| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,338,978 | G→A | 21.6% | intergenic (‑112/+36) | yciZ ← / ← gmr | uncharacterized protein/cyclic‑di‑GMP phosphodiesterase; csgD regulator; modulator of Rnase II stability |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,338,978 | 0 | G | A | 21.6% | 467.7 / 124.2 | 208 | intergenic (‑112/+36) | yciZ/gmr | uncharacterized protein/cyclic‑di‑GMP phosphodiesterase; csgD regulator; modulator of Rnase II stability |
| Reads supporting (aligned to +/- strand): ref base G (97/66); new base A (32/13); total (129/79) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.69e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.63e-01 | |||||||||||
Only 100 of 208 total aligned reads displayed.
TACGTTCGGCAACGCGCTGGGCATCAAATTCAGACATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCCGCTCATTGATCCCGTTCTTGGTTAAAAAAGCAT > CP009273/1338830‑1339126 | tACGTTCGGCAACGCGCTGGGCATCAAATTCAGACATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGa < 1:3288974/150‑1 (MQ=255) cGTTCGGCAACGCGCTGGGCATCAAATTCAGACATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACg < 1:1148731/150‑1 (MQ=255) cGTTCGGCAACGCGCTGGGCATCAAATTCAGACATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACg < 1:2872756/150‑1 (MQ=255) cGGCAACGCGCTGGGCATCAAATTCAGACATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGat > 2:917609/1‑150 (MQ=255) cGGCAACGCGCTGGGCATCAAATTCAGACATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGat > 2:4339112/1‑150 (MQ=255) cAACGCGCTGGGCATCAAATTCAGACATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGAtata > 1:3319766/1‑150 (MQ=255) cAACGCGCTGGGCATCAAATTCAGACATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGAtata > 1:3636804/1‑150 (MQ=255) aaCGCGCTGGGCATCAAATTCAGACATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAg > 2:3778856/1‑150 (MQ=255) cgcTGGGCATCAAATTCAGACATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATAACGGGATATAGCGCt < 2:462940/150‑1 (MQ=255) tGGGCATCAAATTCAGACATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATAACGGGATATAGCGCTAAg < 2:1141377/150‑1 (MQ=255) tGGGCATCAAATTCAGACATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATAACGGGATATAGCGCTAAg < 1:857749/150‑1 (MQ=255) gggCATCAAATTCAGACATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGt > 1:3363649/1‑150 (MQ=255) gggCATCAAATTCAGACATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGt < 1:2424868/150‑1 (MQ=255) gCATCAAATTCAGACATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATAACGGGATATAGCGCTAAGtat < 1:445792/150‑1 (MQ=255) cATCAAATTCAGACATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGtata < 2:547509/150‑1 (MQ=255) aTCAAATTCAGACATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGtatat > 2:2166035/1‑150 (MQ=255) tCAAATTCAGACATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGtatata < 2:2278068/150‑1 (MQ=255) aaaTTCAGACATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGtatatata > 2:2083324/1‑150 (MQ=255) aaaTTCAGACATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATAACGGGATATAGCGCTAAGtatatata > 1:2654132/1‑150 (MQ=255) aaaTTCAGACATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATAACGGGATATAACGCTAAGtatatata > 2:1885518/1‑150 (MQ=255) aaTTCAGACATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTatatatat > 1:4501362/1‑150 (MQ=255) gACATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCt > 1:2274425/1‑150 (MQ=255) aCATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTa < 2:298958/150‑1 (MQ=255) aCATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTa < 2:16634/150‑1 (MQ=255) cATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGACTACGATATATAATGACGGGATATAGCGCTAAGGCTCTATATTCATCTAc > 2:45155/1‑150 (MQ=255) cATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTAc < 2:3655520/150‑1 (MQ=255) gACATCCTTATATCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATgcg < 2:389656/150‑1 (MQ=255) cATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATgcgcg > 1:4797930/1‑150 (MQ=255) ccTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCtt < 2:1795509/150‑1 (MQ=255) ccTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCtt > 2:3918364/1‑150 (MQ=255) ttATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCa < 1:2363090/150‑1 (MQ=255) ttATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCa > 2:3760994/1‑150 (MQ=255) ttATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCa > 1:1244116/1‑150 (MQ=255) ataGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGa < 1:4403851/150‑1 (MQ=255) ataGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATAACGGGATATAGCGCTAAGTCTATATATTCATCTACTTATGCGCGCTTCAGa > 1:3858726/1‑150 (MQ=255) ataGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATAACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGa > 1:3483390/1‑150 (MQ=255) aaaGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGt > 2:679679/1‑150 (MQ=255) gggggAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACATCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTta > 1:4023504/1‑150 (MQ=255) gggggAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTta > 1:689815/1‑150 (MQ=255) ggAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATAc > 1:2488746/1‑150 (MQ=255) gAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATAACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATAcc < 2:1775959/150‑1 (MQ=255) aaaaTGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATAACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCa > 2:3706492/1‑150 (MQ=255) aaaaTGAATAATCCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCa < 2:4152300/150‑1 (MQ=255) gAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATAACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGtt < 1:2826699/150‑1 (MQ=255) aataatGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTCTATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTc > 1:2921848/1‑150 (MQ=255) gCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGc > 1:1290727/1‑150 (MQ=255) gCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGc > 1:609923/1‑150 (MQ=255) gCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGc > 1:2257324/1‑150 (MQ=255) cAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCg > 2:3589710/1‑150 (MQ=255) aaaaTTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGAc > 2:1567755/1‑150 (MQ=255) aaaaTTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATAACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGAc > 1:4166897/1‑150 (MQ=255) aTTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGCTCGAAGGCGAcggc < 2:3801847/150‑1 (MQ=255) ttGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGAcggcg > 2:320474/1‑150 (MQ=255) ttGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGAcggcg > 2:556877/1‑150 (MQ=255) gCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCAt < 1:586462/150‑1 (MQ=255) cTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATc > 2:1574546/1‑150 (MQ=255) tAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCg < 2:4263674/150‑1 (MQ=255) aaaGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGt > 2:921231/1‑150 (MQ=255) aaaGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGt > 2:3362059/1‑150 (MQ=255) aaaGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGt > 2:3520523/1‑150 (MQ=255) aaaGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGt > 1:2565234/1‑150 (MQ=255) agagAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCCGCGTTCGAAGGCGACGGCGGGCATCGGttt > 2:1357286/1‑150 (MQ=255) gagaAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTg < 2:2967720/150‑1 (MQ=255) gagaAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTg > 1:4303310/1‑150 (MQ=255) agaAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTgg > 1:2355902/1‑150 (MQ=255) tgtTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATAACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGcaaac < 1:3133870/150‑1 (MQ=255) aCAGCAACGGCTAATTATCATCCAGGAATACGATATATAATAACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAAt < 1:1851420/150‑1 (MQ=255) aGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATcc > 2:1067522/1‑150 (MQ=255) aGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATcc < 1:3564694/150‑1 (MQ=255) aGCAACGGCTAATTATCATCCAGGAATACGATATATAATAACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATcc > 1:474682/1‑150 (MQ=255) aGCAACGGATTATTATCATACATGAATTCGATATATAATGACGGGATATATCGATAAGTATATATATTCATATACTTTTGCGCGCTTCATATAGCGTTTATACCAGCGTTCGAAGTCGACTTCGGGCATCGGTTTGGCAAACAAAAATcc < 1:1110219/150‑1 (MQ=255) cAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCtt > 1:2155599/1‑150 (MQ=255) aaCGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTg > 2:2374315/1‑150 (MQ=255) aaCGGCTAATTATCATCCAGGAATACGATATATAATAACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTg > 1:3132568/1‑150 (MQ=255) aCGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGc > 1:63609/1‑150 (MQ=255) cGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGcc < 2:1180341/150‑1 (MQ=255) cTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCCGCt > 2:1321560/1‑150 (MQ=255) tAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCCGCTc < 1:4564113/150‑1 (MQ=255) tAATTATCATCCAGGAATACGATATATAATAACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCCGCTc > 1:3793807/1‑150 (MQ=255) aaTTATCATCCATGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCCGCTCa < 2:2634950/150‑1 (MQ=255) ttATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCCGCTCAtt > 1:200957/1‑150 (MQ=255) tcCAGGAATACGATATATAATAACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCCGCTCATTGATccc > 1:2048690/1‑150 (MQ=255) tcCAGGAATACGATATATAATAACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGAGCGCTTCAGAAATCGTTTAAACCAGCGTTCGAAGTCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCAGCTCATTGATccc > 1:1706400/1‑150 (MQ=255) cAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCCGCTCATTGATCCCGt > 2:1929068/1‑150 (MQ=255) cAGGAATACGATATATAATAACGGGATATAGCGCTAAGTATATATCTTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCCTCGGTTTGGCAAACAAAAATCCTTGCCGCTCATTGATCCCGt > 2:655117/1‑150 (MQ=255) aGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCCGCTCATTGATCCCGtt < 2:2566474/150‑1 (MQ=255) aaTACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCCGCTCATTGATCCCGTTCtt < 2:4788227/150‑1 (MQ=255) aTACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCCGCTCATTGATCCCGTTCTTg < 1:122801/150‑1 (MQ=255) tACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCCGCTCATTGATCCCGTTCTTgg < 1:2166035/150‑1 (MQ=255) cGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCCGCTCATTGATCCCGTTCTTGGtt < 2:1734907/150‑1 (MQ=255) gATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCCGCTCATTGATCCCGTTCTTGGTTa < 1:1604707/150‑1 (MQ=255) gATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCCGCTCATTGATCCCGTTCTTGGTTa < 1:2443009/150‑1 (MQ=255) gATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCCGCTCATTGATCCCGTTCTTGGTTa < 2:2758281/150‑1 (MQ=255) atatatAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGAGAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCCGCTCATTGATCCCGTTCTTGGTTaa < 1:2050397/150‑1 (MQ=255) tatataATAACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCCGCTCATTGATCCCGTTCTTGGTTaaa > 2:4716694/1‑150 (MQ=255) atataATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCCGCTCATTGATCCCGTTCTTGGTTaaaa > 1:4646892/1‑150 (MQ=255) ataATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCCGCTCATTGATCCCGTTCTTGGTTaaaaaa < 1:1041622/150‑1 (MQ=255) aaTAACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCCGCTCATTGATCCCGTTCTTGGTTAAAAAAGc > 2:4478871/1‑150 (MQ=255) aTGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCCGCTCATTGATCCCGTTCTTGGTTAAAAAAGCa < 2:423921/150‑1 (MQ=255) tGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCCGCTCATTGATCCCGTTCTTGGTTAAAAAAGCAt > 1:1765401/1‑150 (MQ=255) | TACGTTCGGCAACGCGCTGGGCATCAAATTCAGACATCAAGGACATCCTTATAGCAAAAGGGGGAAAATGAATAATGCAAAAATTGCCGCTAAAAGAGAAGTGTTTAACAGCAACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATATAGCGCTAAGTATATATATTCATCTACTTATGCGCGCTTCAGATAGCGTTTATACCAGCGTTCGAAGGCGACGGCGGGCATCGGTTTGGCAAACAAAAATCCTTGCCGCTCATTGATCCCGTTCTTGGTTAAAAAAGCAT > CP009273/1338830‑1339126 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |