| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,779,319 | G→T | 12.3% | E234* (GAA→TAA) | gpmM → | phosphoglycero mutase III, cofactor‑independent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,779,319 | 0 | G | T | 12.3% | 582.2 / 10.6 | 237 | E234* (GAA→TAA) | gpmM | phosphoglycero mutase III, cofactor‑independent |
| Reads supporting (aligned to +/- strand): ref base G (120/75); new base T (4/38); total (124/113) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.55e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 246 total aligned reads displayed.
TCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGCTTCGCG > CP009273/3779170‑3779468 | tcatTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTTCAGGCTGCGTATGCTCGCGAC‑GAAAattatg > 1:3692154/1‑150 (MQ=255) catTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAAtgatga > 2:2229465/1‑150 (MQ=255) atTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGaa > 2:4298250/1‑150 (MQ=255) ggTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTTCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTc > 1:3527517/1‑150 (MQ=255) ggTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCGTCTGCTCGCGAC‑GAAAATGATGAATTc > 2:4363855/1‑150 (MQ=255) gTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCg < 1:3712070/150‑1 (MQ=255) tCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGt < 1:3277740/150‑1 (MQ=255) cGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTg > 1:334961/1‑150 (MQ=255) gTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGa < 1:1031016/150‑1 (MQ=255) gTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGa < 1:773627/150‑1 (MQ=255) ttACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGaa < 2:1139122/150‑1 (MQ=255) tactacGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGaaa < 2:353030/150‑1 (MQ=255) ctacGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGc > 2:4594324/1‑150 (MQ=255) tacGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCg > 2:1612129/1‑150 (MQ=255) tacGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCg < 1:4671628/150‑1 (MQ=255) cgATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCg > 1:4016933/1‑150 (MQ=255) gATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCgg > 2:4138086/1‑149 (MQ=255) gATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGt > 2:4138376/1‑150 (MQ=255) aTGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGtt > 2:813814/1‑150 (MQ=255) aTGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGtt < 2:392402/150‑1 (MQ=255) ggACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAACATGATGAATTCGTGCAAGCGACCGttct > 2:4198378/1‑148 (MQ=255) aCCGCTATACCGGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCTGGGCGAGTTCCAGGCCTATACCGCCGTTGCTGGTTTGCTGGCTGCTTATGCTCGCGAC‑TAAATTGATGAATTCGTGAAAGCGACCGTTATcc < 2:2465582/150‑1 (MQ=255) gATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCCTGCt > 1:1024456/1‑150 (MQ=255) gATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCGTATGCTCGCGAC‑GAAAATGATGAATTAGTGAAAGCGACCGTTATACGTGCt > 1:2421493/1‑150 (MQ=255) gTTGGGATCGCTTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCTAGTTCCAGGCCGATCCCGCCGTTGGTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAAGGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTc < 2:2137434/150‑1 (MQ=255) aTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAg > 2:4453530/1‑150 (MQ=255) cgcgTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGAc > 2:2960435/1‑150 (MQ=255) gcttAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTCCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATTAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGAcg < 2:2135509/147‑1 (MQ=255) tAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCgg > 2:752584/1‑150 (MQ=255) gAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATTCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCa > 2:3170007/1‑150 (MQ=255) gAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGcc > 1:1964877/1‑149 (MQ=255) gAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAAATCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCCGCCGCGGCa > 2:2476990/1‑150 (MQ=255) gAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAAAGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCa > 2:478454/1‑150 (MQ=255) aaaaaGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTTCTGGTTTTCAGGCTGCTTATTCTCGCGAC‑GCAAATTATGAATTCGTGAAAGAGACCGGTATCCGTGCTGAAGGTCAGCCAGACGCGGCaa > 1:1577592/1‑150 (MQ=255) aaaaGCTATTGACCGGCTGACTCGGGCGCTGGGCGATTTCCCGGCCTATCCCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACTAAAAATGATTAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCaa < 1:2719228/150‑1 (MQ=255) aGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGa > 1:1090015/1‑150 (MQ=255) gCTTATGACGTGCTGAGGCGGGCGCTGGGCGTGTTCCTGGCCTATACCGCGTTTGCTTGTTTGCAGGCTGCTTTTGCTCTCGAC‑‑TAAATTATGATTTCGTTAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAg < 1:1815269/150‑1 (MQ=255) ttATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGa > 1:347094/1‑150 (MQ=255) ttATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGa > 1:4333528/1‑150 (MQ=255) tATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGAc > 2:3127131/1‑150 (MQ=255) aTGACCTGCTGACTCTGGCGCTGGGCGTGTTCCAGGCCTATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑CAAAATTATTAATTCGTTAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACg < 1:656845/150‑1 (MQ=255) gACGTGCTGACTGTGGGGCTGGGCTTGTTCCAGGCCTATACCGGGGTTGGTGGTTTGCTGGTTGCTTAGGCTCGCGAC‑GAAAATTATTAATTCGTTAACGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGc < 1:3291868/150‑1 (MQ=255) gACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTTCAGGCTGCTTATTCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATACGTGCTGAAGGTCAGCCAGACGCGGCACAGGAAGACGGc > 1:1075957/1‑150 (MQ=255) ccggctgACGCTGGCGCTGGGCGAGGTCCCGGCCGATCCCGCGGTGGGTGGTTTGCTGGCTGCTTTTGCTCGGGAC‑TAAATTGTTTAATTGGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGa < 1:2125531/147‑1 (MQ=255) ctgctgACTGTGGCGCTGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑TAAAATTATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGAt < 2:1312089/150‑1 (MQ=255) tgttgACTGGGGCGCTGGGCGTGTTCCTGGCCGATACCGCGGTGGGTGTTTTGCTGGGTGTTTTTGCTCGCGAC‑TAAATTTTTTATTTGGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATg < 1:966759/147‑1 (MQ=255) gctgACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGc < 2:4297005/150‑1 (MQ=255) gctgACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATACGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGc > 1:2313465/1‑150 (MQ=255) cttaCTCTGGCGCAGGGCGTGTTCCTGGCCGATACCGCCGTTGCTGGTTTGCTGGCTGCTTTGGCTCGCGAC‑GAAAATGATTAATTCGTTAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCa < 2:536782/147‑1 (MQ=255) ctgACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGGTGGTTTTCAGGCTGCGTATTCTAGCGAC‑GAAAAATATTAATTAGTGAAAGCGACCGTTATCCGTGGTGTAGGTCAGCCCGACGCGGCCATGGAAGACGGCGATGCa > 1:2783093/1‑150 (MQ=255) ctgACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGTTTTGCAGGCTGCTTATGCTCGCTAC‑TAAAATTATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCa < 2:537919/150‑1 (MQ=255) tctGGCGCTGGGCGTTTTCCCGGCCTATCCCGCGTTTGGTGGTTTGCTGGCTGCTTATGCTCGCTAC‑TAAATTTTTGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGAt < 1:277228/150‑1 (MQ=255) gtGGCGCAGGGCTTGTTCAGGGCCTATCCGGCGGTGGTTGGTTTGATGGTTGTTTATGCGCGCGAA‑TAATTTTTTTAATTCTTTAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGAtt < 1:1266418/149‑1 (MQ=255) cgcAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTTCAGGCTGCTTATGCTCGCGAC‑GAAAAAGATGAATTCGTGAAAGCCACCGTTATCCGTGCAGAAGGTCACCCAGACGCGGCAAAGGAAGAAGGCGAATCAATGAttttaa > 1:3962102/1‑148 (MQ=255) cgcAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGGTATCCGGGCGGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCa > 2:4023151/1‑150 (MQ=255) ctgggCGAGTTCCCGGCCGATACCGCCGTTGCTGGTTTGCTGGCTGCTTATGCTCGCGAC‑GAAATTGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATg < 1:3037884/148‑1 (MQ=255) gggCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGaa > 2:4625620/1‑150 (MQ=255) ggCGTGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAAc < 2:3836566/150‑1 (MQ=255) ggCGAGTTCCAGGCCTATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAAc < 2:1445456/150‑1 (MQ=255) ggCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATTCTCGCGAC‑GAAAAAGATGAATTCGTGAAAGCGACCGTTATACGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTAATGAAc > 2:4414967/1‑150 (MQ=255) gAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCTGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTc < 2:2336466/150‑1 (MQ=255) gAGTTCCAGGCCGATACCGCCGTTGCAGGTTTTCACGCTGCGTATGAACCCCAC‑CAAAATGATGAAAAAGTAAAAACGACCGATAAACGTGCGGAAGGTCAGCCAGAAGCGGCAAATGAATACGGCGATTCACTGATTTTAATGAACATc > 1:1526330/1‑150 (MQ=255) aGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTcc < 2:173442/150‑1 (MQ=255) gTTCCAGGCCGATACCGCCGTTGCTGGTTTTCAGGCTGCTTATTCTAGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCCGACGCGGCAATGGAAGACGGCGATGCACTGATTTTAATGAACTTCCg > 1:2976555/1‑150 (MQ=255) cAGGCCGATACCGCCGTTGCTGGTTTGCTGGCTGATTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCt < 2:3800320/150‑1 (MQ=255) aGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTg > 2:3471888/1‑150 (MQ=255) aGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTg > 2:3638492/1‑150 (MQ=255) ggCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATTAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGa > 2:1757062/1‑150 (MQ=255) cctatcccgcggTTGCTGGTTTGCAGGCTGCTTTTGCTCGCGAC‑TAAATTTATTAATTCGTTAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGAcc < 2:1195531/144‑1 (MQ=255) ccGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGAcc < 2:3272421/150‑1 (MQ=255) cccgggtttGGTGTTTTGCAGGGTGTTTTTGCTCGCTAC‑TAAATTGATTAATTCGTTAACGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACcgcgcg < 1:3273850/143‑1 (MQ=255) aCCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑TAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACcgcgcg < 2:2829698/150‑1 (MQ=255) cgTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAACGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGa < 2:3740256/150‑1 (MQ=255) tGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAAt < 2:3517741/150‑1 (MQ=255) cTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCa > 2:1325211/1‑150 (MQ=255) tttGCTGGCTGTTTATGCTCGCGAC‑TAAATTGTTTAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCg < 1:3394204/150‑1 (MQ=255) ttGCTGGCGGCTTTTGCTCGCTAC‑TAAATTTTTTAATTCGTTAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGt < 1:523907/150‑1 (MQ=255) ttGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGt > 1:1677214/1‑150 (MQ=255) ttGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGt > 1:4247030/1‑150 (MQ=255) tGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTg > 2:467290/1‑150 (MQ=255) tggCTGCTTATGCTCGCGAC‑TAAATTTATGAATTCGTGAACGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCtt < 1:1044620/149‑1 (MQ=255) ggCTGCTTATGCTCGCGAC‑GAAAATTATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCttt < 1:752584/150‑1 (MQ=255) ctgctTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCg > 2:2639481/1‑150 (MQ=255) tATGCTCGCGAC‑GAAAATTATTAATTCGTCAACGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAAc < 1:923129/150‑1 (MQ=255) tGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGc > 2:1397541/1‑150 (MQ=255) gCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGTGCGTGAAATCACTCGTGCTTTCGTGAACGCt < 2:4259697/150‑1 (MQ=255) tCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGa > 2:4100195/1‑150 (MQ=255) cgcgAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGAt > 1:2214079/1‑150 (MQ=255) cgac‑gaAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGAttt < 1:1894436/150‑1 (MQ=255) gac‑taAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTc < 2:4016268/150‑1 (MQ=255) ac‑gaAAATGATGATTTCGTTAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCg < 1:252629/150‑1 (MQ=255) c‑gaAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGa > 2:2082712/1‑150 (MQ=255) aaaaTGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATg > 2:878139/1‑150 (MQ=255) aaaaTGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATg < 2:2055068/150‑1 (MQ=255) aaaTGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATgg > 1:1369756/1‑150 (MQ=255) aaTGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGc < 2:4098506/150‑1 (MQ=255) atgatgAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGCt > 2:2921233/1‑150 (MQ=255) atgaATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGACATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGCTTcg > 2:616591/1‑150 (MQ=255) atgaATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGCTTcg > 2:2295244/1‑150 (MQ=255) gaATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGCTTcgcg < 1:2307041/150‑1 (MQ=255) | TCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGAC‑GAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGCTTCGCG > CP009273/3779170‑3779468 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |