| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,170,724 | G→T | 19.6% | intergenic (‑41/+267) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,724 | 0 | G | T | 19.6% | 212.0 / 9.6 | 116 | intergenic (‑41/+267) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Reads supporting (aligned to +/- strand): ref base G (38/46); new base T (15/11); total (54/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.69e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 121 total aligned reads displayed.
TTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATAC > CP009273/2170576‑2170873 | tCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑Gaa < 2:1970251/150‑1 (MQ=255) cTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGCTTTAAAAATAT‑AAT‑Gaaa > 2:3123679/1‑150 (MQ=255) cTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAAAAT‑AAT‑Gaaa > 2:3124616/1‑150 (MQ=255) accacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGGTTTAAAAATAA‑AAT‑TAAattatt > 1:1090930/1‑150 (MQ=255) acacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTAttt < 1:491055/149‑1 (MQ=255) cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAATAT‑AAT‑GAAAATAtttt > 2:1545274/1‑149 (MQ=255) acTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTTTTTTTAAAAAAAA‑AAT‑TAAAATAttttt > 1:2123853/1‑148 (MQ=255) acTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTAAAAAAAT‑AAT‑TAAATTAttttt > 1:3562270/1‑148 (MQ=255) acTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGAACATTTTCATATCCTGTCGTGTGTTTTAGATTTCAAAAAAA‑AAA‑TAAAATAttttt > 1:3562281/1‑148 (MQ=255) tGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTATTTGtttt < 2:4463034/150‑1 (MQ=255) cATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAAAAA‑AAT‑TAAATTAAttttttttt > 2:292015/1‑149 (MQ=255) aTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTaa > 2:2634303/1‑150 (MQ=255) gTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAata < 2:2230287/150‑1 (MQ=255) tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAatat < 1:620950/150‑1 (MQ=255) tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAatat < 1:2844384/150‑1 (MQ=255) agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAAAAT‑AAT‑GAAATTATTTGTTTTTAAATATCgaga > 2:358376/1‑150 (MQ=255) gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAATAT‑AAT‑TAAATTATTTGTTTTTTAatatatatat > 1:4046514/1‑144 (MQ=255) aTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑Ta < 1:2403108/150‑1 (MQ=255) aTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTGTTTGATTTTTAAAAATAAATATAAAATATTTTTTTTtatatagaaatt > 1:2433680/1‑144 (MQ=255) ttGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑Taa < 1:235210/150‑1 (MQ=255) gtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACg < 2:2785914/150‑1 (MQ=255) gAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGAt < 2:3959314/150‑1 (MQ=255) gAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGAt < 2:3959338/150‑1 (MQ=255) gAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAAAT‑AAT‑GAAATTATTTTTTTTTAAATATAGAGA‑TAACGAt > 2:1549737/1‑150 (MQ=255) gAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTAAAAATAT‑AAA‑GTAATTATTTGTTTTTAAATATAGAGA‑TAAAGAt > 2:2221263/1‑150 (MQ=255) atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTTGTTTTGAAAATAT‑AAT‑TGAATTATTTGTTTTTTTATATAGAGA‑TAAAGAtaa > 2:931090/1‑148 (MQ=255) atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATca < 1:3733324/150‑1 (MQ=255) atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATca < 1:1287918/150‑1 (MQ=255) ttGAATGCCGGAACCGCATAACCGCCGCGCGGTGCGGTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGATTTCAAAATAT‑AAA‑GAAATTATTTGTTTTTAAATATCGCGA‑TAACCATCACaa > 2:2355151/1‑150 (MQ=255) tGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACaaa < 1:1889909/150‑1 (MQ=255) tGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGATTTGAAAATAT‑AAT‑GAAAATATTTTTTTTTAAATATCGAGA‑TAAACATCACaaa > 2:3333638/1‑150 (MQ=255) gAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTGGATTTAAAAAAAT‑AAA‑GAAATTATTTGTTTTTTAATAAAGAGA‑TAACGATCaaaaaa > 2:92484/1‑150 (MQ=255) gAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTATTTTTTTTTAAATATAGAGA‑TAACGATCACaaaa > 2:2521939/1‑150 (MQ=255) gAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTCAAAAAAT‑AAA‑TAAAATATTTTTTTTTTAATATAGATA‑TAAAGATAaaaaaa > 1:804018/1‑150 (MQ=255) aaTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACaaaaa < 2:4340816/150‑1 (MQ=255) aTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAAc < 1:4216316/150‑1 (MQ=255) tGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACg < 1:1163110/150‑1 (MQ=255) tGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACg < 1:912793/150‑1 (MQ=255) tGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACg < 1:1163828/150‑1 (MQ=255) tGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACg < 1:1163127/150‑1 (MQ=255) gCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTAGATTTTAAAAAAA‑AAT‑TTAAATTTTTTTTTTTTAATATATTGA‑TAAAGATaaaaaaaaaca > 1:2289231/1‑147 (MQ=255) gCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTTGATTTAAAAATAT‑AAT‑TTAATTATTTGTTTTTTTATATAGATA‑TAACAATaaaaaaaaaaa > 1:2289194/1‑147 (MQ=255) ccGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGAc < 1:3960572/150‑1 (MQ=255) ccGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAAAAT‑AAT‑GAAATTATTTTTTTTTAAATATAGAGA‑TAAAGATCACAAAAAAGAc > 2:747405/1‑150 (MQ=255) cATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAA‑GAAATTATTTGTTTTTTAATATAGAGA‑TAACGATAACAAaaaagaaaaaaagaaa > 2:3081464/1‑150 (MQ=255) aTAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGATTTAAAAATAT‑AAT‑TTAATTATTTTTTTTTTTAAATCGAGA‑TAACGATCAAAAAAAAGACAatattatca > 2:3052906/1‑145 (MQ=255) tAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCTATTTCAAAATAT‑AAT‑GAAATTATTTTTTTTTAAATATCGTGA‑TAACGATCACAAAAACGACAATATGAAAat < 2:1569744/150‑1 (MQ=255) gccgcGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAATAT‑AAT‑TAAATTATTTTTTTTTAAATATAGAGA‑TAACGATCAAAAAAAAGACAAAATGAAAattatta > 2:3621279/1‑149 (MQ=255) cgcTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTAAAAATAA‑AAA‑GAAATTATTTTTTTTTTAATATAGAGA‑TAAAGATCACAAAAAAGACAAAATGAAAAATATTAgagg > 2:1820085/1‑150 (MQ=255) cgcTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAATAT‑AAT‑GAAATTATTTGTTTTTTAATATCGAGA‑TAACGATAACAAAAAAGACAAAATTAAAAATATTAgagg > 2:1819889/1‑150 (MQ=255) cTGTGGGTTGTTCAGCATCTGCTTTGTCGAACCCACTTACATTTACAAATCCTGTCGTTTTTTTTCTATTAAAAAATAT‑AAT‑CAATTTATTTTTTTTTAAATATCTAGA‑TAACGACCACAAACACGACAATATGAAAATTATTCgaggag < 1:964353/150‑1 (MQ=255) tgtgCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTGGATTTCAAAATAT‑AAA‑GAAATTATTTGTTTTTAAATATAGAGA‑TAACGATAACAAAAAACACAAAATTAAAATTATTAGAGgtgt > 2:1853524/1‑150 (MQ=255) ttgggttgtgCAGCATCTGCTTTTTCGATACAACGTACATTTTCATATCCTGTCGTTTTTTTTATTTTTCAAAATAT‑AAT‑TCAATTTTTTGTTTTTAAATATCTTGA‑TAACTAACACAAAAACGACAATATGAAAATTATTCGAGGAGTg < 2:3091331/146‑1 (MQ=255) gtgCGTTGTTCAGCATCTGCTTTGTCGATCCCACGTACATTTTCATATCCTGTCGTTTGTTTTCTATTACAAAATAT‑AAT‑CAAATTATTTTTTTTTAAATATCGCTA‑TAACTAACACAAACACGACAATATGAAAATTATTCGAGGAGTg < 1:2326414/150‑1 (MQ=255) ttgtaCAGCATCTGCTTTGTCTATACCACTAACATTTTCATATCCTGTGGTTTGTTTTCTATTACAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAgg < 1:1167065/150‑1 (MQ=255) cATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTTGTTTTAAAAAAATAAAT‑AAAATAATTTTTTTTTAAA‑ATAGAGA‑AAAAGATAAAAAAAAAAACAAAAATAAAAAAATTATAGGAGTGTAATTG‑‑aaaaaaa > 1:2125116/1‑150 (MQ=255) tgtGCTTTGTCTATACCACGTAAATTTTCATATCCTGTCGTTTTTTTTCTATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGATA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACg < 2:2564844/148‑1 (MQ=255) cTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCTTTTGTTTTCGATTTAAAAATAT‑AAT‑GAAATTATTTTTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACgg < 2:3149686/150‑1 (MQ=255) tgatttGTCTATACCACTTACATTTTCATATCATTTCTTTTGTTTTCTATTAAAAAATAT‑AAT‑TAAATTATTTGTTTTTAAATATCGATA‑TAACGATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGc < 2:1083184/147‑1 (MQ=255) gTCGATACCACGTACTTTTTCATATCCTGTCTTTTGTTTTCTATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCg < 2:1121703/150‑1 (MQ=255) gTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑TAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCg < 2:1121739/150‑1 (MQ=255) tCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTCAAAATAA‑AAT‑GAAATTATTTTTTTTTAAATATAGAGA‑TAACGATAAAAAAAAAGACAAAATGAAAATTATTAGAGGAGTGAAAGGC‑‑AAAAAAAAGGCCTCCCGa > 2:2717329/1‑150 (MQ=255) aCCACGTACATTTTCATATCCTGTCGTGTTTTTTCGTTTTAAAAATAT‑AAT‑GAAATTATTTTTTTTTAAATATAGAGT‑TAACGATAACAAAAAAGAAAATATGAAAATTATTAGAGGTGTGAAAGGC‑‑ACAAAAAAGGCCTCCCGCTAggg > 2:2784512/1‑150 (MQ=255) acttACTTTTTCATAGCCTGTCTTTTGTTTTCTATTTCAAAATAT‑AAT‑GAAATTATTTTTTTTTAAATATCGATA‑TAACTATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAg < 1:700624/147‑1 (MQ=255) cGTACATTTTCATTTCATGTCGTTTTTTTTCGATTTAAAAATAT‑AAT‑GAAATTTTTTTTTTTTAAATATCTAGA‑AAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGc < 2:4154047/150‑1 (MQ=255) aCATTTTCATATCCTGTCGTGTGTTTTAGGTTTAAAAAAAT‑AAA‑TAAAATATTTTTTTTTTAATATAGATA‑TAAAGAAAACAAAAAAAAAAAAATTAAAATTAATCGATGGGGGAAATTC‑‑AAAAAAAAAGCCACCCGAAAGGGTAgacct > 2:2912458/1‑146 (MQ=255) cATTTTCATATCCTGTCGTGTGTTTTGGTTTTTAAAAAAT‑AAA‑GAAAATATTTTTTTTTTAATATAGAGAGTAAC‑AAAACAAAAAAGACAAAATTAAAAGTATTAGAGGGGTGAAAGGC‑‑AAAAAAAACGCCTCCCGCTCGGGTAGCCggt > 2:4670805/1‑148 (MQ=255) tttttCATATCCTGTCTTTTTTTTTCTATTTCAAATTAT‑AAT‑GAAATTATTTTTTTTTAAATATCTATA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAg < 2:166990/149‑1 (MQ=255) aTTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAg < 2:4418954/150‑1 (MQ=255) tttgtttTCTATTTAAAAATAT‑AAT‑TAAATTATTTGTTTTTAAATATCGATA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtttt < 1:1545274/150‑1 (MQ=255) ttttttCTATTTCAAAATAT‑AAT‑TAATTTTTTTTTTTTTAAATATCGATA‑TAACGATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTa < 1:292015/148‑1 (MQ=255) ttttttCTATTACAAAATAT‑AAT‑TAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTa < 2:1497114/148‑1 (MQ=255) tgtttTCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTa > 2:3479505/1‑150 (MQ=255) ttttCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTa > 2:3314608/1‑150 (MQ=255) ttttCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCA‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGGGTTTTTAt > 2:3314540/1‑150 (MQ=255) tCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGATA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCg < 2:2816374/150‑1 (MQ=255) tCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGAGAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCg > 2:3637939/1‑150 (MQ=255) gATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGa > 1:1838173/1‑150 (MQ=255) gATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGa > 1:1838545/1‑150 (MQ=255) gATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCAGGa > 1:1840619/1‑150 (MQ=255) attaaaaaataa‑aat‑TAAATTTTTTTTTTTTAATTTTCTATA‑TAACTAAAAAAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGAt < 1:980113/145‑1 (MQ=255) ataaaaaaaaaT‑AAT‑CAAATTATTTTTTTTTAAATATCTATA‑AAACTAACAAAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGAt < 1:978646/145‑1 (MQ=255) aTTTCAAAATAT‑AAT‑GAATTTATTTTTTTTTAAATATCGAGA‑TAACTATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGAt < 1:2755094/150‑1 (MQ=255) ttacAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATg < 2:328135/147‑1 (MQ=255) ttCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGc > 1:4029111/1‑150 (MQ=255) ttCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGc > 1:4029072/1‑150 (MQ=255) taaaaaTAT‑AAT‑GAATTTTTTTTTTTTTAATTATCTAGA‑TCCAGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCg < 1:2089598/148‑1 (MQ=255) aaaaaaTAT‑AAT‑GAATTTTTTTTTTTTTAAATATCTATA‑TACCTAACAAAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCg < 1:2089179/148‑1 (MQ=255) aaaTAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGgtg > 2:3762421/1‑150 (MQ=255) aaaTAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGAGAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGgtg > 2:3308079/1‑150 (MQ=255) atat‑AAT‑GAAATTTTTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTa < 2:1090930/150‑1 (MQ=255) atat‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTa > 2:3915236/1‑150 (MQ=255) atat‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTa > 2:3915141/1‑150 (MQ=255) atat‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTa > 1:854050/1‑150 (MQ=255) atat‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTa > 2:2236234/1‑150 (MQ=255) at‑aAT‑TAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTaaa < 1:395780/150‑1 (MQ=255) aat‑taattTATTTGTTTTTAAATATCGAGA‑AAACGATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACa < 2:1641561/150‑1 (MQ=255) aaT‑GAATTTTTTTTTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACa < 1:4371643/150‑1 (MQ=255) gAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACACTATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCACAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATAc > 2:4699832/1‑150 (MQ=255) gAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATAc > 2:1041931/1‑150 (MQ=255) | TTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATAT‑AAT‑GAAATTATTTGTTTTTAAATATCGAGA‑TAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGC‑‑AAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATAC > CP009273/2170576‑2170873 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |