| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,441,606 | G→T | 15.3% | intergenic (‑98/+67) | rplN ← / ← rpsQ | 50S ribosomal subunit protein L14/30S ribosomal subunit protein S17 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,441,606 | 0 | G | T | 15.3% | 426.9 / 19.3 | 170 | intergenic (‑98/+67) | rplN/rpsQ | 50S ribosomal subunit protein L14/30S ribosomal subunit protein S17 |
| Reads supporting (aligned to +/- strand): ref base G (85/50); new base T (2/32); total (87/83) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.92e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 170 total aligned reads displayed.
CGTGCACCGGAGTTGTCGGCGACGTTCAGCATAGTCTGTTCTTGGATCATTTTAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAAC > CP009273/3441459‑3441753 | cGTGCACCGGAGTTGTCGGCGACGTTCAGCATAGTCTGTTCTTGGATCATTTTAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGat > 2:761617/1‑150 (MQ=255)cGTGCACCGGAGTTGTCGGCGACGTTCAGCATAGTCTGTTCTTGGATCATTTTAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGat > 2:378270/1‑150 (MQ=255) gTGCACCGGAGTTGTCGGCGACGTTCAGCATAGTCTGTTCTTGGATCATTTTAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGata > 2:3806094/1‑150 (MQ=255) gTGCACCGGAGTTGTCGGCGACGTTCAGCATAGTCTGTTCTTGGATCATTTTAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGata > 2:384020/1‑150 (MQ=255) cACCGGAGTTGTCGGCGACGTTCAGCATAGTCTGTTCTTGGATCATTTTAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATgg < 1:3762529/150‑1 (MQ=255) cACCGGAGTTGTCGGCGACGTTCAGCATAGTCTGTTCTTGGATCATTTTAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAAAACCGCTTCAAGTATATgg > 1:4009225/1‑150 (MQ=255) cACCGGAGTTGTCGGCGACGTTCAGCATAGTCTGTTCTTGGATCATTTTAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATACCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGTATATgg > 1:4009215/1‑150 (MQ=255) ttGTCGGCGACGTTCAGCATAGTCTGTTCTTGGATCATTTTAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGaaaa > 1:3685605/1‑150 (MQ=255) tCGGCGACGTTCAGCATAGTCTGTTCTTGGATCATTTTAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAAt < 2:781657/150‑1 (MQ=255) ggCGACGTTCAGCATAGTCTGTTCTTGGATCATTTTAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATaa > 1:2921627/1‑150 (MQ=255) cGACGTTCAGCATAGTCTGTTCTTGGATCATTTTAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAAc < 2:470699/150‑1 (MQ=255) cGTTCAGCATAGTCTGTTCTTGGATCATTTTAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGc > 1:4271785/1‑150 (MQ=255) cGTTCAGCATAGTCTGTTCTTGGATCATTTTAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGc < 2:1833932/150‑1 (MQ=255) gTTCAGCATAGTCTGTTCTTGTATCATTTTAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCt < 2:2062378/150‑1 (MQ=255) gTTCAGCATAGTCTGTTCTTGGATCATTTTAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCt > 2:1859733/1‑150 (MQ=255) tCAGCATAGTCTGTTCTTGGATCATTTTAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCa > 2:274465/1‑150 (MQ=255) aGCATAGTCTGTTCTTGGATCATTTTAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCAtt > 2:4735890/1‑150 (MQ=255) cTGTTCTTGGATCATTTTAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGcc > 2:2581056/1‑150 (MQ=255) ggATCTTTTTAGTGCTCCGCTAATGACAACTACTACTGAGACCCTAAAATCAGGTCTTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGTTTATGGTTATAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTc < 2:1668370/150‑1 (MQ=255) gATCATTTTAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTG‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAATCGGCTCATTTCTGAGCCGGTTATTCg > 1:2323529/1‑150 (MQ=255) aTCATTTTAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTAGt > 1:3762272/1‑150 (MQ=255) tCATTTTAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATACCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTGGTa > 1:2433356/1‑150 (MQ=255) aTTTTAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTGTATTCGTAtt > 1:2639989/1‑150 (MQ=255) tttgTGCTCCGATAATGTAAACTAATACTGAGACCCTAAAATCTGGTCTTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCCCTTCAAGTTTATGGTTATAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTgag < 2:250394/147‑1 (MQ=255) ttAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTATGAGCCGTTTATTCGTAtttat > 1:937979/1‑147 (MQ=255) tcgTGCTCCGATATTGTAAACTACTACTGACACCCTAAAATCTGTTCTTT‑AAAAATCCCAATTTCGTGGGCGCGGAATTATAACACCGCTTCAAGGATTTGGTTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTgaga < 1:2744928/148‑1 (MQ=255) tAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTgaga > 2:1396898/1‑150 (MQ=255) gTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTgagaga > 2:879954/1‑150 (MQ=255) gCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTTAGTGAgt > 2:3247624/1‑150 (MQ=255) cTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAgtg > 2:4452667/1‑150 (MQ=255) cccGCTAATGTCAACTACTACTGACACCCGAAAATCAGGTCTTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTACAAGCATATGGGTATAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAgtgt < 2:4128080/149‑1 (MQ=255) ctatattGTAAACTACTACTGAGACCCTAAAATCAGGTCTTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGATTCATGGATATGGGTATAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTAc < 2:1139272/144‑1 (MQ=255) gCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACt > 2:1573525/1‑150 (MQ=255) atAATGTCAACTAATACTGAGACCCTAAAATCAGTGCGTA‑AAAAATCCCCATCTCGCGGGCGCGGCATTATAACCCCGCTACAAGGATATGGGTATAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGGGTACTg < 2:4567715/149‑1 (MQ=255) aTGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTAt > 2:2764890/1‑150 (MQ=255) tGTCAACTACTACTGATACCCTAAAATCAGGTCTTA‑AAAAACCCCCATACGGCGGGGGCTGAATTATAACACCTATTCTTGTTTATGGTTATAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTAtt < 1:3356365/150‑1 (MQ=255) tGTCAAATACTACTTAGACCCAAAAAT‑GTGTGGTTAAAAAATCCCTTTTTGGAGGGGGGGTAATTTTAAAACCGTTAAATTGTTTTTGGTAAAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACGGTAtt < 1:3356285/150‑1 (MQ=255) gTCAACAACTCCTGCGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGAATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTa < 2:4187604/150‑1 (MQ=255) cAAATACGACTCTGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGCGGGCGCGGCATTATACCACCGATTCAAGGATATGGTTATAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTGTTACa < 2:600922/150‑1 (MQ=255) aaCTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAg > 2:3207505/1‑150 (MQ=255) actactactGAGACCCGAAAATCAGGTCGTT‑AAAAAACCCCCTAACGAGGGCGCGGCAGTATAACACCCCTTCAAGGATATGGGGCCAAAAAATAAACCGCTCATGTCTGAGCCGTTTATTCGGATTGAGAGAGTGGACGGTATTGCAGa > 1:4138744/1‑150 (MQ=255) ctactactGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGaa > 1:344616/1‑150 (MQ=255) tactactGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTAAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAAc > 1:1094082/1‑150 (MQ=255) actactGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAAcc > 1:778928/1‑150 (MQ=255) tGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTAGTATTGAGAGAGTGTACTTTATTAAAGAACCGCttt > 1:3049888/1‑150 (MQ=255) ggagcCCCCAAAATCCGGTCGTT‑AAAAACCCCCATATCGCGGGCGCGGCATTATACCCCCGCTTCAAGTATTTGGGTATAAAAAAAAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCttt < 1:252806/149‑1 (MQ=255) tagaCCCTAAATTCTGGTCTTT‑AAAAATCCCCATAGCGGGGGCGCGGAATTATAACACCGCTTCAAGTATTTGGTTATAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTtc < 2:3225429/149‑1 (MQ=255) ccccTAAAATCTGGTCGTT‑AAAAATCCCCTTCTCGAGGGCGCGGCATTATAACACCGCTTCACGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTctct < 2:1435842/149‑1 (MQ=255) aCCCTAAAATCTGGTCTTT‑AAAAATCCCAATATCGCGGGCGGGGAATAATAACACCGCTTCATGGATATGGGTATAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTctct < 2:3321570/150‑1 (MQ=255) cccGAAAACCTGGTCTTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTACACGTATATGGTTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTa < 1:1833717/150‑1 (MQ=255) cGAAAATCAGGTCTTA‑AAAAATCCCCATATCGCGGGCGCGGCATTATAACACCGCTTCAAGGATTTGGTTAGAAAAAATACACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACa < 2:4395917/150‑1 (MQ=255) aaatTCCGGTCTTA‑AAAAACCCCCAGTGCGGGGGCGCGGCTTTAAAACCCCGTTTAATGTTTTTGTTTAAAAAAAAAACACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAAc < 1:462715/150‑1 (MQ=255) aaaaTCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGAATTATAACACCGCTTCATGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAAc < 2:2232924/150‑1 (MQ=255) aaTCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTTAGAGAGTGTACAGTATTACAGAAACGCTTTCTCTACAAcgc > 1:2354472/1‑150 (MQ=255) ctggTCGAT‑AAAAATCCCCAAATCGAGGGCGCGGCATTATACCACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGaa < 1:1569232/148‑1 (MQ=255) aGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTGTTACAGAACCGCTTTCTCTACAACGCGAAc > 2:583905/1‑150 (MQ=255) aGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAAc > 2:2951148/1‑150 (MQ=255) gTCGTT‑ACAACTCCCCATTTCGCGGGCGCGCCATTATCACACCGCAACACGTATTGGTTTATAAAAAAAACACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCa < 1:3288238/150‑1 (MQ=255) tttttaaaaaaCCCCCAGATCGGGGGGGCGGCTTTATCCCACCGATCAATGGATTTGGTTATAAAAAAAACACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCa < 1:3288258/144‑1 (MQ=255) tCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGGGAGTGGACTGTATTACAGATCCGCTTTCTCTACAACGCGAACCAg > 2:30288/1‑150 (MQ=255) tCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAg > 2:29866/1‑150 (MQ=255) tt‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCACGGATATGGGAAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGt < 2:1125420/150‑1 (MQ=255) t‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTGTATTAGTATTGAGAGAGTGTACTGTATTACAGAACCGCTGTCTCTAAAACGCGAACCAGCggc > 1:1184388/1‑148 (MQ=255) aaaaaTCCCAATATCGGGGGCGCGGCATTATAACCCCGATTAAAGTTTTTGGTTATAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTcc < 1:2943387/150‑1 (MQ=255) aaaaTCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTATATAAAACGCGAACCAGCGTCCa > 1:1339219/1‑150 (MQ=255) aaaTCCCAATATCGAGTGCGCGGCATTATAACACCGTTAAAAGTATATGGTTATAAAATATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGTGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCat < 2:559797/150‑2 (MQ=255) aaTCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAgg > 2:3811198/1‑150 (MQ=255) cccATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGTGAGAGTGTACTGTATTACAGAACCGCTTTCTCTAAAACGCGAACCAGCGTCCAGGAttt > 1:1744927/1‑150 (MQ=255) cccATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGAtgt > 2:3912327/1‑148 (MQ=255) ccATATCGTGGGCGCGGAATTATACCCCCGCTTCAGGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTa < 1:2981846/150‑1 (MQ=255) tatCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTAGTATTGAGTGAGTGTACTGTATTAAAGAACCGCGTTCTCTACAAAGCGAACCACCCTGCAGGATTTAGta > 1:494554/1‑149 (MQ=255) atCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGTTATAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCt < 2:2321007/150‑1 (MQ=255) atCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCt > 2:4195413/1‑150 (MQ=255) tCGCGGGCGCGTCATTAAACCACCGATTAATGTATTGGTTTATAAAAAAAAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACGGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCtt < 1:3368119/150‑1 (MQ=255) tCGCGGGCGCGGCCTTATAACCCCGCTTCAAGGAGAGGGGTAGAAAAAATACACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCtt < 2:4619859/150‑1 (MQ=255) gcgcggggGCGGAATAAAAACACCGCTTAATGTATTTGGTAAAAAAAAAAAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCtt < 1:4446253/146‑1 (MQ=255) aGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGa > 2:3514337/1‑150 (MQ=255) ggCGCGGAATTATAACACCGCTTCAAGTTTTTGGGTATAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACa < 1:384020/150‑1 (MQ=255) ggCGCGGAATTATAACACCGCTTCAAGGATATGTGTATAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACa < 1:657486/150‑1 (MQ=255) gcgcaaTTAAACCACCGCTTCACTGATCTGGGTATAAAAAAAACACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCg < 1:523606/145‑1 (MQ=255) cgGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCgg > 1:285940/1‑150 (MQ=255) gCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACTGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGAc < 2:4679358/150‑1 (MQ=255) gCATTATAACACCGCTAATTTTTTTTGGTTATAAAAAATAAACGGATCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGAc < 1:1571556/150‑1 (MQ=255) tataACCCCGCTCCAAGGATATGGTTAGAAAAAATACACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCa < 2:3141329/150‑1 (MQ=255) tataACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCa > 2:1955923/1‑150 (MQ=255) aaaCCCCGCTTCATGTATTTGGTTATAAAAAAAACACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCAtt < 1:4386460/149‑1 (MQ=255) accacGGCTTCCAGGATATGGGTAGAAAAAATACACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTc < 2:3592536/148‑1 (MQ=255) aaCCCCGCTTCAAGGATATGGGTAGAAAAAATACACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGACCCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTc < 2:1026976/150‑1 (MQ=255) aaCACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTc > 2:2110427/1‑150 (MQ=255) aaCACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATGTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCCGGATTTAGTGGTGGACAGCGGGCGGCagtg > 2:4496188/1‑147 (MQ=255) acacCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTcg > 1:2236141/1‑150 (MQ=255) cacCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACGGGATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTcgc > 2:2057401/1‑150 (MQ=255) cGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGa > 1:3143901/1‑150 (MQ=255) cGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGa > 1:3144606/1‑150 (MQ=255) gattCATGGATATGGTTATAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGAt < 1:2675547/148‑1 (MQ=255) gCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTAGTATTGAGAGAGTGTACTGTATTACAGAAACGCTTTCTATACAACGCGAACCAGCGTCCAGGATTTATTGTTGGACAGCGGACGGCATTAGCGGAt > 1:1753005/1‑150 (MQ=255) cTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCCGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGAtt > 2:918207/1‑150 (MQ=255) ttCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGAttt < 2:1651180/150‑1 (MQ=255) aGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAAc > 2:4123339/1‑150 (MQ=255) aGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTGTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCAGTCGCGGATTTCAAc > 2:4123330/1‑150 (MQ=255) | CGTGCACCGGAGTTGTCGGCGACGTTCAGCATAGTCTGTTCTTGGATCATTTTAGTGCTCCGCTAATGTCAACTACTACTGAGACCCGAAAATCAGGTCGTT‑AAAAATCCCCATATCGAGGGCGCGGCATTATAACACCGCTTCAAGGATATGGGTAGAAAAAATAAACGGCTCATTTCTGAGCCGTTTATTCGTATTGAGAGAGTGTACTGTATTACAGAACCGCTTTCTCTACAACGCGAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAAC > CP009273/3441459‑3441753 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |