Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,197,734 C→T 14.4% R219K (AGA→AAA)  cohE ← e14 prophage; repressor protein phage e14

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,197,7340CT14.4% 533.4 / 67.9 188R219K (AGA→AAA) cohEe14 prophage; repressor protein phage e14
Reads supporting (aligned to +/- strand):  ref base C (67/94);  new base T (11/16);  total (78/110)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 200 total aligned reads displayed.

CGTACGTACCGGGCGGGCTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCTGTGTCCCATCTTCTATCAACCTTTTGAAGGTGGTTTCACCTGTA  >  CP009273/1197587‑1197883
                                                                                                                                                   |                                                                                                                                                     
cgtacgtaCCGGGCGGGCTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTAtctt                                                                                                                                                     <  1:1438460/150‑1 (MQ=255)
  tacgtacCGGGCGGGCTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTTTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTAtcttct                                                                                                                                                   <  2:1830058/150‑1 (MQ=255)
   acgtacCGGGCGGGCTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATcttctt                                                                                                                                                  <  2:1457423/150‑1 (MQ=255)
    cgtacCGGGCGGGCTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTg                                                                                                                                                 <  2:3309246/150‑1 (MQ=255)
     gtacCGGGCGGGCTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATTTTCTTgg                                                                                                                                                <  2:2670665/150‑1 (MQ=255)
     gtacCGGGCGGGCGACTGCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCACAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATTTTCTTgg                                                                                                                                                <  2:2670575/150‑1 (MQ=255)
        ccGGGCGGGCTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATTTTCTTGGttt                                                                                                                                             <  1:2804092/150‑1 (MQ=255)
        ccGGGCGGGCTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGttt                                                                                                                                             >  1:3528524/1‑150 (MQ=255)
         cgggcgggCAACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTAGGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGAGTAGGCTTTGATTTTGTATTTTCTTGGtttt                                                                                                                                            <  2:4346246/150‑1 (MQ=255)
            gcgggcTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCt                                                                                                                                         <  1:4635467/150‑1 (MQ=255)
            gcgggcTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCt                                                                                                                                         <  2:4490856/150‑1 (MQ=255)
               ggcTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATTTTCTTGGTTTTCCTgag                                                                                                                                      >  2:3145855/1‑150 (MQ=255)
               ggcTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTgag                                                                                                                                      >  2:1167645/1‑150 (MQ=255)
               ggcTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTgag                                                                                                                                      <  1:3871504/150‑1 (MQ=255)
               ggcTACGGCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTCGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACAGTGATTCGGCTTTGATTTTGTATCTTCTTGGTTTTCCTgag                                                                                                                                      <  2:239688/150‑1 (MQ=255)
                gcTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTgaga                                                                                                                                     <  2:4781262/150‑1 (MQ=255)
                 cTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCACTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGaa                                                                                                                                    <  2:1295382/150‑1 (MQ=255)
                  tACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGaaa                                                                                                                                   >  2:2264266/1‑150 (MQ=255)
                    cTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAAt                                                                                                                                 <  2:1920462/150‑1 (MQ=255)
                    cTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAAt                                                                                                                                 <  1:103181/150‑1 (MQ=255)
                    cTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAAt                                                                                                                                 <  2:4785931/150‑1 (MQ=255)
                      tCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATca                                                                                                                               <  1:4495542/150‑1 (MQ=255)
                      tCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATca                                                                                                                               <  1:4495066/150‑1 (MQ=255)
                        gTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATTTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGTTTTTGTATCTTCTTGGTTTTCCTGAGAAAATcaca                                                                                                                             <  2:3113858/150‑1 (MQ=255)
                        gTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATTTTCTTGGTTTTCCTGAGAAAATcaca                                                                                                                             >  1:2056753/1‑150 (MQ=255)
                         tGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAg                                                                                                                            <  2:1122756/150‑1 (MQ=255)
                           ggCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTa                                                                                                                          <  1:192669/150‑1 (MQ=255)
                               tCCTGCCTGTTTGTTGTTTCTCTTTGGTTCATGATCTTTCTCATTTGTTCATTGTCATGTATTAAAATACCTGCCGACGCTGGTTCATTAACATTGATTTGGGTTTGATTTTGTATCTTCTTTTTTTTCCTGATAAAATCACAGTACCaa                                                                                                                      <  2:4596719/150‑1 (MQ=255)
                               tCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCaa                                                                                                                      <  2:18769/150‑1 (MQ=255)
                                  tgcctgTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATta                                                                                                                   <  1:3008005/150‑1 (MQ=255)
                                   gcctgTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATtat                                                                                                                  <  2:2400051/150‑1 (MQ=255)
                                        tttgttGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATTTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGc                                                                                                             <  2:3386051/150‑1 (MQ=255)
                                        tttgttGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGc                                                                                                             >  2:445270/1‑150 (MQ=255)
                                         ttgttgTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCa                                                                                                            >  1:3740733/1‑150 (MQ=255)
                                         ttgttgTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCa                                                                                                            >  1:1510557/1‑150 (MQ=255)
                                              gttTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATTTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTAc                                                                                                       <  2:3759657/150‑1 (MQ=255)
                                               tttCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATTTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTAcc                                                                                                      <  2:644080/150‑1 (MQ=255)
                                                ttCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCg                                                                                                     >  2:1415895/1‑150 (MQ=255)
                                                ttCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCg                                                                                                     >  2:3875376/1‑150 (MQ=255)
                                                  ctctTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGtt                                                                                                   >  1:3607693/1‑150 (MQ=255)
                                                  ctctTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGtt                                                                                                   >  1:3121793/1‑150 (MQ=255)
                                                      tGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATc                                                                                               >  1:963524/1‑150 (MQ=255)
                                                        ggTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCtt                                                                                             >  1:2543233/1‑150 (MQ=255)
                                                          tACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTaa                                                                                           <  1:1004621/150‑1 (MQ=255)
                                                             aTTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATTTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGt                                                                                        >  2:1473892/1‑150 (MQ=255)
                                                               tATGTATCTCAAAGGTACATTTTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATTTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTaa                                                                                      <  2:2926138/150‑1 (MQ=255)
                                                               tATGTATCCCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTaa                                                                                      >  1:2704650/1‑150 (MQ=255)
                                                                     tctcAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCa                                                                                <  1:344967/150‑1 (MQ=255)
                                                                     tctcAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCa                                                                                <  1:2776594/150‑1 (MQ=255)
                                                                      ctcAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAg                                                                               <  2:2081655/150‑1 (MQ=255)
                                                                      ctcAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAg                                                                               >  1:1731265/1‑150 (MQ=255)
                                                                       tcAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAgg                                                                              <  2:817428/150‑1 (MQ=255)
                                                                       tcAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAgg                                                                              >  1:2920532/1‑150 (MQ=255)
                                                                         aaaGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGcc                                                                            >  1:2134266/1‑150 (MQ=255)
                                                                          aaGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCa                                                                           >  2:4338411/1‑150 (MQ=255)
                                                                          aaGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCa                                                                           >  2:1835628/1‑150 (MQ=255)
                                                                              tACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGttt                                                                       <  2:4811995/150‑1 (MQ=255)
                                                                              tACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGttt                                                                       <  2:4497378/150‑1 (MQ=255)
                                                                                cATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTgg                                                                     >  1:3160566/1‑150 (MQ=255)
                                                                                    gTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATTTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGttt                                                                 <  1:3108496/150‑1 (MQ=255)
                                                                                    gTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGATTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCTATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGttt                                                                 <  1:706582/150‑1 (MQ=255)
                                                                                     tCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTa                                                                <  2:3635507/150‑1 (MQ=255)
                                                                                     tCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTa                                                                <  2:1294555/150‑1 (MQ=255)
                                                                                      cAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTaa                                                               <  1:1719642/150‑1 (MQ=255)
                                                                                      cAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTaa                                                               >  2:3307967/1‑150 (MQ=255)
                                                                                         gTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGc                                                            >  2:2793739/1‑150 (MQ=255)
                                                                                         gTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGGTTGGGTTTAACGc                                                            >  2:352654/1‑150 (MQ=255)
                                                                                          tataAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCt                                                           <  1:2662497/150‑1 (MQ=255)
                                                                                           ataAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCtt                                                          <  1:1176137/150‑1 (MQ=255)
                                                                                            taAAAAAACCTGCCGAAGCATGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCttt                                                         <  2:4639654/150‑1 (MQ=255)
                                                                                              aaaaaaCCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTga                                                       >  2:1382268/1‑150 (MQ=255)
                                                                                              aaaaaaCCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTga                                                       >  2:1383048/1‑150 (MQ=255)
                                                                                                aaaaCCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATTTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTgaga                                                     >  2:271687/1‑150 (MQ=255)
                                                                                                 aaaCCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGAt                                                    <  2:4725351/150‑1 (MQ=255)
                                                                                                     cTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATTTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACg                                                <  2:4155881/150‑1 (MQ=255)
                                                                                                        ccGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCtg                                             <  1:4868747/150‑1 (MQ=255)
                                                                                                        ccGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCtg                                             <  1:4867003/150‑1 (MQ=255)
                                                                                                         cGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCtgt                                            <  1:4470584/150‑1 (MQ=255)
                                                                                                            aGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCTGTGTc                                         <  1:2271099/150‑1 (MQ=255)
                                                                                                               aGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCTGTGTCCCa                                      <  1:4118492/150‑1 (MQ=255)
                                                                                                               aGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCTGTGTCCCa                                      >  2:3323806/1‑150 (MQ=255)
                                                                                                                       aaaCATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCTGTGTCCCATCTTCTAt                              <  2:866247/150‑1 (MQ=255)
                                                                                                                            ttGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCTGTGTCCCATCTTCTATCAAcc                         >  2:2878963/1‑150 (MQ=255)
                                                                                                                              gATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCTGTGTCCCATCTTCTATCAACCtt                       >  1:4409556/1‑150 (MQ=255)
                                                                                                                                ttAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCTGTGTCCCATCTTCTATCAACCtttt                     >  2:3049390/1‑150 (MQ=255)
                                                                                                                                ttAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCTGTGTCCCATCTTCTATCAACCtttt                     <  1:1536718/150‑1 (MQ=255)
                                                                                                                                ttAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCTGTGTCCCATCTTCTATCAACCtttt                     <  1:2364636/150‑1 (MQ=255)
                                                                                                                                   ggCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCTGTGTCCCATCTTCTATCAACCTTTTGaa                  >  2:1578287/1‑150 (MQ=255)
                                                                                                                                   ggCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCTGTGTCCCATCTTCTATCAACCTTTTGaa                  >  2:2828890/1‑150 (MQ=255)
                                                                                                                                      tttGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCTGTGTCCCATCTTCTATCAACCTTTTGAAggt               >  1:4659551/1‑150 (MQ=255)
                                                                                                                                        tGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCATTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCTGTGTCCCATCTTCTATCAACCTTTTGAAggtgg             <  1:2323832/150‑1 (MQ=255)
                                                                                                                                          aTTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATCGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCTGTGTCCCATCTTCTATCAACCTTTTGAAGGTGGtt           <  2:3333243/150‑1 (MQ=255)
                                                                                                                                          aTTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCTGTGTCCCATCTTCTATCAACCTTTTGAAGGTGGtt           <  1:3229268/150‑1 (MQ=255)
                                                                                                                                          aTTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCTGTGTCCCATCTTCTATCAACCTTTTGAAGGTGGtt           <  2:365886/150‑1 (MQ=255)
                                                                                                                                             ttGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCTGTGTCCCATCTTCTATCAACCTTTTGAAGGTGGTTTCa        <  1:4448349/150‑1 (MQ=255)
                                                                                                                                                tATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTATCGCTTTGAGATAACGCTGTGTCCCATCTTCTATCAACCTTTTGAAGGTGGTTTCTCCt     >  2:748492/1‑150 (MQ=255)
                                                                                                                                                tATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAATGCTTTGAGATAACGCTGTGTCCCATCTTCTATCAACCTTTTGAAGGTGGTTTCACCt     >  1:3381822/1‑150 (MQ=255)
                                                                                                                                                tATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCTGTGTCCCATCTTCTATCAACCTTTTGAAGGTGGTTTCACCt     >  1:2415598/1‑150 (MQ=255)
                                                                                                                                                   cttcttGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCTGTGTCCCATCTTCTATCAACCTTTTGAAGGTGGTTTCACCTGTa  <  1:3315615/150‑1 (MQ=255)
                                                                                                                                                   cttcttGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCTGTGTCCCATCTTCTATCAACCTTTTGAAGGTGGTTTCACCTGTa  <  1:4639147/150‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                     
CGTACGTACCGGGCGGGCTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGATAACGCTGTGTCCCATCTTCTATCAACCTTTTGAAGGTGGTTTCACCTGTA  >  CP009273/1197587‑1197883

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: