| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,439,443 | G→T | 11.9% | I19I (ATC→ATA) | rplF ← | 50S ribosomal subunit protein L6 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,439,443 | 0 | G | T | 11.9% | 676.0 / 9.7 | 276 | I19I (ATC→ATA) | rplF | 50S ribosomal subunit protein L6 |
| Reads supporting (aligned to +/- strand): ref base G (112/115); new base T (21/28); total (133/143) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.34e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 282 total aligned reads displayed.
CGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAGA > CP009273/3439294‑3439592 | cgcgcgGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTg > 2:2731991/1‑150 (MQ=255) gcgcgGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGa < 1:771870/150‑1 (MQ=255) gcgGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGAtt < 2:1731765/150‑1 (MQ=255) cgGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGAttt < 1:2727590/150‑1 (MQ=255) cAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTCCGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTAAGt > 2:2553456/1‑150 (MQ=255) gCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCa < 2:168518/150‑1 (MQ=255) tgtgCCCAACCGTCTGCGTAACCCTCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACg < 2:4062172/150‑1 (MQ=255) gCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCg < 1:2319815/150‑1 (MQ=255) gCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCg > 2:1902315/1‑150 (MQ=255) cAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTAACTTTGATCGTAATAAACTGACCGTTGATTTTTAAGTCAAAGCCGGCa > 2:4368241/1‑150 (MQ=255) aCCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑GTTTAACTTTTATCGTAATAAACAGAACCTTGATTTTTAAGTGAACGCCGGCAgg > 1:2811943/1‑150 (MQ=255) tCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGaaca < 2:1259652/150‑1 (MQ=255) tCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGaaca < 2:3597055/150‑1 (MQ=255) tGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGaacaac < 1:510066/150‑1 (MQ=255) tGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCGTTGATCGTAATAAACTGACCGTTGATTTTTACGTCAACGCCGGCAGGaacaaa > 2:282/1‑149 (MQ=255) tGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑GTTTACCTTTGATAGTAATAAACAGACCGTTTAATTATAAGTAAAAGCCGGCAGGaacaac > 1:1948409/1‑150 (MQ=255) tAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCAGACCGGTGTTTTTTAAGTCAAAGCCGGCAGGAACAACGAcc > 1:2952869/1‑150 (MQ=255) tAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTAACTTTGATCGGAATAACCTGACCGTTTATTTTTACGTCAACGCCGGCAGGaaaaaactcc > 1:4203533/1‑145 (MQ=255) aCCATCACGCGGACCTATGGTCTGTTTTTTATATGCATTTTTAAATTCAACATCATCTTTGTTAGTACTATTCAGCTCGCCGT‑TTTTACCTTTTATCGTAATAACCTGACCGTTGATTTTTACGTAAACGCCGGCAGTAACAACGACCgg < 2:2921705/150‑1 (MQ=255) cATCCCGCGGACCGAAGGTCTGGGTATTATCGGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCCGCTCGCCTT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCCGGAACAACGACCGGTg < 2:1426032/150‑1 (MQ=255) cACGCGGACCGATGGTCAGGGTTTTATCTGCATTTTTAACTACAACAGCATCGTTGAGAGTCCGTGTCAGCGCGCCTT‑TTTTACCTTTTATCGTAATAACCTGCCCTTTGATTTTTACGTCAACGCCGGCCGCAACCACGACCGGTGCtt < 2:877152/150‑1 (MQ=255) cACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTAACATTTAAAGTAAAAACCTGAACCTTGATTTTTAAGTCAAAGCCCGCAAGAACAAAGACCAGTGcat > 1:3509984/1‑148 (MQ=255) cgcgGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTa < 2:2213747/150‑1 (MQ=255) aCCGATGGTCTGGTTTTTATCTGCATGTTTAACTTCAACCGCATGGTTGAGTGTACGAGTCCGCTCGCCGT‑TTTTCCCTTTGATCTTAATAACCGGACCTTTGATTTTTCCGTCACCGCCGGCAGGAACAACGACCGGTGCTTTAGCAac < 1:1126146/150‑1 (MQ=255) ccGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑GTTTAACTTTGATCGGAATAACCAGACCGTTGATTTTTTAGTGAACGCCGGCAGGAACAACCACCCGGGCGTTTGCAcca > 1:4623028/1‑150 (MQ=255) cGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGGGCTTTAGCAacac > 2:4438935/1‑150 (MQ=255) gAAGGTCAGGGTATTATCTGCATTTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGGTCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACg < 2:2622331/150‑1 (MQ=255) gAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGTGTTTTACATTT‑ATAGTAATAAACAGACCGTTTATTTTTAAGTCAACGCCGGCAGGAAAAACCACCCGTGCTTTAGCCACACg > 1:1332471/1‑150 (MQ=255) gAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACg > 1:4298729/1‑150 (MQ=255) aaGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCATTTATAGGAATAAACAGAACCTTGATTTTTTAGTCAACCCCGGCCCGAACAAACACCCGTGCGTTAGCAAAACga > 1:3278401/1‑150 (MQ=255) aaGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑GTTTACCTTTGATCGTAATAAACAGACCGGTGATTTTTAAGTCAAAGCCGGCAGGAACAACCACCGGTGCGTTATCAACACgc > 1:907626/1‑149 (MQ=255) ggTCTGGGTATTATCTGAATTTTTAACTTCAACAGCTTGGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTTATCGTAATACCCTGCCCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACgaga < 2:2379675/150‑1 (MQ=255) tCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑GTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTAAGTCAACGCCGGCAGGAACAACGACCGGTGCTGTAGCAACACGAGACa > 1:1832304/1‑150 (MQ=255) aGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACCAGACaat > 2:4006760/1‑148 (MQ=255) gttattatCTGAATTTTTAACTTCAACAGAATGGTTGAGTGTACGAGTCAGCTCGCCTT‑TTTTACATTTGATCGTAATAACCTGACCGTTGATTTTTACGACAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACAtttt < 1:1844997/148‑1 (MQ=255) ttatCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTAACTTTTATAGTAATAAACAGACCGTTTTTTTTTTAGTAAACGCCGGCAGGGACAACCACCCGTGGGTTAGCAAAACCCGACAatttttaa > 1:3660359/1‑148 (MQ=255) ttatCTGATTTTTTAACTTCAACAGCATCGTTGAGTGTACGAGTCAGCTCGCCTT‑TTTTACCTTTTATCTTAATACCCTGACGTTTTATTTTTACGACACCGCCGGCCGGAACCACGACCGGTGCTTTAGCAACACGAGACATTTTTtcc < 1:4502146/150‑1 (MQ=255) atCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTtcctc < 2:4270457/150‑1 (MQ=255) atCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTAACTTTGATAGTAAAAAACAGACCGTTGATTTTTAAGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGCGACATTTTTtcctc > 2:1175846/1‑150 (MQ=255) cTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑GTTTAACGTTTTTCGTAATAAACAGACCCTTGATTTTTAATTAAAAGCCGGCCGGAAACACGACCCGTGCGTTATCAAAACCAGACAatttttgagacg > 1:2400357/1‑144 (MQ=255) tcATTTTTAACTACAACAGAATCTTTGAGAGTACTAGTCAGCTCGCCTT‑TTTTACCTTTTATCTTAATAACCTGCCGTTTGTTTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGAt < 2:24558/149‑1 (MQ=255) aTGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCTTTGATTTTTACGTCAACGCCGGCAGTAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTa < 2:1477585/150‑1 (MQ=255) tGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTTCATTTTTTCGTAATAAACTTACCCTTTTTTTTTTAGTGAAACCCGGGAGGAACAAAGACCGGGGGTTTTGCAAAAACAGACAATTTTTAGTACGATTat > 1:1231493/1‑149 (MQ=255) ttttAAATTCAACAGCATCGTTGAGATTACGAGTCAGCTCGCCTT‑TTTTACATTTGATCGTAATAACCTGACCGTTTATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAgg < 1:2738458/149‑1 (MQ=255) tAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTAACTTTGATAGTAATAACCTGACCGTTGATTTTTAAGTCAACGCCGGCCGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTATGCTa > 1:297401/1‑150 (MQ=255) aCTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTTATCGTAATAAACTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGAAATTTTTTACTCCGATTAGGCTACg > 2:2137196/1‑150 (MQ=255) cTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACAAGAGACATTTTTTCCGCCGCTTAGGCTACGt > 2:3970391/1‑150 (MQ=255) cAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTAACTTTGATAGTAAAAACCAGACCGTTGATTTTTAAGTCAACCCCGGCAGGAAAAACGACCGGTGCGTTAGCAACACCAGACATTTTTTACACCGATTAGGCAAAGTAGc > 1:2629046/1‑150 (MQ=255) aGCATCGTTGAGAGTACGAGTCAGCTCGCGGT‑TTTTACCTTTGATCTTAATAACCTGACCTTTGATTTTTACGTAAACGCGGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGAt < 1:3050532/150‑1 (MQ=255) gCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTAACATTGATAGTAATAACCAGACCCTTGTTTTTTAAGTCAAAGCCCGCAGGAACAACCACCCGTGCTTTAGCAACACGAGACATTTTTTACTCCGATTATGCTACGTAGCAGATa > 1:4677654/1‑150 (MQ=255) aTCGTTTATATTACGTGTCAGCTCGCCGT‑TTTTACCTTTGATCTTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAAt < 2:3509984/150‑1 (MQ=255) aTCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACCACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTAAGTAGCAGATAAt > 2:2647176/1‑150 (MQ=255) tgtttGAGAGTACGTGTCCGCTCGCGTT‑TTTTACCTTTTATCGTAATACCCTGACGTTTTATTTTTACGACAACGCCGGCCGCAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAAtt < 1:1614222/147‑1 (MQ=255) tCGTTGAGAGTACGAGTCTGCTCGCGGT‑TTTTACCTTTGATCGTATTACCCTGACCGTTGATTTTTCGGTCACCGCCGGCCGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAAtt < 1:1507459/150‑1 (MQ=255) gTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCGTTGATCGTAAAAACCAGACCGTTGATTATTACGTCAACGCCCGCCGGAACAACCACCCGTGCGTTAGCAACACCAGACAATTTTTCCTCCGAATAGGCTACGTAGCAGATAAttta > 1:1859024/1‑149 (MQ=255) gagaGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGcc < 2:1756768/150‑1 (MQ=255) gagaGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGcc < 2:1806233/150‑1 (MQ=255) gTACGCGTCAGCTCGCCTT‑TTTTACCTTTTATCGTAATACCCTGCCCTTTGATTTTTCCGACAACGCCGGCAGCAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGccacca < 2:412400/150‑1 (MQ=255) aCGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGACAACGCCGGCTGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAg < 2:3626156/150‑1 (MQ=255) cGAGTCAGCTCGCCTT‑TTTTACCTTTGATCGTAATAACCTGACCTTTGATTTTTACGTCAACGCCGGCTGGAACCACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGa < 2:4296/150‑1 (MQ=255) aGCTCGCCGT‑TTTTACCTTTGATCGGAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCCGTGCTTTAGCAACACGAGACATTTTTTCCGCCGATTAGGCTACGTAGCAGATCATTTCGCCCCCAAGACCAGcc > 2:1506966/1‑150 (MQ=255) gCTCGCCGT‑TTTTACCTTTGATCGTAATAACCGGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCt < 2:2546303/150‑1 (MQ=255) cTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTg < 2:3404652/150‑1 (MQ=255) tCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTgg > 2:1363986/1‑150 (MQ=255) gtt‑ttttCCTTTTTATCGTAATAACCTGACCTTTTATTTTTACGACAACGCCGGCAGTAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGgcgcg < 1:3225492/148‑1 (MQ=255) cGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGgcgcg > 2:3571574/1‑150 (MQ=255) t‑ttttACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCt > 1:3187421/1‑150 (MQ=255) tACCTTTGATCGTAATAACCTGACCGTTGATTTTTCCGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCAc < 2:530554/150‑1 (MQ=255) tttGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATc < 2:1948409/150‑1 (MQ=255) ttGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCa > 2:4650653/1‑150 (MQ=255) ttGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCa < 2:4493519/150‑1 (MQ=255) gATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGt > 1:2208209/1‑150 (MQ=255) aTCGTAATACCCTGACCGTTTTTTTTTAGGTCAACGCCGGCAGGAACCACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTc < 1:4438935/150‑1 (MQ=255) aTCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTc < 2:2629004/150‑1 (MQ=255) tcttaataaCCTGACCGTTTTTTTTTCCGTCACCGCCGGCAGTAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCa < 1:3632107/147‑1 (MQ=255) tCGTAATAACCTTACCGTTGATTTTTCCGTCAACGCCGGCAGGAACCACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCa < 1:2859755/150‑1 (MQ=255) cttaataaCCTGACGTTTGATTTTTCCGTCAACGCCGGCAGTAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCAt < 1:2585881/148‑1 (MQ=255) taataaCCTGACCGTTGATTTTTCCGTCACCGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATaa < 1:1740660/150‑1 (MQ=255) taataaCCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATaa > 2:3190719/1‑150 (MQ=255) taataaCCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATaa > 2:897198/1‑150 (MQ=255) aataaCCTTACCGTTTATTTTTACGACAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAac < 1:896525/150‑1 (MQ=255) aataaCCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAac < 1:2376523/150‑1 (MQ=255) aataaCCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAac > 2:1028470/1‑150 (MQ=255) taaCCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAacac > 2:3068177/1‑150 (MQ=255) aaCCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACAcc > 2:2084396/1‑150 (MQ=255) aaCCTGACCGTTGA‑TTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCt < 2:4745388/150‑1 (MQ=255) ccTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCtt < 1:4707999/150‑1 (MQ=255) cTGACCGTTGATTTTTCCGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCttt < 1:4312569/150‑1 (MQ=255) tGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCTTTa > 2:203241/1‑150 (MQ=255) gACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCTTTag > 1:1079903/1‑150 (MQ=255) aCCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCTTTaga > 2:3871830/1‑150 (MQ=255) aCCGTTGATTATTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGAAACACGAGACAAATTATCAACCGATTAGGCTACGTAGCAGATAATTACGCCACCAAGACCAGCCAGGCGCGCTGCACGAACAGTCATAACACCAATaga > 2:4591631/1‑150 (MQ=255) ccGTTGATTTTTCCGTCAACGCCGGCCGGAACCACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCTTTagag < 2:809024/150‑1 (MQ=255) ccGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCTTTagag < 2:1332471/150‑1 (MQ=255) ttGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTa > 1:452070/1‑150 (MQ=255) tGATTTTTACGTCAACGCCGGCAGGACCAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAg < 1:4238572/150‑1 (MQ=255) tGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAg > 1:3426779/1‑150 (MQ=255) gATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAGa > 1:4460531/1‑150 (MQ=255) gATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAGa > 2:2808948/1‑150 (MQ=255) gATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCGTTAGAGGTAGa > 2:3380748/1‑150 (MQ=255) | CGCGCGGTACCAGCCTGTGCCCAACCGTCTGCGTAACCATCACGCGGACCGAAGGTCAGGGTATTATCTGCATGTTTAACTTCAACAGCATCGTTGAGAGTACGAGTCAGCTCGCCGT‑TTTTACCTTTGATCGTAATAACCTGACCGTTGATTTTTACGTCAACGCCGGCAGGAACAACGACCGGTGCTTTAGCAACACGAGACATTTTTTCCTCCGATTAGGCTACGTAGCAGATAATTTCGCCACCAAGACCAGCCTGGCGCGCTGCACGATCAGTCATAACACCTTTAGAGGTAGA > CP009273/3439294‑3439592 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |