| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,860,159 | C→A | 100% | P33P (CCG→CCT) | ibpB ← | heat shock chaperone |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,860,159 | 0 | C | A | 96.2% | 634.6 / 10.9 | 225 | P33P (CCG→CCT) | ibpB | heat shock chaperone |
| Reads supporting (aligned to +/- strand): ref base C (5/5); new base A (82/122); total (98/127) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.32e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 231 total aligned reads displayed.
TTTTTTCTCTTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGCGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCAAATCCGAAGATTC > CP009273/3860012‑3860308 | ttttttCTCTTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTAcggagg < 1:2580889/150‑1 (MQ=255) tttttCTCTTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCGTTTCTCAATGGTGTAAGGAggg > 2:2507814/1‑150 (MQ=255) ttttCTCTTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGa < 1:3417825/150‑1 (MQ=255) ttttCTCTTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTATCAATGTTGTACGGAGGGa > 2:3990962/1‑150 (MQ=255) ttCTCTTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATTTTGTAAGGAGGGAAg > 1:724454/1‑150 (MQ=255) tctcTTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTTTAAATGTTTTTAGGGGGGAAGc > 1:1230451/1‑150 (MQ=255) ctctTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGct < 2:3136900/150‑1 (MQ=255) tcttctTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGctc > 2:2159756/1‑150 (MQ=255) tcttctTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGctc < 1:4163187/150‑1 (MQ=255) tcttctTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGctc < 1:2842897/150‑1 (MQ=255) cttcttTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGctct < 2:2751782/150‑1 (MQ=255) cttcttTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGctct < 2:2974880/150‑1 (MQ=255) cttTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTGTAAATGTTTTTCGGGGGGGAGCGATGGc > 1:2058986/1‑150 (MQ=255) cttTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAAAGTTGTAAGGTGGGAAGCTCTGGc > 1:3152717/1‑150 (MQ=255) ttttGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTATCAAAGTTGTACGGAGGGAAGCTCTGGca > 2:358977/1‑149 (MQ=255) ttttGGCTGCTCCGGCGTGCCTGTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAACCCTGCCAGCGCAAGGGTCATGCGGTAGTGGTGATCGTCGCTGTTCTCCATGGTGTACGGAGGGCAGCTCTGGca > 2:357632/1‑149 (MQ=255) tGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTc < 2:2332410/150‑1 (MQ=255) ggCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCa < 2:290037/150‑1 (MQ=255) gctgctCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTTCGGAGGGAAGCTCTGGCTTTCaa > 1:4620188/1‑149 (MQ=255) gctgctCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAAAGTTGTACGGAGGGCAGCTCTGGCTTTCAc > 2:2066697/1‑150 (MQ=255) gctgctCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCGTTTGTGAAAGTTGTTAGGAGGGACGCCCTGGCGTTCAc > 1:3603372/1‑150 (MQ=255) tgctCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTTTACGGAGGGAAGCTCTTGCTTTCACCg > 2:3952171/1‑150 (MQ=255) tgctCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTAAGGAGGGAAGCTCTGGCTTTCACCg > 2:1561064/1‑150 (MQ=255) tgctCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAAGGTTGTACGGAGGGAAGCTCTGGCTTTCACCg > 2:555287/1‑150 (MQ=255) tgctCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTATCAATGTTTTTCGGAGGGGAGCGCTGGCTTTCACCg > 1:348466/1‑150 (MQ=255) cGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTATCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑Gtt > 2:1086825/1‑150 (MQ=255) cGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTg < 1:2480694/150‑1 (MQ=255) gCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAg < 2:3817467/150‑1 (MQ=255) ttttACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCGTTTATCAATGGTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGc > 2:996568/1‑150 (MQ=255) tACGCTCAGGCGCGTACCGTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑tt < 2:3663688/150‑1 (MQ=255) aCGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTg < 2:26561/150‑1 (MQ=255) cGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTGTGAATGTTGTAAGGCGGGGAGCTCAGGCTTTCACCGGC‑GGTTGTCGGTGCG‑GTgg > 1:4072700/1‑150 (MQ=255) gCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGc < 2:622538/150‑1 (MQ=255) tCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCa < 1:1679851/150‑1 (MQ=255) tCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTAAATGTTGTACGGAGGGAAGCTCTGGGTTTAACCGGC‑GTTTTGCAGTGCG‑TTGGccc > 2:1457931/1‑149 (MQ=255) cAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAg < 1:1491989/150‑1 (MQ=255) cAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTATCAATTTTGTAAGGAGGGAAGCTCGGGCGTTCACCGGC‑GGGTTGCAGTGCG‑GTGGGCac > 1:2649106/1‑149 (MQ=255) gcgcGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGttt < 1:2159756/150‑1 (MQ=255) gcgcGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGttt < 2:3436388/150‑1 (MQ=255) gcgTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGt < 2:4721390/150‑1 (MQ=255) tACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCaa < 1:2528841/150‑1 (MQ=255) aCCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTATAAATTTTTTAAGGAGGGTAGCTCTTGCTTTAAACCGC‑GGTTTTGAGTGCG‑TTTGCCACTTTTTGaaa > 1:2961600/1‑150 (MQ=255) ccTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTATAAAAGTTGTAAGGAGGGGACCGCTGGCTTTAACCCGCGGTTTTGC‑GTTCG‑GTGGGCAGTTTTTGaaaa > 1:3784575/1‑150 (MQ=255) tCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTTTAAGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGGG‑TTGGCCCGTTTGTCAAAACCg > 2:2717479/1‑150 (MQ=255) tCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTAACCCGC‑GTTTTTCAGTGCG‑TTTGCCAGTTTTTAAAAAccc > 1:1939813/1‑149 (MQ=255) aGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑c < 2:3628471/150‑1 (MQ=255) ttGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCa < 1:1197445/150‑1 (MQ=255) ttGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTATCAAATTTGTAAGGAGGGTAGCTCTGGGTTTAAACGGC‑GTTTTTGCGTGCGTTTGGCCGGTTTTGAAAAAccataac > 1:908815/1‑145 (MQ=255) tGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCAt < 1:4636917/150‑1 (MQ=255) tGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTATCAATGGTGTACGGAGGGAAGCTCTGGCGTTCACCGGC‑GGTTTGCAGTGCG‑GTGGCCAGTTTGTCAAAACCGAtacct > 2:1446174/1‑146 (MQ=255) gAATCTCTAAATCGTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCAtt < 2:4637322/150‑1 (MQ=255) aTCTCTAAATCTTCCTGTCGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGa < 1:2428840/150‑1 (MQ=255) tctcTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGAc < 1:3833886/150‑1 (MQ=255) ctctAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACg < 1:3520975/150‑1 (MQ=255) tctAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTTCGGAGGGAAGCTCTGGCGTTCACCGGC‑GTTTTGCAGTGCG‑TTTGCCCGGTTGTCAAAACCGAT‑CCATTGACGc > 2:1919694/1‑150 (MQ=255) tAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTGTCAATGTTGTACGGCGGGAAGCTCGGGCTTTCACCGGC‑GGTTTGCAGTGCG‑GTGGCCCGGGTGTGCAAACCCCT‑CCAGTGACGcct > 2:2879337/1‑148 (MQ=255) aTCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTATCAATGTTGTTCGGAGGGAAGCTCTGGCGTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTTTCAAAACCGAT‑CCATTGACGCATCAg > 2:351121/1‑150 (MQ=255) cTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTg < 2:66291/150‑1 (MQ=255) cTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCGTTTATCAATTTTTTTCGGAGGGGAGCTCTGGCGTTCACCGGC‑GGTTTTCTGTGCG‑TTGGGCAGGTTGTCAAAAACGCT‑CCCGTGTCGCATCAGTg > 2:24815/1‑150 (MQ=255) ttCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGTAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCATATCCGAT‑CCATTGACGCATCAGTgg < 2:336833/150‑1 (MQ=255) ttCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTgg < 2:264116/150‑1 (MQ=255) tGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGAt < 1:3393826/150‑1 (MQ=255) gACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATa < 1:1703970/150‑1 (MQ=255) gACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GGGTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATa > 2:3456593/1‑150 (MQ=255) ggAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAAt < 1:3464898/150‑1 (MQ=255) aaaCCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCg < 2:4324369/150‑1 (MQ=255) aaaCCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCg < 2:1382327/150‑1 (MQ=255) aaaCCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCg < 1:805792/150‑1 (MQ=255) aaaCCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTATCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GGTTTGCCGTGCG‑TTGGCCAGTTTGTCAAAAACGAT‑ACATTGACGCATCAGTGGGGATAAAtac > 2:3912532/1‑148 (MQ=255) aaCCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCGTTCACCCGC‑GGTTTTCAGTTCG‑TTTGGCCGTTTTTAAAAAACGAT‑CCAATGACGCCACAGTGGGGATAAATCGa > 1:1909626/1‑150 (MQ=255) ccTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAg < 2:1208619/150‑1 (MQ=255) tGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAGtt < 2:3024031/150‑1 (MQ=255) gCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTGTAAATTTTTTTAGGTGGGAAGCTCTGGCGTTCAACGGC‑GGTTTTGAGTTCG‑TTTGCCAAGTTTTAAAAACCCAT‑ACCTTTTCGCATCAGGGGGGAGAAATAGAAGTTa > 2:1605482/1‑150 (MQ=255) gCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAGTTa < 1:4431750/150‑1 (MQ=255) gCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTATCAAAGTTTTTCGGGGGGTAGCTATGGCGTTGAACCGC‑GGGTTTGAGGGCG‑GTGGCCAGTTTTTCAAAAACGAT‑CCAAAGTCGCCGCAGTGGGGGTAAAAAGAAGTTa > 2:925320/1‑150 (MQ=255) ccAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAGTTAc < 1:2693385/150‑1 (MQ=255) ccAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAGTTAc < 1:2768214/150‑1 (MQ=255) aGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTATCAATGTTGTACGGAGGGAAGCTCTGGCTTTAACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTTTCAAAAACGAT‑ACATTTACGCATCAGTGGGGATAAATCGAAGTTACGc > 2:2247699/1‑150 (MQ=255) aGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCGTTTCTCAATGTTGTTCGGAGGGTAGCTCTGGCTTTCACCGGG‑GGTTTGCAGTGCG‑TTGGGCAGTTTGTGAAAAACGATACCATT‑ACGCATGAGTGGGGGTAAATAGGAGGTACGc > 2:1006070/1‑150 (MQ=255) aGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCGTTTATTAAAGTTTTACGGAGGGTAGCTCTGGCGTTAACACGC‑GGTTTTCAGTGCG‑TTTGGCAGGTTTTGAAAAAACAA‑ACAGTTAAGCAACACTGGGGGTAAAAAGAAGTTAccc > 2:430930/1‑148 (MQ=255) cgcAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCAt < 2:2301165/150‑1 (MQ=255) cAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAg < 1:332607/150‑1 (MQ=255) aGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGCGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTc < 1:3719264/150‑1 (MQ=255) aaTGCGGTAGTGGTTATCGTCGCTTTTCTCCATGGTGTACGGAGGGGAGCTCGTGCGTTCAACGGC‑GGTTTGCAGTGCG‑TTTGCCCGTTTTTAAAAAACGAT‑CCCATGACGCATCATGGGGGATAAATAGCAGTTAAGCAAAGTCAATtc > 2:163369/1‑150 (MQ=255) aaTGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCACTTTGTCAAAACCGAT‑CCATTTACCCCACCGGGGGGATAAAACGAAGTTACGCAAAGTCAttta > 2:4311836/1‑149 (MQ=255) ggTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCtt < 1:3933596/150‑1 (MQ=255) tATCGTCGCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGc < 1:2331872/150‑1 (MQ=255) tggtcgCTTTTCTCTATGTTGTACGGAGGGAAGCTCTGGCTTTCTCCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAGTTTCGCATAGTCATTTCTCCTTCTAAGAAGCGa < 1:1039137/148‑1 (MQ=255) tcgtcgCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGa < 2:3971199/150‑1 (MQ=255) tcgtcgCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGa < 2:1931338/150‑1 (MQ=255) cgtcgCTTTTCTCAATGTTGTACGGCGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGag < 1:1750159/150‑1 (MQ=255) tcgCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGagta < 2:4028397/150‑1 (MQ=255) cgCTTTTCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGagtaa < 2:3553486/150‑1 (MQ=255) tttCTCAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTAc > 2:699383/1‑150 (MQ=255) ctcAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTg > 2:3405793/1‑150 (MQ=255) tcAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGc > 2:4566290/1‑150 (MQ=255) cAATGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCa > 2:4241119/1‑150 (MQ=255) aaTGTTGTACGGAGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCaa > 2:1865947/1‑150 (MQ=255) cggaggGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCAAATCCGAAGa > 1:555412/1‑150 (MQ=255) cggGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCAAATCCGAAGATTc < 1:2257219/150‑1 (MQ=255) | TTTTTTCTCTTCTTTTGGCTGCTCCGGCGTGCCTTTTACGCTCAGGCGCGTACCTTCCAGTTGAATCTCTAAATCTTCCTGACGGAAACCTGCCAGCGCAAGGGTAATGCGGTAGTGGTTATCGTCGCTTTTCTCAATGTTGTACGGCGGGAAGCTCTGGCTTTCACCGGC‑GTTTTGCAGTGCG‑TTGGCCAGTTTGTCAAAACCGAT‑CCATTGACGCATCAGTGGGGATAAATCGAAGTTACGCATAGTCATTTCTCCTTCTAAGAAGCGAGTAAGTACCTGCAAATCCGAAGATTC > CP009273/3860012‑3860308 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |