Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,577,878 T→C 16.0% intergenic (+209/‑241) yrhA → / → yrhB pseudogene, interrupted by IS1E/stable heat shock chaperone

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,577,8780TC16.0% 274.8 / 43.3 106intergenic (+209/‑241)yrhA/yrhBpseudogene, interrupted by IS1E/stable heat shock chaperone
Reads supporting (aligned to +/- strand):  ref base T (47/42);  new base C (9/8);  total (56/50)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.14e-01

Only 100 of 119 total aligned reads displayed.

GAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCATTTA  >  CP009273/3577729‑3578027
                                                                                                                                                     |                                                                                                                                                     
  aaaTTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGattcat                                                                                                                                                     >  2:3419169/1‑150 (MQ=255)
  aaaTTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGattcat                                                                                                                                                     >  2:3419247/1‑150 (MQ=255)
    aTTCCTTGTTCTAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGatttattt                                                                                                                                                   <  1:1280909/150‑1 (MQ=255)
    aTTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGTAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGatttattt                                                                                                                                                   <  1:1278478/150‑1 (MQ=255)
    aTTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTACTGGCTATGATGATTTTAATGACATGTTGatttattt                                                                                                                                                   >  2:703482/1‑150 (MQ=255)
    aTTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGatttattt                                                                                                                                                   <  1:1278743/150‑1 (MQ=255)
    aTTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGatttattt                                                                                                                                                   >  2:705042/1‑150 (MQ=255)
    aTTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGatttattt                                                                                                                                                   >  2:522887/1‑150 (MQ=255)
     ttCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGAtttattta                                                                                                                                                  >  1:2503258/1‑150 (MQ=255)
      tCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAg                                                                                                                                                 <  2:4091220/150‑1 (MQ=255)
      tCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAg                                                                                                                                                 <  1:558265/150‑1 (MQ=255)
      tCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAg                                                                                                                                                 <  1:558230/150‑1 (MQ=255)
         ttGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAAt                                                                                                                                              <  2:2762788/150‑1 (MQ=255)
            ttCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTCATTTAGAAtttt                                                                                                                                           >  2:1458430/1‑150 (MQ=255)
            ttCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTCATTTAGAAtttt                                                                                                                                           >  2:3918458/1‑150 (MQ=255)
             tCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTa                                                                                                                                          >  1:4742911/1‑150 (MQ=255)
                  aTTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGa                                                                                                                                     >  1:427462/1‑150 (MQ=255)
                   tttAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGaa                                                                                                                                    >  1:3989148/1‑150 (MQ=255)
                    ttAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAAt                                                                                                                                   <  1:705400/150‑1 (MQ=255)
                    ttAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAAt                                                                                                                                   <  1:703877/150‑1 (MQ=255)
                     tAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATc                                                                                                                                  >  1:185831/1‑150 (MQ=255)
                     tAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATc                                                                                                                                  >  1:185819/1‑150 (MQ=255)
                        cAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATa                                                                                                                               >  1:2038978/1‑150 (MQ=255)
                         aGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATaa                                                                                                                              >  1:2524048/1‑150 (MQ=255)
                         aGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATaa                                                                                                                              <  1:3089984/150‑1 (MQ=255)
                            gCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGAt                                                                                                                           >  2:4316874/1‑150 (MQ=255)
                               aGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCt                                                                                                                        >  2:4500993/1‑150 (MQ=255)
                               aGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCt                                                                                                                        >  2:4501104/1‑150 (MQ=255)
                                   aTGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGata                                                                                                                    >  2:753104/1‑150 (MQ=255)
                                       aaaaaCTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCtt                                                                                                                >  1:2526888/1‑150 (MQ=255)
                                        aaaaCTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTa                                                                                                               >  1:200726/1‑150 (MQ=255)
                                        aaaaCTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTATCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTa                                                                                                               <  1:532899/150‑1 (MQ=255)
                                                  aCGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGaaaa                                                                                                     <  1:2196620/150‑1 (MQ=255)
                                                    ggAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATc                                                                                                   >  1:4270405/1‑150 (MQ=255)
                                                     gAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTCATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATcc                                                                                                  >  1:772171/1‑150 (MQ=255)
                                                      aaCTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATccc                                                                                                 <  2:3627586/150‑1 (MQ=255)
                                                      aaCTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTCATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATccc                                                                                                 >  2:3019609/1‑150 (MQ=255)
                                                         tACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGtt                                                                                              <  2:6880/150‑1 (MQ=255)
                                                           cacTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCg                                                                                            >  1:1633500/1‑150 (MQ=255)
                                                           cacTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCg                                                                                            >  1:1634919/1‑150 (MQ=255)
                                                           cacTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCg                                                                                            >  1:4751424/1‑150 (MQ=255)
                                                             cTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGAc                                                                                          <  1:388135/150‑1 (MQ=255)
                                                                 ttAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTc                                                                                      >  2:1144048/1‑150 (MQ=255)
                                                                     gTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGTCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGaa                                                                                  >  2:1470227/1‑150 (MQ=255)
                                                                        agaTGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGaaaaa                                                                               <  1:496243/150‑1 (MQ=255)
                                                                        agaTGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGaaaaa                                                                               >  1:4673089/1‑150 (MQ=255)
                                                                          aTGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGa                                                                             <  2:1419764/150‑1 (MQ=255)
                                                                          aTGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGa                                                                             <  2:1978138/150‑1 (MQ=255)
                                                                          aTGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGa                                                                             <  2:1978052/150‑1 (MQ=255)
                                                                          aTGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGa                                                                             <  2:1978173/150‑1 (MQ=255)
                                                                                cGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCAt                                                                       >  2:279026/1‑150 (MQ=255)
                                                                                 gAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATa                                                                      >  2:4588205/1‑150 (MQ=255)
                                                                                 gAAGACATGTAGTCTCTATTATAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGAATTATTTAGAATATTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGaaaaaata                                                                      >  2:3858211/1‑145 (MQ=255)
                                                                                  aaGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATaa                                                                     <  2:4270405/150‑1 (MQ=255)
                                                                                  aaGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATaa                                                                     <  2:4267797/150‑1 (MQ=255)
                                                                                  aaGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATaa                                                                     >  2:875367/1‑150 (MQ=255)
                                                                                  aaGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATaa                                                                     >  2:4846628/1‑150 (MQ=255)
                                                                                   aGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTCATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATaaa                                                                    <  2:1436615/150‑1 (MQ=255)
                                                                                     aCATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATTACATTTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCACGTTAGACTTTCTGAAAAAGAAATCATAAAat                                                                  >  2:1435554/1‑150 (MQ=255)
                                                                                     aCATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAat                                                                  <  2:3525764/150‑1 (MQ=255)
                                                                                     aCATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAat                                                                  <  2:3525759/150‑1 (MQ=255)
                                                                                     aCATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAat                                                                  >  1:2441357/1‑150 (MQ=255)
                                                                                            gTCTCTATTTTAGCCGAAATAGCTAATGGATATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCa                                                           <  2:4505279/150‑1 (MQ=255)
                                                                                               tctATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGAt                                                        <  1:1609223/150‑1 (MQ=255)
                                                                                                ctATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTCATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATa                                                       <  1:4218314/150‑1 (MQ=255)
                                                                                                     ttAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTCATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTAt                                                  <  2:1220884/150‑1 (MQ=255)
                                                                                                      tAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTAtt                                                 >  1:36944/1‑150 (MQ=255)
                                                                                                      tAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTCATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTAtt                                                 <  1:4647333/150‑1 (MQ=255)
                                                                                                           gAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATAATTATTTCGTg                                            >  2:2883333/1‑150 (MQ=255)
                                                                                                             aaTAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGAc                                          <  2:4744110/150‑1 (MQ=255)
                                                                                                             aaTAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGAc                                          <  2:4744067/150‑1 (MQ=255)
                                                                                                                aGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACtat                                       <  2:4528775/150‑1 (MQ=255)
                                                                                                                  cTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTctat                                     >  1:1025587/1‑150 (MQ=255)
                                                                                                                   tAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATc                                    >  1:3668420/1‑150 (MQ=255)
                                                                                                                   tAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATc                                    >  1:3667297/1‑150 (MQ=255)
                                                                                                                   tAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATc                                    >  1:1120813/1‑150 (MQ=255)
                                                                                                                      tGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTa                                 >  1:2756923/1‑150 (MQ=255)
                                                                                                                          tATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCg                             >  2:568602/1‑150 (MQ=255)
                                                                                                                            tgatgaTTTTAATGACATGTTGATTCATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGAt                           <  2:2275209/150‑1 (MQ=255)
                                                                                                                             gatgatTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATg                          >  1:21202/1‑150 (MQ=255)
                                                                                                                                gatTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGaag                       >  2:3735998/1‑149 (MQ=255)
                                                                                                                                gatTTTAATGACATGTTGATTCATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAAc                       >  1:890557/1‑150 (MQ=255)
                                                                                                                                gatTTTAATGACATGTTGATTCATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAAc                       >  1:3984072/1‑150 (MQ=255)
                                                                                                                                   tttAATGACATGTTGATTCATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACttt                    <  1:1458430/150‑1 (MQ=255)
                                                                                                                                   tttAATGACATGTTGATTCATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACttt                    <  1:3918458/150‑1 (MQ=255)
                                                                                                                                     tAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACttttt                  <  2:185831/150‑1 (MQ=255)
                                                                                                                                     tAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACttttt                  <  2:185819/150‑1 (MQ=255)
                                                                                                                                      aaTGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACtttttt                 >  1:2469864/1‑150 (MQ=255)
                                                                                                                                          aCATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCaaa             <  2:3344530/150‑1 (MQ=255)
                                                                                                                                             tGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAAcc          >  1:1101737/1‑150 (MQ=255)
                                                                                                                                             tGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAAcc          >  1:1507199/1‑150 (MQ=255)
                                                                                                                                              gTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCa         <  2:2183182/150‑1 (MQ=255)
                                                                                                                                              gTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCa         <  1:753104/150‑1 (MQ=255)
                                                                                                                                              gTTGAATTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCa         <  2:427462/150‑1 (MQ=255)
                                                                                                                                                tGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAga       <  1:839872/150‑2 (MQ=255)
                                                                                                                                                tGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGc       >  2:3346608/1‑150 (MQ=255)
                                                                                                                                                 gATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCa      >  1:4391233/1‑150 (MQ=255)
                                                                                                                                                 gATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCa      >  1:4391944/1‑150 (MQ=255)
                                                                                                                                                    ttatttaGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCAttt   <  2:200726/150‑1 (MQ=255)
                                                                                                                                                     tatttaGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCATTta  <  1:4316874/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGACATGTTGATTTATTTAGAATTTTACCCGAATCATAAGATTCTGATATCTTAAATAAGAAAATCCCGTTCGACGTTCTGAAAAAGAAATCATAAAATATTAGCAGATACTTATTTCGTGACTATATCTTATCCGATGAACTTTTTTCAAAACCAGCATTTA  >  CP009273/3577729‑3578027

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: