| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 360,114 | A→T | 6.3% | intergenic (‑48/+547) | lacZ ← / ← lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 360,114 | 0 | A | T | 6.3% | 1317.0 / 21.4 | 429 | intergenic (‑48/+547) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base A (181/210); new base T (6/30); total (188/241) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.53e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 432 total aligned reads displayed.
AGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGA > CP009273/359965‑360255 | ggCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAg > 1:471797/1‑150 (MQ=255) ggCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAg > 1:1682842/1‑150 (MQ=255) ggCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAg < 2:3029890/150‑1 (MQ=255) gccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAg > 2:3753874‑M1/139‑150 (MQ=255) gccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAg > 1:4091507‑M1/139‑150 (MQ=255) gccgttgcttcgcaacgtacaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAg > 2:2049855‑M1/139‑150 (MQ=255) cAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGtt < 2:2798359/150‑1 (MQ=255) gttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGttt > 1:516978‑M1/136‑150 (MQ=255) gttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGttt > 2:3337225‑M1/136‑150 (MQ=255) aGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGttt < 1:2062150/150‑1 (MQ=255) ttCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTAt < 2:1356436/150‑1 (MQ=255) tgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTAt > 1:1273353‑M1/134‑150 (MQ=255) tgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTAt > 2:2631000‑M1/134‑150 (MQ=255) gcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaccaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATg > 2:2261695‑M1/133‑150 (MQ=255) cttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATgg > 1:114292‑M1/132‑150 (MQ=255) cttcgcaacgtacaaatccgctcccggcggatttggccaacccaggagagcgttcaccgaccaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATgg > 1:2789455‑M1/132‑150 (MQ=255) ttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggc > 2:1708159‑M1/131‑150 (MQ=255) aacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGGTTATggcgggcg < 2:4755440‑M1/25‑1 (MQ=255) aCTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:2984566/1‑150 (MQ=255) aCTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:3635095/1‑150 (MQ=255) cTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGt > 1:2653829/1‑150 (MQ=255) acgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGt > 1:3267226‑M1/125‑150 (MQ=255) cgttcaaatccgctcccggcggatttgtcctcctcaggagagcgttcaccgacaaacaacagatacaacgacaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTc > 1:2718382‑M1/124‑150 (MQ=255) cgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTc > 1:3900612‑M1/124‑150 (MQ=255) gttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTcc > 1:3822842‑M1/123‑150 (MQ=255) ggtcccatccgctcccggcggaattgtcctaccccccagcgcgtacaccgaccaaccccagataaaacgaaaggcccagtcgttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTcc > 1:2378858‑M1/123‑150 (MQ=255) caaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagatacaccgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGc > 2:2662531‑M1/120‑150 (MQ=255) aaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTc < 1:2667523‑M1/27‑1 (MQ=255) cTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCg > 2:2914873/1‑150 (MQ=255) cTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCg < 2:593910/150‑1 (MQ=255) atccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCg < 1:3065264‑M1/34‑1 (MQ=255) atccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCg > 1:3466932‑M1/117‑150 (MQ=255) atccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgtgttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCGGCCCg < 1:3774938‑M1/34‑1 (MQ=255) ccgctcccggctgatttgtcctactcaggagagcgttcaccgacaaaccacagatcacccgtcaggcccagtctttcgactgagcctttcgatttaattgatgcctggggatttAATTCCTGGCAGTTTATGGCGGGGGTCCTGCCCGcc > 2:3103825‑M1/115‑150 (MQ=255) cgctcccggcggatttgtcctactccggagagcgttcaccgacaaacacccgataaaacgaacggcccagactttcgactgagccgtacgttttatttgctgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCa > 2:1093399‑M1/114‑150 (MQ=255) cccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgtgttatttgatgcctggggaattAGTACATGGCTCTTTATGGCGGGCGTGCCGCCCGCCACCCt < 2:4121414‑M1/41‑1 (MQ=255) aGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCt < 1:1325273/150‑1 (MQ=255) aGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCt < 1:792238/150‑1 (MQ=255) gCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTc < 1:647547/150‑1 (MQ=255) gCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTc < 2:1397255/150‑1 (MQ=255) cggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCa < 2:4482705‑M1/11‑1 (MQ=255) cATCCCGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGTTGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCTGTTTTTGGCGGGCGTCCTGCCCGCCACCCTCCggg < 2:3412785/150‑1 (MQ=255) tCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGcc > 1:4482070/1‑150 (MQ=255) tCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGcc > 1:3955098/1‑150 (MQ=255) atttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcgggcg > 2:398632‑M1/102‑126 (MQ=255) agcggCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCTGTGCTGGTGCTCCTTTTATACGCTGTAAAACATGAGAATTCCGACCCCAATTTCGTGGCTTTTTTGGGGGGGCGTCCTGCCCGCCACCCTCCGGGCCGtt < 1:4632564/147‑1 (MQ=255) agagGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGtt < 2:2945024/150‑1 (MQ=255) agagGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGtt < 2:2333171/150‑1 (MQ=255) gtggCACTTCACCGCTTGCCTGCGGCTTACCATCCAGCGCAACCATCCAGTGCTGGAGCTCCGATGATAAGTTTAAAAACTTGAGAATTCCGAGCCCAAATTCCTGGATTTTTTTGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTg < 1:2246617/148‑1 (MQ=37) ggCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCt > 2:2550886/1‑150 (MQ=255) ggCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCt < 2:1836299/150‑1 (MQ=255) aCTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCg > 1:2576323/1‑150 (MQ=255) cGCTTGCCAGCGGCTTACCATCCAGCGCCACCAGCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGtt < 2:4655708/150‑1 (MQ=255) cGCTTGCCAGCGGCTTACCAGCCAGCGCCACAATCCCGTGCAGGAGCTCCGATGATAAGCTGACAACAATGAGAATTCCTCTCCCAATTTCGTGGCTGTTTTGGGGGGGCGTCCGGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGtt < 1:2519695/150‑1 (MQ=25) cTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCa < 2:490589/150‑1 (MQ=255) ttGCCAGCGGCTTACCATCCACCGCCACCATCCTGTGCAGTAGCTCCGATGATAAGCTGTCAAACATGAGAAGTCCGATCCCCAAGTCCTGGCAGTTTAGGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCaa < 2:709846/150‑1 (MQ=37) gttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATc > 2:2140364‑M1/81‑150 (MQ=255) cAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATcc < 2:3809174/150‑1 (MQ=255) cAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCG‑CTACGATGAAAtac > 1:1522143/1‑148 (MQ=255) aGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTAG‑CCACGTTCAAATCCg > 1:1858994/1‑150 (MQ=255) caccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCa > 1:4303573‑M1/78‑114 (MQ=255) cacccacaaacacccgataaaccgaaaggcccagtatttcgactgagcctttctttttatttgttgcctggggaattAATTCGTGGCTGTTTAGGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGc > 2:44205‑M1/78‑150 (MQ=255) ttACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCcg > 2:3508726/1‑150 (MQ=255) caaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgccgggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCCCCCTCCGGGCCGTTGCGTAG‑CAACCGGCAAATCAGCTCCcgg < 1:2145825‑M1/79‑1 (MQ=255) aacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCccggcc < 2:67303‑M1/81‑2 (MQ=255) caacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGGTGCTTCG‑CAACGGTCAAATACGCTCccggcggc < 2:3670389‑M1/83‑2 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGAtt < 1:3118689/150‑1 (MQ=255) gcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:762337/150‑1 (MQ=255) aaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCt < 2:1520344‑M1/91‑1 (MQ=255) accaGCCAGTGCTGGAGCTCCTTTTATACGCTGTAAAACATGATAATTCCGATCCCCATTGCGGGGCTGTTTTTGGGGGGCGTCCGGCCCCCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTAc < 1:1309241/150‑1 (MQ=17) gaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTa > 1:424097‑M1/55‑70 (MQ=255) aaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcgggcg < 1:442437‑M1/25‑1 (MQ=255) aGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGgag < 2:4029978/150‑1 (MQ=255) gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTAGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGgaga < 2:1265776/150‑1 (MQ=255) gCAGGAGCTCCTATGATAAGCTGTCAAACCTGAGAATTCCGATCCCCACGTCCTGGCAGTTTAGGGCGGGCGGCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGc < 2:315936/150‑1 (MQ=18) gCAGGAGCCCCTTTGATAAGCTTACAAACTTGAGATTCCCGAGCCCAATTCCCTGGCTTTTTCGGGGGGGCGCCCTCCCCGCCACCCTCCGGGCCGGTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGc < 1:2822542/150‑1 (MQ=9) aGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCCCTCCCCGGGGATTTGTCCTACTCAGGAGAGCGt > 1:1098377/1‑150 (MQ=255) tctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGGTCCCGGCGGGTTTGTCCTACTCAGGTGagcggtc < 2:2432146‑M1/107‑4 (MQ=255) gAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTc < 2:792261/150‑1 (MQ=255) agttcgtctgagcctatgtttttattggttgcctgggtaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCa > 2:4224448‑M1/43‑150 (MQ=255) cTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCAcc < 2:1653564/150‑1 (MQ=255) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCg < 2:138802/150‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattCATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGac > 2:2674886‑M1/38‑150 (MQ=255) tgagcctttcgttttatttgatgcctggggaattAATTCCTGGAAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTAGCTTCC‑CAACCTTCAAATCCGCACCCGGCCGATTTGTCCTACACAGGAGTGCGTTCACAGacaaa < 2:2514664‑M1/116‑1 (MQ=255) tAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaaacaa > 2:2718382/1‑150 (MQ=255) tAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCACGAGAGCGTTCACCGacaaacaa > 2:3902040/1‑150 (MQ=255) cctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATACGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAaacaac < 2:1163375‑M1/120‑1 (MQ=255) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAaacaac > 2:2268025/1‑150 (MQ=255) gCTGTCAACCATGCGAATTCCGATCCCCAATTCCTGGCTGTTTTTGGCGGGCGGCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAg < 1:1026517/150‑1 (MQ=17) cgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcgggcg < 2:536948‑M1/25‑1 (MQ=255) tCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaa < 2:1941285/150‑1 (MQ=255) tCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTAGGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaa < 2:886846/150‑1 (MQ=255) ttttttgcgtgggtaattAATGCTGGGCTGTTTTGGGGGGGCGCCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGaa > 1:94623‑M1/19‑150 (MQ=255) tttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCG‑CAACGTTCAAAACCCCTCCCGGCCGATTTGTCCAACACAGGAGAGCGTTCACCGACAAAAAACacataaaaacaa < 2:3628019‑M1/132‑5 (MQ=255) ctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTAG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTAACCGACAAAAAACAGATAAAACGAAAGGCCCAg < 2:1876962‑M1/140‑1 (MQ=255) cGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGTTCG‑CAACGTTCAAATACGCTCCCGGCGGCTTTGTCCTACTCAGGGGAGGGTGGACCGGCAAACAACCGATTAAACGAAAGGCCCCGtg > 2:3647346/1‑149 (MQ=14) gATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCt < 2:4304774/150‑1 (MQ=38) gATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGGTGCTTCGCCAACG‑TCAAAAACCCGACCCGCGGAATTTTGCAAAAAAGGTGAGCGTTCACCCACAAAAAACACAAAAAAAGAAAAGCCCaaaaa > 1:3010717/1‑146 (MQ=2) aTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTGG‑CCACGGTCAAATCCGCTCCCGGCGGATTTGTGCTACTCAGGAGAGCGTTGACCGACAAACAACAGATAAAACGAAAGGCCCCGTCTTTAGACTg > 2:433339/1‑150 (MQ=11) ttCCTGGCTGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGa < 1:1928530/150‑1 (MQ=14) | AGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGA > CP009273/359965‑360255 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |