| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,673,381 | C→A | 7.0% | S233* (TCA→TAA) | ydgH → | DUF1471 family periplasmic protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,673,381 | 0 | C | A | 7.0% | 688.4 / 3.0 | 232 | S233* (TCA→TAA) | ydgH | DUF1471 family periplasmic protein |
| Reads supporting (aligned to +/- strand): ref base C (92/113); new base A (6/21); total (98/134) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.66e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 245 total aligned reads displayed.
GAGCCCGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTATCAGGTTGCGA > CP009273/1673232‑1673530 | gagCCCGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGtcatc > 2:873191/1‑150 (MQ=255) agCCCGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGtcatca < 1:1137341/150‑1 (MQ=255) cccGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCaaa < 2:2514428/150‑1 (MQ=255) cGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAg < 2:2357866/150‑1 (MQ=255) gATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAggc > 2:1443390/1‑150 (MQ=255) gtgATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAggcggg < 1:305306/150‑1 (MQ=255) tgATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCCTCAAAAggcgggc > 1:1078785/1‑150 (MQ=255) tgATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAggcgggc > 1:3535080/1‑150 (MQ=255) tgATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAggcgggc > 2:1393312/1‑150 (MQ=255) gATCCCGGCAGAGTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAggcgggcg < 1:841570/150‑1 (MQ=255) tCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGtt < 2:372424/150‑1 (MQ=255) tCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGtt < 1:731964/150‑1 (MQ=255) cccGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTa < 2:4744094/150‑1 (MQ=255) cgtcAGATTCCGAAGCAGGACGTTCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCACGTGTGTTGCGACTACCGCATCACCAATTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTaca < 1:855302/147‑1 (MQ=255) ttCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCAc < 1:897691/150‑1 (MQ=255) tCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACg < 1:1440112/150‑1 (MQ=255) gAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTc > 2:3493487/1‑150 (MQ=255) aGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTccc > 1:3187971/1‑150 (MQ=255) aGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTccc < 1:980611/150‑1 (MQ=255) aGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTccc > 2:2240212/1‑150 (MQ=255) aGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCGTCTTTGAAACCCAGGCATCAAAAGGCGGGCGTTACACCGTCACGCTccc > 2:4687413/1‑150 (MQ=255) cAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTTAAACCCAGTCATCAAAAGGCGGGCGGTACACCGTCACGCTCCCgg > 1:1784942/1‑150 (MQ=255) aCGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATgg < 1:3014385/150‑1 (MQ=255) aCGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATgg < 1:316309/150‑1 (MQ=255) cGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGTAACCCAGTCATCAAAAGGCGGGCGTTAAACCGTCACGCTCCCGGATGGc > 2:409870/1‑150 (MQ=255) cAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTa < 2:2859363/150‑1 (MQ=255) cAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTa > 2:2114592/1‑150 (MQ=255) gCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCgaagaa < 1:1059007/150‑1 (MQ=255) gCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCgaagaa < 1:3511987/150‑1 (MQ=255) ccGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACCCTCCCCGATGGCACTAAAGTCGAAGAAc > 1:4293271/1‑150 (MQ=255) cGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACt > 2:1112005/1‑150 (MQ=255) tGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCGTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCCCGAAAGTCGAAGAACTGaa > 2:3440744/1‑150 (MQ=255) ggCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAAACCAGTCATCAAAAGGCGGGCGTTACAACGTCACGCTCCCGGATTGCAATAAATTCGAATAACTGAAc > 2:2964988/1‑150 (MQ=255) gAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGGTGGCACTAAAGTCGAAGAACTGAACaaa > 2:1509812/1‑150 (MQ=255) gAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTTAACaaa > 2:4795629/1‑150 (MQ=255) gAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACaaa < 2:4596783/150‑1 (MQ=255) gAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACaaa < 2:2671551/150‑1 (MQ=255) gAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACaaa < 1:525803/150‑1 (MQ=255) aaGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAATTCGAAGAACTGAACaaat > 1:2364567/1‑149 (MQ=255) aGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGc < 1:1310542/150‑1 (MQ=255) aGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGc < 1:3366843/150‑1 (MQ=255) aGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGc < 1:172102/150‑1 (MQ=255) aGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGc < 2:789303/150‑1 (MQ=255) ccGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTTAAACCCACTCAACAAAATGCGGGCGTTACACCCTCACCCAACCCGAAGGCACAAAAATCGAAGAAAAGAACaaaacca > 1:1635578/1‑146 (MQ=255) ccGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGa < 1:3791945/150‑1 (MQ=255) ccGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGa < 2:161412/150‑1 (MQ=255) ccGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGa < 2:3986540/150‑1 (MQ=255) cgcgAAGAAAGTTGAGAGCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGAc < 1:622486/150‑1 (MQ=255) cgAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCg < 2:3643785/150‑1 (MQ=255) gaagaaAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAACTCGAAGAACAGAACAAAGCGAcccc > 1:2703427/1‑148 (MQ=255) aagaaAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTATTTGAAAACCAGTCAACAAAATGCGGGCGTTAAACCGTCACGCTCCCGGATGGCACTAAAGTAGAATAACAGAACAAAGCGACCGCa > 1:691643/1‑150 (MQ=255) gaaAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAAACCAGTCAACAAAAGGCGGGCGTTAAACCGTCACGCACCCCGATGGCACAAAAGTCGAAGAACAGAACAAATCGACCGCAGc > 2:3287671/1‑150 (MQ=255) aaGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGGCACGCTCCCGGATGGCACAAAAGTCGAAGAACAGAACAAATCGACCGCAGCga > 2:4469110/1‑150 (MQ=255) gTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTGGGTCGCTTCTTTGAAACCCAGTCATCAAATGGCGGGCGTTACACCGTCACGCTCCCGGTTGGCACTAAAGTCGAATAACTGAACAAAGCGACCGCAGCgatg < 2:3140687/150‑1 (MQ=255) ttGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCGTCTTTGAAAACCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACAGAACAAAGCGACCCCAGCcatga > 1:2150273/1‑150 (MQ=255) agaTCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAAACCAGTCATCAAAAGGCGGGCGGTACACCGTCACGCTCCCCGATGGCACTAAAGTAGAAGAAAAGAACAAAGCGACCGCAGCGATGATgg > 1:3041707/1‑150 (MQ=255) gaTCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTATTTGAAAACCACTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCCGATGGCACTAAAGTCGAAGAACTTAACAAACACACCGCAGCGatgatgtt > 2:2249591/1‑148 (MQ=255) aTCCCGGGTGTTGCGACTACCGAATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGTTGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTc < 2:4851685/150‑1 (MQ=255) ccggggTGTTGCCACTACCGCAACACCAAGTTCTGATGTCGGTCGTTTCTTTGAAACCCAGTCATAAAATGGCGGGCGTTACACCGTCCCGTTCCCGTTTGGCACTAAAGTCGAAGAACTTAACAAAGCGACCGCAGCGATGATGGTccc < 2:901007/147‑1 (MQ=255) ccGGGTGTTGCGACTCCCGAATCACAAAGTTATGATGGCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGGGGGCGTTACACCGTCACGCTCCCGGATGGAACTAAAGTCGAACAACTCAACAAAGCGACCGCAGCGATGATGGTCCCg < 2:1423280/150‑1 (MQ=255) cGGGTGTTGCGACTACCGCAACACAATTTTCTGATGTGGGTCGCTTTTTTTAAACCAAGTCAAAAAACGGGGGGCTTTACACCGTCACGCTCCCGTTTGCCACTAACGTCCAACAACTCAACAACGCGACCGCAGCGATGATGGTCCCGt < 2:3664976/150‑1 (MQ=255) ggTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCGTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATTGTCCCGTTc > 2:851343/1‑150 (MQ=255) tgtTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATAAAAATGCGGGCGTTACACCGTCACCCTCCCCGATGGCACGAAATTAGGAGAACAGAACAAAACGACCGCAGCGATGATGGTCCCGTTCGa > 1:2189493/1‑150 (MQ=255) tgtTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTATTTGAAACCCAGTCATCAAAATGCGGGCGGTTAACCGTCACGCTCCCGGATGGCCCAAAAGTAGAATAACAGAACAAAGCGACCCCCGCGATGATGGTCCCCGTCGa > 1:4638383/1‑150 (MQ=255) ttGCGACTACCGCATCACAAAGTTCTTACGTCGGTCGCTTCTTTGAAACCCAGACATCAAATGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACa < 2:665552/150‑1 (MQ=255) tGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAg > 2:2805192/1‑150 (MQ=255) cGACTACCGCATCACCATGTTCTTAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAACGGCGGGCGTTACACCGTCACGCTCCCGGTTGGCAATAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCa < 2:1310850/150‑1 (MQ=255) gACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTATTTGAAACCCAGTCATCAAAAGGCGGGCGGTACACCGTCACGCTCCCGGATGGCACAAAAGTCGAATAACTGAAAAAATCGACCGCAGCGATGATGGTACCGTTCGACAGCAt > 1:2421585/1‑150 (MQ=255) tACCGCATCACCACGTTCTGATGTCGGTCGCTTCTTTGAACCCCCGTCACCAAACGGGGGGCGTTACACCGCCACGCGCCGGGTGGGCACTACCGTCGACGAACTGACCAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCaa < 1:4010650/150‑1 (MQ=255) tACCGCATCACAACGTTCGGATGTCGGTCGCTTCTTTGAAACCCCGTCATAAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGACGAATAACTGAACAACGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCaa < 2:475514/150‑1 (MQ=255) ccGCATCACCATGTTGTGAAGGGGGTCGCTTCTTTGAAACCCAGTCATCAAATGGGGGGCGTTACACGGTCACGCGCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAAt < 2:4293271/150‑1 (MQ=255) ccGCATCACCATGTTCTGATGTGGGTCGCTTCTTTGAACCCCAGACATCAAATGGCGGGGGTTACACCGACCCGCTCCGGGTTGGCACAAACGTCGAATAACTTAAAAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAAt < 1:2793319/150‑1 (MQ=255) cGCATCACCATTTTCGGAAGTCGGTCGCTTCTTTGAAACCCAGTCATAAAATGGCGGGCGTAACACCGTCACGCGCCCGGCTGGCACTAAAGTCCAACAACTTAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAAtt < 2:521006/150‑1 (MQ=255) cGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAAtt > 2:1846991/1‑150 (MQ=255) cGCAACACCAAGTTCTTATGTCGGTCGATTCTTTTAAACCCAGTCATCAAATGGCGGGCGTTACACCGACACGCTCCCGGCTGGCACTAACGTCCAACAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAAtt < 1:314285/150‑1 (MQ=255) gCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCCTTAAACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATtc > 2:2275830/1‑150 (MQ=255) aTCACCAAGTTCTGAAGTCGGTCGCGTCTTTGTAACCCAGTCAAAAAAAGGCGGGCGTTACACCCTCACCCACCCCGCTGGCACAAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATTGTCCCCTTCGACAGCATCAAATtcta > 1:4357095/1‑149 (MQ=255) ccAAGTTCTTAAGTCGGTCGCTTATTCTAAACCCAGACTACAAAAGGCGGGCTTTACACCGACACGCTCCCGGATGGCACTAAAGGCTAAGAACTTAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGc < 2:1798619/150‑1 (MQ=255) aaGTTCTGAAGTCGGTCGCTTCTTTGAAACCCCGTCATCAAAATGCGGGCGTTACACCCTCACGCACCCGGATGGCACTAAAATCGAAGAACAGAACAAAGCGACCGCCGCGATGATTGTCCCCGTCGACACCATCAAAATATCTTGCaa > 1:1168321/1‑150 (MQ=255) aaGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCACTGGCaa > 2:3389615/1‑150 (MQ=255) cTGATGTCGGTCGCTTCTTTGAAACCCAGTCATAAAAAGGCGGGCGTTCCACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACGGACCAACGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACg < 2:1906877/150‑1 (MQ=255) tcgataattttAAACCCATCAATAAAACGGCGGGCGTTCCCCCGACACGCCCCGGTATGCCAATAAAGTCCAAGAACTCAACAACGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGAc < 1:4559993/143‑1 (MQ=255) cgCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGAcc > 1:3936472/1‑150 (MQ=255) cgCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGAcc > 1:3935960/1‑150 (MQ=255) gCTTCTTTGAAACCCCGTCATCAAATGGCGGGCGTTACACCGTCACGCTCCGGGATGGCAATAAAGTCGAAGAACTTAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCg < 2:4239451/150‑1 (MQ=255) gCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGTTGGCACTACAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCg < 2:2473290/150‑1 (MQ=255) cttcttTGAAGCCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGa > 1:1524887/1‑150 (MQ=255) cttcttTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGa > 1:4502547/1‑150 (MQ=255) tcttTGAAACCCAGACATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAACGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAg < 2:3535080/150‑1 (MQ=255) tatttGAAACCCAGTCATCAAAAGGGGGGCGTTACACCGTCACGCTCCGGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAg < 2:1078785/148‑1 (MQ=255) tttaaaCCCATTCATCAAAAGGCGGGCGTTAAACCGTCACGCTCCCGGATGGCACTAAAGTCTAAGAACGTAACAACGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGtct < 2:4724439/147‑1 (MQ=255) taaaCCCAGACAACAAATGGGGGGGTTTACACCGTCCCGCTCCCGTTTGGCACTAAAGCCTAAGAACTTAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGtctct < 1:661850/149‑2 (MQ=255) gAAACCCTGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAACGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTcc < 2:1537962/150‑1 (MQ=255) gAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCTAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTcc < 2:4379358/150‑1 (MQ=255) aaCCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTa > 1:1258194/1‑150 (MQ=255) ccccAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCGGGATGGCACTAAAGGCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTAt < 2:675858/149‑1 (MQ=255) cccAGTCATCAAACGGCGGGCTTTACACCGACACGCTCCCGTATGCAAATAAAGTCCAACAACTTAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTATc < 1:2724172/150‑1 (MQ=255) aGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTATCAgg > 1:2903540/1‑150 (MQ=255) aGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTATCAgg > 1:1000780/1‑150 (MQ=255) tcatcaAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTATCAGGtt > 2:4141028/1‑150 (MQ=255) | GAGCCCGGATGTGATCCCGGCAGATTCCGAAGCAGGACGTGCAGCTCTGGCTGCCGGTGGCGAAGCCGCGAAGAAAGTTGAGATCCCGGGTGTTGCGACTACCGCATCACCAAGTTCTGAAGTCGGTCGCTTCTTTGAAACCCAGTCATCAAAAGGCGGGCGTTACACCGTCACGCTCCCGGATGGCACTAAAGTCGAAGAACTGAACAAAGCGACCGCAGCGATGATGGTCCCGTTCGACAGCATCAAATTCTCTGGCAACTACGGCAACATGACCGAAGTCTCCTATCAGGTTGCGA > CP009273/1673232‑1673530 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |