| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,801,112 | C→T | 11.0% | S116N (AGC→AAC) | waaQ ← | lipopolysaccharide core biosynthesis protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,801,112 | 0 | C | T | 11.0% | 644.0 / 52.8 | 209 | S116N (AGC→AAC) | waaQ | lipopolysaccharide core biosynthesis protein |
| Reads supporting (aligned to +/- strand): ref base C (80/106); new base T (9/14); total (89/120) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.25e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.95e-01 | |||||||||||
Only 100 of 215 total aligned reads displayed.
CATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTCGCACGCAGAGTTTTTATCAAC > CP009273/3800963‑3801261 | cATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGc > 2:2303153/1‑150 (MQ=255)cATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGc > 1:3324654/1‑150 (MQ=255) cTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑ttt < 1:294017/150‑1 (MQ=255) tAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑tttt < 1:2296041/150‑1 (MQ=255) ttacaggCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATTGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑ttttttt < 2:2572927/145‑1 (MQ=255) gcgcATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAAt < 1:4370992/150‑1 (MQ=255) cgcATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATa > 2:2822576/1‑150 (MQ=255) cgcATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATa > 2:782528/1‑150 (MQ=255) gcATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATAc < 1:3167147/150‑1 (MQ=255) tcttctTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCGAAGTGTGTGAAGC‑TTTTTTTCCAAATACCAt > 2:3226805/1‑150 (MQ=255) tcttcCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCAtgct < 1:4057446/150‑1 (MQ=255) cttcCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCAtgctg < 1:467616/150‑1 (MQ=255) tcCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTCAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGcc > 2:1596532/1‑150 (MQ=255) tcCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGcc > 1:3725496/1‑150 (MQ=255) tcCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGcc < 1:2134318/150‑1 (MQ=255) gCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGT‑TTTTTTTCCAAATACCATGCTGCCGATg > 1:1390925/1‑150 (MQ=255) cAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGa < 1:853888/150‑1 (MQ=255) cTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCAt > 2:459471/1‑150 (MQ=255) cTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCAt > 2:459125/1‑150 (MQ=255) cGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATaaa < 1:1126033/150‑1 (MQ=255) ggCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGT‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAg < 2:4756006/150‑1 (MQ=255) cGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGtt < 2:40967/150‑1 (MQ=255) tAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAAGACCATGCTGCCGATGACCATAAAGTTGc < 2:1018207/150‑1 (MQ=255) aaCTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCg > 1:842749/1‑150 (MQ=255) tCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGat < 2:3638186/150‑1 (MQ=255) aTTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATAtt < 1:3401924/150‑1 (MQ=255) ttgttgTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATAttt > 2:474937/1‑150 (MQ=255) ttgttgTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATAttt < 2:4283382/150‑1 (MQ=255) ttgttgTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATAttt < 2:1121666/150‑1 (MQ=255) tgttgtGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATAtttt > 1:2703679/1‑150 (MQ=255) tgttgtGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATAtttt > 1:2703568/1‑150 (MQ=255) tgttgtGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATAtttt > 1:4099920/1‑150 (MQ=255) ttgtGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCa < 1:4328692/150‑1 (MQ=255) tgtCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGT‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATcc < 2:2890338/150‑1 (MQ=255) gtCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCg > 2:668175/1‑150 (MQ=255) cGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTg < 1:3515699/150‑1 (MQ=255) ggTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGc > 1:4424658/1‑150 (MQ=255) tAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGT‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGt < 1:4282080/150‑1 (MQ=255) aGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTa > 2:3475263/1‑150 (MQ=255) gAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGT‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTaa > 2:2257823/1‑150 (MQ=255) aaaTCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTaaa < 1:835827/150‑1 (MQ=255) aaaTCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTaaa > 2:2905813/1‑150 (MQ=255) aaaTCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTaaa > 1:1268062/1‑150 (MQ=255) aaaTCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTaaa > 1:2250286/1‑150 (MQ=255) aaaTCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTaaa > 1:341354/1‑150 (MQ=255) aTCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAaaca > 1:1969760/1‑150 (MQ=255) aTCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAaaca < 1:3786974/150‑1 (MQ=255) tCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAaacaa < 1:979373/150‑1 (MQ=255) aTACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTAcc > 1:2385326/1‑150 (MQ=255) cTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACcagca > 2:1177435/1‑150 (MQ=255) cTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACcagca < 2:2114295/150‑1 (MQ=255) aaTGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCagcagc > 2:1561076/1‑150 (MQ=255) aaGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCAt > 2:3103042/1‑150 (MQ=255) aaGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCAt > 1:4516619/1‑150 (MQ=255) aaGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCAt > 1:150847/1‑150 (MQ=255) aaGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGAGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCAt > 1:2976157/1‑150 (MQ=255) aGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGT‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATc > 2:2957336/1‑150 (MQ=255) aGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATc < 2:1088868/150‑1 (MQ=255) gATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGa < 1:1227094/150‑1 (MQ=255) gATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGa < 1:1226825/150‑1 (MQ=255) gATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGa < 2:1330409/150‑1 (MQ=255) gATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGa > 1:407855/1‑150 (MQ=255) aaaTTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATcc > 1:3375573/1‑150 (MQ=255) aaaTTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATcc > 2:1631397/1‑150 (MQ=255) ttACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTa < 1:1854410/150‑1 (MQ=255) ttACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTa > 1:4338266/1‑150 (MQ=255) tACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTaa > 1:3603736/1‑150 (MQ=255) tACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTaa > 1:4201627/1‑150 (MQ=255) cGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGa < 2:1981213/150‑1 (MQ=255) cGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGa > 1:4259259/1‑150 (MQ=255) gCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGAt < 2:1345043/150‑1 (MQ=255) aacaaTATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAAt > 2:315984/1‑150 (MQ=255) aacaaTATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAAt > 2:2691240/1‑150 (MQ=255) caaTATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGa < 1:3443631/150‑1 (MQ=255) aaTATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGAc > 1:1598194/1‑150 (MQ=255) tatGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCa < 1:668175/150‑1 (MQ=255) tatGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCa > 2:363292/1‑150 (MQ=255) tatGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCa < 1:2124064/150‑1 (MQ=255) atGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAg > 2:3903765/1‑150 (MQ=255) tgtgTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAgg < 1:3189038/150‑1 (MQ=255) gtgtACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGt < 2:1108757/150‑1 (MQ=255) aCCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATa > 1:144026/1‑150 (MQ=255) aCCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATa < 2:610996/150‑1 (MQ=255) aCCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATa < 2:4476057/150‑1 (MQ=255) cGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAat < 2:3031967/150‑1 (MQ=255) cGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAat < 2:4368512/150‑1 (MQ=255) aTTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTc < 1:2822576/150‑1 (MQ=255) tGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTcgc < 1:3647774/150‑1 (MQ=255) cgcTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTcgcacg < 1:1840375/150‑1 (MQ=255) tAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTCGCACGCag < 2:1388759/150‑1 (MQ=255) gtgtgtGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTCGCACGCAGAGt < 2:4199969/150‑1 (MQ=255) gtgtgtGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTCGCACGCAGAGt < 2:1816162/150‑1 (MQ=255) tgtgtgAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTCGCACGCAGAGtt > 1:4256991/1‑150 (MQ=255) gtgtgAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCTATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTCGCACGCAGAGttt < 2:848699/150‑1 (MQ=255) tgtgAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTCGCACGCAGAGtttt < 1:2085593/150‑1 (MQ=255) gtgAAGT‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTCGCACGCAGAGttttt < 1:3810283/150‑1 (MQ=255) gtgAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTCGCACGCAGAGttttt < 2:3984217/150‑1 (MQ=255) tgAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTCGCACGCAGAGTTTTTa < 2:2385326/150‑1 (MQ=255) aaGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATCTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTCGCACGCAGAGTTTTTATc > 1:2474224/1‑150 (MQ=255) c‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTCGCACGCAGAGTTTTTATCAAc > 1:4536479/1‑150 (MQ=255) | CATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGC‑TTTTTTTCCAAATACCATGCTGCCGATGACCATAAAGTTGCGATATTTTCATCCGTGCAGGTAAACAACGTACCAGCAGCGCCACCATCCACTGATCCGTAAGATTAATGACCAGGTCATAATTATTCGCACGCAGAGTTTTTATCAAC > CP009273/3800963‑3801261 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |