| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 169,940 | T→A | 11.2% | intergenic (+9/+149) | fhuB → / ← hemL | fused iron‑hydroxamate transporter subunits of ABC superfamily: membrane components/glutamate‑1‑semialdehyde aminotransferase (aminomutase) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 169,940 | 0 | T | A | 11.2% | 679.0 / 12.2 | 251 | intergenic (+9/+149) | fhuB/hemL | fused iron‑hydroxamate transporter subunits of ABC superfamily: membrane components/glutamate‑1‑semialdehyde aminotransferase (aminomutase) |
| Reads supporting (aligned to +/- strand): ref base T (78/133); new base A (33/3); total (114/137) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.49e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 262 total aligned reads displayed.
CTGGTGGGTGGTTTACTGCTGGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGAT > CP009273/169791‑170089 | tggtggGTGGTTTACTGCTGGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTGC‑ata > 1:4677108/1‑150 (MQ=255) ggtgggtgGTTTACTGCTGGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑atat < 2:719478/150‑1 (MQ=255) ggtgggtgGTTTACTGCTGGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑atat < 1:4876010/150‑1 (MQ=255) gtgggtggTTTACTGCTGGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTAA‑Atata > 1:2381187/1‑150 (MQ=255) ggtggtTTACTGCTGGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTGAATTTTTAC‑ATATAAca > 1:4848950/1‑149 (MQ=255) ggtTTACTGCTGGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGcc < 1:333675/150‑1 (MQ=255) tttACTGCTGGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCAATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCt < 2:3378379/150‑1 (MQ=255) aCTGCTGGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTa < 2:2800919/150‑1 (MQ=255) tgctgGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTTATTTTTAC‑ATATAAAGGCCCAGTAcc > 1:3961971/1‑149 (MQ=255) tgGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTTATTTTTAC‑ATAAAAAGGCCCGGTACGcca > 1:1467884/1‑149 (MQ=255) tgGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCt < 2:2092724/150‑1 (MQ=255) tgGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTAC‑ATATAAAGGCCCAGTACGCCt > 2:656566/1‑150 (MQ=255) tgGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTAA‑ATATAAAGGCCCTGTAAGcca > 2:656631/1‑149 (MQ=255) tgGTGTTCGCTGACTGGTGTGGGCGGAGGGTGCTGTTTCCATTCCAGATCCCGGGGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATCACGGCCCTGTACGCCt < 1:2040527/150‑1 (MQ=255) ggTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGTGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAAATTTTAA‑ATAAAAAGGACCTGTAAGCCTg > 2:4333631/1‑150 (MQ=255) ggTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTGTATTTTTTC‑TTATTAACGCCCCGTTCGccag > 1:80626/1‑148 (MQ=255) gtgtTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTgg < 1:1514621/150‑1 (MQ=255) gtgtTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTAC‑ATATAAAGGCCCAGTACGCCTgg > 2:2975501/1‑150 (MQ=255) gtgtTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTGAATTTTTAC‑ATATAACGGCCCAGTACGCCTgg > 2:4793704/1‑150 (MQ=255) tgtTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTTATTTTTTT‑ATATAAAGGCCCAGTACGGCAGGa > 1:4317616/1‑150 (MQ=255) ttCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAAATTTTAC‑AAATAACCGCCCGGTAAGCCAGGACg > 1:2794379/1‑150 (MQ=255) cGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTAAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGa < 1:214323/150‑1 (MQ=255) cTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATa < 2:965379/150‑1 (MQ=255) cTGACTGGTGGGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATa < 2:3793172/150‑1 (MQ=255) tGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTGAATATTTTC‑ATAAAAACACCCCGTAAGCccggccggcaaa > 1:4092706/1‑146 (MQ=255) tGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTTATTTTTAC‑AAATAAAGGCCCAGTAAGCCAGGGCGGGTAAATCg > 1:188310/1‑150 (MQ=255) tGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTAC‑ATATAAAGGCCCTGTAAGCCTGGACGGTTAAAGcc > 2:3477930/1‑149 (MQ=255) tgtgGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTAC‑AAAAAACGGCCCTGTAAGCCAGGACGGATAAAGCGttt > 1:296215/1‑150 (MQ=255) tgtgGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTAA‑ATATAAAATCCCGGTAAGCCAGGAGGGGTAAATCGgtt > 1:294872/1‑150 (MQ=255) tgtgGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAAATTTTAC‑AAAAAACGGCCCAGTACGCCAGGACGGATAAAGCGttt > 1:3245826/1‑150 (MQ=255) tgGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTATGCCTGGACGGATAAAGCGTTTAc < 1:3593139/150‑1 (MQ=255) cGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTTATTTTTTA‑ATATAAAGGCCCGGTACGCCAGGCCGGCTAAAGCGGTTAAGCG‑a > 1:3502500/1‑150 (MQ=255) ggATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑Ac < 1:4415052/150‑1 (MQ=255) ggATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑Ac < 1:2564590/150‑1 (MQ=255) gATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACa < 1:1188683/150‑1 (MQ=255) tGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAAATTTTGC‑AAATAACGGCCCAGTAAGCCGGGACGGATAAAACGTTTAAGCG‑ACAACGGa > 2:1444594/1‑150 (MQ=255) tttCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTTATTTTTAC‑ATATAAAGGCCCGGTAAGCCGGGACGGATAAAGCGTTTAAGCG‑ACAACGGATGccc > 2:3428234/1‑150 (MQ=255) tttCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGccc < 2:3017658/150‑1 (MQ=255) tccattccaGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTGC‑AAATAACGGCCCAGTACGCCTGGACGGATAAAGCGGTTACGCG‑ACAACCGATGCCCGa > 2:1848410/1‑150 (MQ=255) cattccaGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTGC‑AGATAAACGCCCGGGACCCCGGGGCGGGGAAACCCGTTACGCC‑CCAACCGAGGcccccag > 2:4166012/1‑146 (MQ=255) cattccaGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTAC‑AAAAAAAAGCCCATGACGCCAGGACGGATAAATAGGTTTAGCG‑ACAACCGCTGCCCCATg > 1:1095354/1‑150 (MQ=255) attccaGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTGAATTTTTTG‑ATATAAAGGCCCGGTAAGCCGGGGCGGATGATGCGGGTTCGGG‑GCAACGGGTGGCCGATGc > 2:834543/1‑150 (MQ=255) tccaGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTGAATTTTTGC‑ATAAAAACGCCCCGGAAGCCCGGACGGGGAAAAAGGTTACGCG‑CCCACCGCTGcccccggcga > 1:1395337/1‑143 (MQ=255) accaGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTGGAGAACGCAGCGCCTTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGa < 1:1612277/149‑1 (MQ=255) ccaGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTGAATTTTTGC‑ATAAAAACGCCCTGTAAGCCAGGGAGGATAAAACGGTTAAGCG‑ACAACCGATGCCCCCTGCGAc > 1:1522587/1‑150 (MQ=255) caGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATCACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACg < 1:2934510/150‑1 (MQ=255) caGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACg < 2:3286919/150‑1 (MQ=255) caGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACg < 1:75476/150‑1 (MQ=255) caGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTAC‑ATAAAAAAGCCCGGTAAGCCAGGACGGATAAATCGTTTAAGCG‑ACAACACCAGCCCGAGGCGAcc > 1:1451515/1‑149 (MQ=255) tCCCGGCGGGGCTGCTGTCAACATTTATCGGCGCCCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCTTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTgg < 1:4466914/150‑1 (MQ=255) cccGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTAC‑ATATAAAGGCCCCGTACGCCAGGACGGGTAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCAGgc > 2:2796372/1‑150 (MQ=255) cggcggGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTAC‑AAATAACGGCCCCGTAAGCCGGGCCGGATAAAGCGGTTACGCG‑ACAACGGATGCCCCATGCGACGCTGgcgc > 2:162291/1‑150 (MQ=255) ggCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTa < 2:4471341/150‑1 (MQ=255) ctgctgTCAACCTTTCTCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATCACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATc < 1:2488101/150‑1 (MQ=255) tgctgTCAACCTTTATCGGCGCGCCATATTTTCTCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCg < 2:4723773/150‑1 (MQ=255) tgctgTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCg < 1:656609/150‑1 (MQ=255) gctgTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCgg < 2:2603487/150‑1 (MQ=255) gTCAACCTTTATCGGCGCGCCATATTTTATCTATTGGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGcc < 2:1314569/150‑1 (MQ=255) tCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCt < 1:2394607/150‑1 (MQ=255) tCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAAATTTTAC‑AAAAAACCGCCCAGTACCCCAGGACCGAAAAAACGGTTTAGCGCACAACGAAT‑CCCCAAGCGACGCAGGCGCCGCATATAGGGcca > 1:340618/1‑149 (MQ=255) cTTTATCGGCGCTCAATATTTTATCTATTTTTTGAGAAAGCAGAGCCTTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACaaa < 1:1335108/150‑1 (MQ=255) cTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTAC‑ATATAAAGGCCCTGTACGCCTGGACGGATAAAGCGTTTAAGCG‑ACAACCGATGCCCGATGCGACGCTGGCGCGTCTTATAGGGCCTACaaa > 2:4842164/1‑150 (MQ=255) cTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAAATTTTCC‑ATATAAAGGCCCAGTACGCCTGGACGGATAAAGCGTTTAAGCG‑ACAACGGATTCCCGATGCGACGCTGGCGCGTCTTATAGGGCCAACaaa > 2:2393863/1‑150 (MQ=255) cTTTATCGGCGCGCAATATTTTATCTATTGGTTGAGAAAGCAGTGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACaaa < 1:3795281/150‑1 (MQ=255) tATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑AAAAAAAGGCCCAGTAAGCCGGGTCGGAAAAAGACTTTACGCG‑CCAAACGATTCCCGAATCGACCCAGTCGCGTCTTATACGGCCaaaaaaaag > 2:516285/1‑147 (MQ=255) cgcCATATTTTATCTATTTGTTGATAAAGCTGCGCTGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTCCGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAAt < 1:1735430/150‑1 (MQ=39) atatTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTa < 1:2287539/150‑1 (MQ=255) tatTTTATCTATTTGTTTAGAATGCAGAGCCTTTAATTTTTCA‑ATATAACGGCCCTGTACGCCTGGACGTATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAg < 1:173270/150‑1 (MQ=39) tatTTTATCTATTTGTTGTGAAAGCAGCGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACACCGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAg < 1:2160237/150‑1 (MQ=255) cTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATCACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATa < 1:3118909/150‑1 (MQ=255) cTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATa < 2:3187471/150‑1 (MQ=255) cTATTTGTTGAGAAAGCAGAGCAGTTAATTTTTCC‑ATATCACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATa < 1:249581/150‑1 (MQ=255) tttGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAgg < 2:2881104/150‑1 (MQ=255) tttGTTGAGAAAGCAGAGCCGTGAAATTTTAC‑ATATAAACGCCCAGTAAGCCGGGACGGATAAAGCCTTTACGCG‑ACAACCGATTCCCCATGCGCCGCAGGCGCGGCTTATCGGGCCAACAAAAGGCCCCCAAACGTAGGTCGGAGAAgg > 2:534436/1‑150 (MQ=255) ttgttgCCAAAGCAGACCCTTTATTTTTCCC‑ATATACCGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGc < 1:894112/150‑1 (MQ=39) tgttgAGAAAGCAGAGCCGTTAATTTTTAC‑ATATAAAGGCCCAGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAAAGGATTCCCCATGCGACGCTGGCGCGTCTTATAGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCg > 2:4374506/1‑150 (MQ=255) tgttgAGAAAGCAGAGCCGTTAAATTTTAC‑CAAAAACCGCCCCGTACCCCGGGCCCGCTAAAGCGTTTACGCC‑ACCACCGATGCCCCCTGCGCCCCGGGCGCCTCGTATCGGGCCAACAAACCGCCCCCACACGGAGGGCGGAGAAGGCg > 2:1797339/1‑150 (MQ=255) gttgAGAAAGCAGAGCCGTTAAATTTTAC‑AAAAAAAGGCCCAGTACGCCGGGACGGAAAAAGCGTTTAAGCC‑ACAAACGAAGCCCGAATCGACGCTTGCGCGTCATATCGGGCCTAAAAACCGCCCCCCATAGGAGGTCGGATAAGTCGt > 2:3082612/1‑150 (MQ=255) ttgAGAAAGCAGAGCCGTTAATTTTTAC‑AAATAAAAGCCCAGGAAGCCGGGACGGGTAAAGAGTTTAAGCG‑ACAAACGATTCCCGAAGCGACGCAGGCGCGTCTTATACGGCCAACAAACCGCCCCCAAACGTAGGGCGGATAAGGCGtt > 2:453271/1‑150 (MQ=255) tgAGAAAGCAGAGCCGTTAATTTTGCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACACCGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTc < 2:2130704/150‑1 (MQ=255) agaAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCAc < 2:852683/150‑1 (MQ=255) agagCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCAt < 2:3359233/150‑1 (MQ=255) agCCTTTATTTTTACA‑ATAAAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCTATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATcc < 1:3276124/150‑1 (MQ=38) cGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGAc > 2:4486423/1‑150 (MQ=255) ttAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACaa > 1:4611589/1‑150 (MQ=255) ttAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGAAGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACaa < 2:197288/150‑1 (MQ=255) tgaaTTGTTCC‑CTATCCCGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACaa < 2:3977342/148‑1 (MQ=255) taTTTTTCCAAAATCACGGCCCTGTACGCCTGGACGGATAAAGCTTTTACGCG‑ACAACGGATGCCCGTTGCGACGCGGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACaaa < 1:416561/149‑1 (MQ=38) aTTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAAcc > 1:2765470/1‑150 (MQ=255) aTTTTGAC‑ATATAACGGCCCTGTACGCCTGGACGTATAATGCTTTTACGCG‑ACAACGGTTGCCCGATGCGACGCTGGCGCGTCTTATCGGGCATACAAACGGCCCCGAATCGTAGGTCGGATAAGGCTTTCACGCCGCATCCGACAAAcc < 1:1037364/150‑1 (MQ=38) tttCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATg < 2:3961974/150‑1 (MQ=255) tttCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGATCACGCCGCATCCGACAAACCATg > 2:3561816/1‑150 (MQ=255) cc‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTg < 2:2231793/150‑1 (MQ=255) c‑ATATAACGGCCCTGTACGCCTGGACGGATACAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTgg > 2:3447592/1‑150 (MQ=255) c‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTgg < 2:2740479/150‑1 (MQ=255) c‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTgg > 2:1915995/1‑150 (MQ=255) c‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTgg > 2:1136383/1‑150 (MQ=255) c‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTgg > 2:1003052/1‑150 (MQ=255) atatAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGa > 1:2007176/1‑150 (MQ=255) tataACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGAt > 2:1725209/1‑150 (MQ=255) | CTGGTGGGTGGTTTACTGCTGGTGTTCGCTGACTGGTGTGGGCGGATGGTGCTGTTTCCATTCCAGATCCCGGCGGGGCTGCTGTCAACCTTTATCGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCC‑ATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCG‑ACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGAT > CP009273/169791‑170089 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |