| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,042,128 | A→C | 13.1% | K601N (AAA→AAC) | polA → | fused DNA polymerase I 5'‑>3' polymerase/3'‑>5' exonuclease/5'‑>3' exonuclease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,042,128 | 0 | A | C | 13.1% | 734.6 / 36.6 | 286 | K601N (AAA→AAC) | polA | fused DNA polymerase I 5'‑>3' polymerase/3'‑>5' exonuclease/5'‑>3' exonuclease |
| Reads supporting (aligned to +/- strand): ref base A (203/39); new base C (3/41); total (206/80) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.11e-23 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 294 total aligned reads displayed.
CTGCACAATCATTCTGAAGAGCTCACCCTTCGTCTGGCTGAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCGACCTACACCGACAAGCTGCCGCTGATGATCAACCCGA > CP009273/4041979‑4042276 | ctgcACAATCATTCTGAAGAGCTCACCCTTCGTCTGGCTGAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGACTTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGaaa > 2:853254/1‑150 (MQ=255)ctgcACAATCATTCTGAAGAGCTCACCCTTCGTCTGGCTGAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGaaa < 1:3821479/150‑1 (MQ=255) gcACAATCATTCTGAAGAGCTCACCCTTCGTCTGGCTGAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAAc > 1:4053669/1‑150 (MQ=255) acaATCATTCTGAAGAGCTCACCCTTCGTCTGGCTGAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGc > 2:2508332/1‑150 (MQ=255) aaTCATTCTGAAGAGCTCACCCTTCGTCTGGCTGAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCg > 2:3638349/1‑150 (MQ=255) aaTCATTCTGAAGAGCTCACCCTTCGTCTGGCTGAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCg > 1:3757564/1‑150 (MQ=255) aaTCATTCTGAAGAGCTCACCCTTCGTCTGGCTGAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTAAAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCg < 2:4221277/150‑1 (MQ=255) aTCATTCTGAAGAGCTCACCCTTCGTCTGGCTGAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCgg > 2:1448941/1‑150 (MQ=255) tCATTCTGAAGAGCTCACCCTTCGTCTGGCTGAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCggg > 1:11008/1‑150 (MQ=255) tCATTCTGAAGAGCTCACCCTTCGTATGGCTGAGCTGGAAAAGAAAGCGCATTAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTAAAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCggg < 2:271886/150‑1 (MQ=255) gAAGAGCTCACCCTTCGTCTGGCTGAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGgcgcg > 2:283518/1‑150 (MQ=255) agCTCACCCTTCGTCTGGCTGAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGt > 1:2540579/1‑150 (MQ=255) agCTCACCCTTCGTCTGGCTGAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGt > 1:453126/1‑150 (MQ=255) cTCACCCTTCGTCTGGCTGAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCa > 1:1277055/1‑150 (MQ=255) agacccgttCGTGGGGCTTCGCTGAAAAAGAATGGTCTTAATATTGCGTTTGAGCATTTCACCCTTTCTTCCACAAAGCATTTACAAACCTTTCTGTTTCAAAAACTGTGCA‑TTAACGGGGTCATAAAAACGCCGGGTGGCGCGCCGTCa < 2:4515806/143‑1 (MQ=255) tCACCCTTCGTCTGGCTGAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCaa > 1:4278563/1‑150 (MQ=255) aCCCTTCGTCTGGCTGAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACg > 2:2999648/1‑150 (MQ=255) aCCCTTCGTCTGGCTGAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACg > 2:396432/1‑150 (MQ=255) cccTGCGTCTGGCTTACCTGTAAAAGAACGCGCATGAAATGGACGGTGAGGAATTTAACATTACTTCCACAAAGCAGTAACAAACCTTTCTCTTTTAAAAACCGGGAA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGt < 2:649547/150‑1 (MQ=255) cTTCGTCTGGCTGAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAACACGCCGGGTGGCGCGCCGTCAACGTCg > 2:3474503/1‑150 (MQ=255) cTTCGTCTGGCTGAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCg > 2:1528156/1‑150 (MQ=255) cTTCGTCTGGCTGAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCCGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCg > 1:2421921/1‑150 (MQ=255) tGGCTGAGCTGGAAAAGAACGCGAATCAAATTGCAGTTGAGTATTTTAACCTTTCTTCCACCACGCATTTAAAAACCTTTCTATTTTAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAgg < 2:1721167/150‑1 (MQ=255) ggCTGAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGt > 1:2207248/1‑150 (MQ=255) ggCTGAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGt > 1:3523248/1‑150 (MQ=255) gCTGAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTa > 2:1153655/1‑150 (MQ=255) gAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTg > 1:2752074/1‑150 (MQ=255) tGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTTAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGgaag > 1:2045306/1‑150 (MQ=255) aaaaTAAAGCGAATGAAATTGCAGGTTAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACAATTCTCTTTTAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAAc < 2:4861371/150‑1 (MQ=255) aagaaagCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTg > 1:3417876/1‑150 (MQ=255) agaaagCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGACGAGGTACTGGAAGAACTgg > 1:294644/1‑150 (MQ=255) agaaagCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTgg > 1:2711704/1‑150 (MQ=255) gaaagCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGgc > 2:3450049/1‑150 (MQ=255) aaagCGCTTTAATTTGCTGGTGTGTATTTTAACCTTTCTTCCACAAAGCTGTTAAAAACAATTATCTTTTAAAAACCGGGCA‑TTAAACCGCTGAACAACACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGgcg < 1:3621811/150‑1 (MQ=255) agCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCt > 1:2851418/1‑150 (MQ=255) aTGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGACGAACTGGCGCTGGACt > 2:4730412/1‑150 (MQ=255) aTGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACt > 2:1090195/1‑150 (MQ=255) tGAATTTGCTGGTGAGTAATTTAACATTTCTTCCACCAATCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTTAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTa < 2:1946059/150‑1 (MQ=255) tGAAATTGCAGGTGAGTAATTTAACCTTTCTTCAACCATGCTGTTACAAACCATTCACTTTGAAAAACCGGGCT‑TTAAACCGCTTAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTa < 2:2421923/150‑1 (MQ=255) aaaTTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATc > 1:3136520/1‑150 (MQ=255) aaaTTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATc > 1:165139/1‑150 (MQ=255) tttGCTGGTGCGGAATTTACCCTTTCTTCCACCACGCAGTTAAAACCCATTCTCTTTGAAAAACCGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCg < 2:1824441/149‑1 (MQ=255) ttGAGTAATTAAACCTTTCTACCACCAAGCTTTAAAAAACAATACTATTTTAAAAACCGGCAA‑TTAAACCGCTCAACAACACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCaa < 1:3513423/149‑1 (MQ=255) gTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCaa > 2:122426/1‑150 (MQ=255) tgtattttAACTTTTCTTCCACCAAGCTGTTACAAACCTTTCTTTTTTAAAAACCGGGCA‑TTAAACCGCTGAACAACACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAg < 1:389034/145‑1 (MQ=255) ttaaTTTAACATTTGTCCCACAAAGCTGTAAAAAACAATTCTATTTTAAAAACAGGTCA‑TTAACCCGCTTAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGt < 1:4397222/148‑1 (MQ=255) tgattttAACCTTTCTACCACAACGATTTAACAAACCATTATTTTTTAAAAAGCGGGAA‑TTAACCCGGTGAAGAACACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGt < 1:3001026/146‑1 (MQ=255) gtaaTTAAACCTTTCTCCCACCAAGAATTAAAAAACCATTATATTTTAAAAACTGGCCA‑TAAACCCGCTGAACAACACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGt < 1:4395713/148‑1 (MQ=255) ggAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGt > 2:2255804/1‑150 (MQ=255) ttAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCCAAAGTGATTc > 1:73348/1‑150 (MQ=255) tAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCt > 2:4314073/1‑150 (MQ=255) tcttcCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTCTCCGTTGCCAAAAGTGATTCTGGAGTAt > 2:3104294/1‑150 (MQ=255) tcttcCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGGGTAt > 1:3711616/1‑150 (MQ=255) tctacCACAAAGCAGTTAAAAACCATTCTCTTTGAAAAACTGGCCA‑TTACCCCGCTGAAGAACACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTAt < 1:1141156/150‑1 (MQ=255) cttcCACCACGCTTTTACAAACCTTTCTCTTTTAAAAACAGGGCA‑TTAAACCGCTGAAGAACACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATc < 2:2996155/150‑1 (MQ=255) ttcCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCg > 1:3636746/1‑150 (MQ=255) tcCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGt > 2:720814/1‑150 (MQ=255) ccaccaAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTg > 1:3276387/1‑150 (MQ=255) caccaAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTgg > 2:962779/1‑150 (MQ=255) caAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTACACCGCTGAAGAACACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCt < 1:3643540/150‑1 (MQ=255) caAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCt > 1:3064036/1‑150 (MQ=255) aGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTgg > 2:4768510/1‑150 (MQ=255) gCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTCCTGGAAGAACTGGCGCTGGACTATCCGTAGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGc > 2:4355241/1‑150 (MQ=255) cAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCg > 2:1573425/1‑150 (MQ=255) ttttACAACCAATTATATTTGAAAAACCGGCCA‑TTAACCCGCTTACTAACACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGa < 1:4778964/148‑1 (MQ=255) aGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGa > 1:3703848/1‑150 (MQ=255) gTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGac > 2:4009932/1‑149 (MQ=255) gTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGaa > 2:4010009/1‑150 (MQ=255) gTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGaa > 2:828524/1‑150 (MQ=255) ttACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAg > 1:1917371/1‑150 (MQ=255) aaaCCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGa > 2:1036122/1‑150 (MQ=255) aaCCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTTGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGaa > 2:2165375/1‑150 (MQ=255) aaCCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGaa > 1:4868905/1‑150 (MQ=255) aaCCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCAGTTGCCAAAAGTGA‑TCTGGAGAATCGAGGTCTGGCGAAGCTGaaa > 2:762771/1‑150 (MQ=255) caaTTCTATTTTAAAAACAGGGCA‑TTAACCCGCTTAAGAACACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAAt < 1:3590898/148‑1 (MQ=255) aTTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCg > 2:3553565/1‑150 (MQ=255) aTTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCg > 1:290965/1‑150 (MQ=255) aTTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCg > 1:431419/1‑150 (MQ=255) tctttttAAAAACCTGGCATTTAACCCGCTAAACAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCGAc < 1:3375162/147‑1 (MQ=255) ctTTTAAAAACTGGGAA‑TTACCCGGATTAAGACAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCGACCTa < 1:4686973/150‑1 (MQ=255) ctTTAAAAAACAGGCCA‑TAAACCCGCTTAACAACACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCGACCTa < 1:1007699/150‑1 (MQ=255) tGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCGACCTacac > 1:3933409/1‑150 (MQ=255) aaaaaCAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCGACCTACACCg > 2:3607286/1‑150 (MQ=255) aaaCAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCGACCTACACCGAc > 1:199215/1‑150 (MQ=255) aaCAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCGACCTACACCGACa > 2:1274896/1‑150 (MQ=255) aaCAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCGACCTACACCGACa > 1:62157/1‑150 (MQ=255) aCAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCGACCTACACCGACaa > 1:4108354/1‑150 (MQ=255) aCAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCGACCTACACCGACaa > 2:4641736/1‑150 (MQ=255) aCAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCGACCTACACCGACaa > 1:3384479/1‑150 (MQ=255) tAACCCGCTCAACAACACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCGACCTACACCGACAAGCTGCCGCt < 1:1348160/150‑1 (MQ=255) aaaCCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCGACCTACACCGACAAGCTGCCGCtg > 2:237287/1‑150 (MQ=255) aaaCCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCGACCTACACCGACAAGCTGCCGCtg > 2:324164/1‑150 (MQ=255) cTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCGACCTACACCGACAAGCTGCCGCTGATGATc > 1:4259792/1‑150 (MQ=255) tGAAGAACACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCGACCTACACCGACAAGCTGCCGCTGATGATCa < 2:1800821/150‑1 (MQ=255) aagaaCACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCGACCTACACCGACAAGCTGCCGCTGATGATCAAc < 1:1859656/150‑1 (MQ=255) aagaaAACGCCGGGTGGCGCGCCGTCAACGTCGGACGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCGACCTACACCGACAAGCTGCCGCTGATGATCAAc > 2:3326605/1‑150 (MQ=255) gaaAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCGACCTACACCGACAAGCTGCCGCTGATGATCAAccc < 2:4278563/150‑1 (MQ=255) gaaAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCGACCTACACCGACAAGCTGCCGCTGATGATCAAccc < 2:376500/150‑1 (MQ=255) aaaaCGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCGACCTACACCGACAAGCTGCCGCTGATGATCAACCCg > 1:4713438/1‑150 (MQ=255) aaaaCGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCGACCTACACCGACAAGCTGCCGCTGATGATCAACCCg > 1:3191622/1‑150 (MQ=255) | CTGCACAATCATTCTGAAGAGCTCACCCTTCGTCTGGCTGAGCTGGAAAAGAAAGCGCATGAAATTGCAGGTGAGGAATTTAACCTTTCTTCCACCAAGCAGTTACAAACCATTCTCTTTGAAAAACAGGGCA‑TTAAACCGCTGAAGAAAACGCCGGGTGGCGCGCCGTCAACGTCGGAAGAGGTACTGGAAGAACTGGCGCTGGACTATCCGTTGCCAAAAGTGATTCTGGAGTATCGTGGTCTGGCGAAGCTGAAATCGACCTACACCGACAAGCTGCCGCTGATGATCAACCCGA > CP009273/4041979‑4042276 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |