| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,933,988 | C→A | 6.8% | intergenic (‑16/+7) | hsrA ← / ← yieP | putative multidrug or homocysteine efflux system/putative transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,933,988 | 0 | C | A | 6.8% | 1231.6 / 46.7 | 325 | intergenic (‑16/+7) | hsrA/yieP | putative multidrug or homocysteine efflux system/putative transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (159/144); new base A (15/7); total (174/151) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.56e-01 | |||||||||||
Only 100 of 329 total aligned reads displayed.
GGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGACGTGAAGTAAGTGTGAT > CP009273/3933839‑3934137 | agaACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCgg > 2:121527/1‑150 (MQ=255) gaACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCggg < 1:3954532/150‑1 (MQ=255) gaACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCggg > 2:3895928/1‑150 (MQ=255) cGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTa > 1:1105478/1‑150 (MQ=255) aTTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATc > 2:2007075/1‑150 (MQ=255) ttAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCa < 1:4168054/150‑1 (MQ=255) ggCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTa < 1:838727/150‑1 (MQ=255) tATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCa < 1:2369781/150‑1 (MQ=255) tATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCa < 2:2629194/150‑1 (MQ=255) aTGATCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAg < 1:3660660/150‑1 (MQ=255) tGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAgg > 2:1571082/1‑150 (MQ=255) gAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGt < 2:3203091/150‑1 (MQ=255) gCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGa < 1:2833623/150‑1 (MQ=255) gCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGa < 1:2092857/150‑1 (MQ=255) gCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGa < 1:4509229/150‑1 (MQ=255) gATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGc > 1:4720081/1‑150 (MQ=255) aTTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCg < 1:2443938/150‑1 (MQ=255) gTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTagcagc < 2:3635176/150‑1 (MQ=255) aaGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAgcgc > 2:107181/1‑150 (MQ=255) aaGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAgcgc > 2:2103733/1‑150 (MQ=255) ggCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCt < 1:884365/150‑1 (MQ=255) cGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGa > 2:438678/1‑150 (MQ=255) cGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATAGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGa < 2:1476934/150‑1 (MQ=255) ggTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGAc > 2:1764055/1‑150 (MQ=255) ggTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGAc > 1:552763/1‑150 (MQ=255) tAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCt > 1:4175628/1‑150 (MQ=255) tAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCt > 2:4610072/1‑150 (MQ=255) tAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATAGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCt < 2:3641315/150‑1 (MQ=255) aGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCttt < 2:3084157/150‑1 (MQ=255) aGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCttt < 1:1021302/150‑1 (MQ=255) tAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAAt < 1:70874/150‑1 (MQ=255) cATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCcgcg > 1:1926000/1‑150 (MQ=255) aGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGcc < 2:1981967/150‑1 (MQ=255) gTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCa > 2:4179156/1‑150 (MQ=255) gTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCa > 1:2379644/1‑150 (MQ=255) ccTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCg < 2:1005672/150‑1 (MQ=255) cTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACCAGCTTTAAATGCCGCGTCGCCATCGc > 2:257769/1‑150 (MQ=255) cATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCttt < 2:2878625/150‑1 (MQ=255) cATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCttt < 2:1920693/150‑1 (MQ=255) tGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTgg > 2:4236308/1‑150 (MQ=255) aagaagGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGAt < 2:2664423/150‑1 (MQ=255) aagaagGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGAt > 1:3295252/1‑150 (MQ=255) aagaagGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGAt < 1:1651122/150‑1 (MQ=255) gaagGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATaa > 1:2705919/1‑150 (MQ=255) gaagGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATaa > 1:1665417/1‑150 (MQ=255) gaagGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATaa < 2:4215086/150‑1 (MQ=255) agGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATc > 2:692884/1‑150 (MQ=255) agGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATc < 2:760975/150‑1 (MQ=255) ggCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCg > 1:4566185/1‑150 (MQ=255) cATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCAt < 2:2579721/150‑1 (MQ=255) cATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCAt > 1:357547/1‑150 (MQ=255) aTCGCCGCGATCCACGGCACACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATc < 2:4684994/150‑1 (MQ=255) aTCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATc < 1:438678/150‑1 (MQ=255) gcgATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATAGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAAt < 2:3470900/150‑1 (MQ=255) cgATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATc < 1:3385238/150‑1 (MQ=255) gATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCg > 1:3408864/1‑150 (MQ=255) aTCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGc > 1:1972965/1‑150 (MQ=255) aCGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGa < 2:488307/150‑1 (MQ=255) cGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGAt > 1:2893334/1‑150 (MQ=255) cGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGAt > 1:2277901/1‑150 (MQ=255) cAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCa < 1:4041009/150‑1 (MQ=255) aaaCCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAg > 1:507469/1‑150 (MQ=255) aaCCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGa > 1:267723/1‑150 (MQ=255) cccGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATc > 2:1897740/1‑150 (MQ=255) ccGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATcc > 2:3250187/1‑150 (MQ=255) cGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCa < 1:1326370/150‑1 (MQ=255) cGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCa < 1:249488/150‑1 (MQ=255) gCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAg < 1:4306797/150‑1 (MQ=255) cATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCt < 1:3869704/150‑1 (MQ=255) aTACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCtt > 2:2280631/1‑150 (MQ=255) aTACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCtt < 1:2613441/150‑1 (MQ=255) tACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCttt > 2:2429463/1‑150 (MQ=255) aCTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATAGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTa > 2:2905854/1‑150 (MQ=255) cgcTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCAc < 1:4053871/150‑1 (MQ=255) cgcTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCAc > 1:3259760/1‑150 (MQ=255) gcTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACt > 1:3148647/1‑150 (MQ=255) ttcttTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACtgt < 1:609859/150‑1 (MQ=255) ttcttTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACtgt < 1:1506917/150‑1 (MQ=255) tttttATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTc > 1:1621654/1‑150 (MQ=255) tttttATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTc > 2:4236573/1‑150 (MQ=255) tttttATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTGTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTc > 2:4649514/1‑150 (MQ=255) tttATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATTAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGc > 2:4265452/1‑150 (MQ=255) tCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGt > 2:3149467/1‑150 (MQ=255) tCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGt > 2:3757882/1‑150 (MQ=255) aTTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGa < 2:2775593/150‑1 (MQ=255) aTTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGa < 1:2208221/150‑1 (MQ=255) ttCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGAc < 2:2343540/150‑1 (MQ=255) tCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGACg < 1:3331560/150‑1 (MQ=255) aaTGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGACGTg < 2:62420/150‑1 (MQ=255) aaTGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGACGTg > 2:275209/1‑150 (MQ=255) tGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGACGTGaa < 1:1055403/150‑1 (MQ=255) tGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGACGTGaa < 2:1413187/150‑1 (MQ=255) cTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGACGTGaagtaa < 2:2496315/150‑1 (MQ=255) cTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGACGTGaagtaa > 2:700715/1‑150 (MQ=255) tATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGACGTGAAGTAAgtgt > 1:1372547/1‑150 (MQ=255) tATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGACGTGAAGTAAgtgt > 2:4017179/1‑150 (MQ=255) tATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGACGTGAAGTAAgtgt > 1:2546221/1‑150 (MQ=255) tCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGACGTGAAGTAAGTGTGa < 1:308659/150‑1 (MQ=255) cGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGACGTGAAGTAAGTGTGAt < 2:2947224/150‑1 (MQ=255) cGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGACGTGAAGTAAGTGTGAt > 1:1207297/1‑150 (MQ=255) | GGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAATCGCCTGATGCAGATCCAGCTTTATCACTGTGTCGCTGGTAATTGACGTGAAGTAAGTGTGAT > CP009273/3933839‑3934137 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |