1:4502210/150‑1 (MQ=255) atCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACTTTGATAGTAAAAAACAGACCGTTGATTTTTAAGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGCGACATTTTTtcctc > 2:1175846/1‑150 (MQ=255) cTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTAACGTTTTTCGTAATAAACAGACCCTTGATTTTTAATTAAAAGCCGGCCGGAAACACGACCCGTGCGTTATCAAAACCAGACAatttttgagacg > 1:2400357/1‑144 (MQ=255) tgattttttAAATTCAACAGCATCGTTTAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTTATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGa < 2:1280834/144‑1 (MQ=255) tGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGa < 2:525757/150‑1 (MQ=255) tcATTTTTAACTACAACAGAATCTTTGAGAGTACTAGTCAGCTCGCCTTTTTTACCTTTTATCTTAATAACCTGCCGTTTGTTTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGAt < 2:24558/149‑1 (MQ=255) gCATGTTTAACTTCAACAGCATCTTTGAGAGTACTTGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACGGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGAt < 2:2811943/150‑1 (MQ=255) ttttAACTTCAACAGAATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAgg < 2:1010366/149‑1 (MQ=255) tAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACTTTGATAGTAATAACCTGACCGTTGATTTTTAAGTCAACGCCGGCCGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTATGCTa > 1:297401/1‑150 (MQ=255) aCTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTTATCGTAATAAACTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGAAATTTTTTACTCCGATTAGGCTACg > 2:2137196/1‑150 (MQ=255) cTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACAAGAGACATTTTTTCCGCCGCTTAGGCTACGt > 2:3970391/1‑150 (MQ=255) cTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCAGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAAAGACCGGTGCTTTAGCAAAACGAGACATTTTTTCCTCCGATTAGGCTACGt > 2:143821/1‑150 (MQ=255) cAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGGGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGc > 2:3436107/1‑150 (MQ=255) cAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACTTTGATAGTAAAAACCGGACCCTTGATTTTTACGTCAACGCCCGCAGGAAAAACGACCCGTGCTTTAGCAACACCAGACAATTTTTACTCCGATTAGGCTACGTAGc > 1:2629004/1‑150 (MQ=255) aGCATCGTTGAGAGTACGAGTCAGCTCGCGGTTTTTACCTTTGATCTTAATAACCTGACCTTTGATTTTTACGTAAACGCGGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGAt < 1:3050532/150‑1 (MQ=255) gCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTACTACGCTTAGGCTACGTAGCAGATa > 2:1767604/1‑150 (MQ=255) gCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACTTTGATAGTAATAACCTGACCGTTTATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATa > 2:4550076/1‑150 (MQ=255) aTCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAAt < 2:3510060/150‑1 (MQ=255) tgtttGAGAGTACGTGTCCGCTCGCGTTTTTTACCTTTTATCGTAATACCCTGACGTTTTATTTTTACGACAACGCCGGCCGCAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAAtt < 1:1614222/147‑1 (MQ=255) cGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAAttt < 2:2683545/150‑1 (MQ=255) gTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTc < 2:1932777/150‑1 (MQ=255) gTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCGTTGATCGTAAAAACCAGACCGTTGATTATTACGTCAACGCCCGCCGGAACAACCACCCGTGCGTTAGCAACACCAGACAATTTTTCCTCCGAATAGGCTACGTAGCAGATAAttta > 1:1859024/1‑149 (MQ=255) gTTGAGAGTACGAGTCAGCTCGCCGTTTTTAACTTTTATAGTAATAAACAGAACGTTTATTTTTTAGTCAAAGCCGGCCGGAACAAAGACCCGTGCTTTAGCAACACGAGACATTTTTTACTACGATTAGTCTACGTAGCAGATAAttta > 1:3849605/1‑149 (MQ=255) gagaGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGcc < 2:1806233/150‑1 (MQ=255) acgataaaGCTCGCGTTTTTTACTTTTTATCTTAATAACATGACCTTTTATTTTTACTTCACCGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAg < 1:4236896/143‑1 (MQ=255) aCGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGACAACGCCGGCTGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAg < 2:3626156/150‑1 (MQ=255) cGAGTCAGCTCGCCTTTTTTACCTTTGATCGTAATAACCTGACCTTTGATTTTTACGTCAACGCCGGCTGGAACCACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGa < 2:4296/150‑1 (MQ=255) gAGTCAGCTCGCCGTTTTTACCTTTTATCGTAATAACCTGACCGTTGATTTTTAAGTCAACGCCGGCAGGAACAACGACCGGGGCTTTAGCAACACGAGAAATTTTTTACTCCGATTAGGCTACGTAGCAGATAAATTATCCACCAAGaa > 2:2951067/1‑149 (MQ=255) gAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCAGACCGTTGATTTTTAAGTCAACGCCGGCAGGAACAACGAACGGTGCGTTAGCCACACGAGACAATTTTTCCTCCGCTTAGGCTACGTAGCAGATAAATTAGCCACCAATAc > 2:2822216/1‑150 (MQ=255) cAGCTCGCCGTTTTTACCTTTTATAGTAATAACCAGACCGTTGATTTTTTAGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGAAATTTTTTAATCCGATTAGGCTACGTAGCAGATAAATTAGCCACCAAGACCAGc > 2:896439/1‑150 (MQ=255) aGCTCGCCGTGTTTACCATTGATCGTAATAACCAGACCCTTGATTTTTAAGTCAACGCCCGCAGGAACAACCACCCGTGCTTTAGCAACACCAGACATTTTTTACTCCGATTAGGCTACGTAGCAGATAAATTCGCCACCAAaaccaacc > 2:1996464/1‑150 (MQ=255) gCTCGCCGTTTTTACCTTTGATCGTAATAACCGGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCt < 2:2546303/150‑1 (MQ=255) cGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGgc < 2:3240074/150‑1 (MQ=255) gCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGgcg < 2:1490143/150‑1 (MQ=255) gttttttCCTTTTTATCGTAATAACCTGACCTTTTATTTTTACGACAACGCCGGCAGTAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGgcgcg < 1:3225492/148‑1 (MQ=255) cGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGgcgcg > 2:3571574/1‑150 (MQ=255) tttttACCTTTGATCGTAATACCCTGCCCGTTTATTTTTCCGTCAACGCCGGCAGTAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCt < 1:4532287/150‑1 (MQ=255) tttttACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCt > 1:3187421/1‑150 (MQ=255) ttGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCa > 2:4650653/1‑150 (MQ=255) tGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGATTTAGAAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAg > 2:4015057/1‑150 (MQ=255) gATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGt > 1:1765039/1‑150 (MQ=255) gATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGt > 1:2208209/1‑150 (MQ=255) | ACCATTGAGTTCAGCAGGGCACGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTTTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGT > CP009273/3439273‑3439571 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |