Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 4,294,402 C→T 16.8% intergenic (‑182/+27) ytcA ← / ← yjcS putative inner membrane DUF1656 family protein; efflux pump associated/metallo‑beta‑lactamase superfamily protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092734,294,4020CT16.8% 464.9 / 76.4 178intergenic (‑182/+27)ytcA/yjcSputative inner membrane DUF1656 family protein; efflux pump associated/metallo‑beta‑lactamase superfamily protein
Reads supporting (aligned to +/- strand):  ref base C (89/59);  new base T (18/12);  total (107/71)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 182 total aligned reads displayed.

GTAGTGAATATCAATATCCATTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTACCAGATCCGCCATTTT  >  CP009273/4294255‑4294551
                                                                                                                                                   |                                                                                                                                                     
gTAGTGAATATCAATATCCATTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGttt                                                                                                                                                     <  1:4342583/150‑1 (MQ=255)
 tAGTGAATATCAATATCCATTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTc                                                                                                                                                    >  1:726071/1‑150 (MQ=255)
      aatatcaatatcCATTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAgcgc                                                                                                                                               >  1:3457519/1‑150 (MQ=255)
         atcaatatcCATTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGcccc                                                                                                                                            <  1:3742482/150‑1 (MQ=255)
         atcaatatcCATTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGcccc                                                                                                                                            <  1:1279635/150‑1 (MQ=255)
         atcaatatcCATTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGcccc                                                                                                                                            <  1:1280259/150‑1 (MQ=255)
          tcaatatcCATTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGccccc                                                                                                                                           <  1:2835544/150‑1 (MQ=255)
                   aTTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAg                                                                                                                                  <  2:4840258/150‑1 (MQ=255)
                     tGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGTTTCAGCGCCCCCAAAAGCGAGTg                                                                                                                                >  2:508626/1‑150 (MQ=255)
                     tGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGTTTCAGCGCCCCCAAAAGCGAGTg                                                                                                                                >  2:508585/1‑150 (MQ=255)
                       aaGGCGTAAGTATGGATATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGAATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGAc                                                                                                                              <  1:2951021/150‑1 (MQ=255)
                             tCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAAt                                                                                                                        <  2:2716549/150‑1 (MQ=255)
                             tCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAAt                                                                                                                        <  1:489905/150‑1 (MQ=255)
                              cAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGTTTCAGCGCCCCCAAAAGCGAGTGACATTAAtt                                                                                                                       <  2:321173/150‑1 (MQ=255)
                              cAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAAtt                                                                                                                       <  1:3368864/150‑1 (MQ=255)
                                    ggCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGTTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGt                                                                                                                 <  1:4104996/150‑1 (MQ=255)
                                    ggCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGt                                                                                                                 >  1:3015412/1‑150 (MQ=255)
                                        aTTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACg                                                                                                             <  1:3817506/150‑1 (MQ=255)
                                        aTTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACg                                                                                                             <  1:3817650/150‑1 (MQ=255)
                                          tttCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGat                                                                                                           >  2:2054937/1‑150 (MQ=255)
                                          tttCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGat                                                                                                           <  1:1382341/150‑1 (MQ=255)
                                               tgatgaATAAAAATAGCTTTATTCAGCCACCTCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGTTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCa                                                                                                      <  2:3552595/150‑1 (MQ=255)
                                                   gaATAAAAATAGCTTTATTCAGCCACCGCATTCATAAATTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCca                                                                                                  <  2:1644503/150‑1 (MQ=255)
                                                    aaTAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCcac                                                                                                 <  2:1373910/150‑1 (MQ=255)
                                                    aaTAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCcac                                                                                                 >  2:309846/1‑150 (MQ=255)
                                                     aTAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCcaca                                                                                                >  2:3499999/1‑150 (MQ=255)
                                                       aaaaaTAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGTTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACaaa                                                                                              >  1:44213/1‑150 (MQ=255)
                                                       aaaaaTAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGTTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACaaa                                                                                              <  1:3354621/150‑1 (MQ=255)
                                                       aaaaaTAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGTTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACaaa                                                                                              >  2:2818986/1‑150 (MQ=255)
                                                        aaaaTAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAAt                                                                                             >  1:4068083/1‑150 (MQ=255)
                                                        aaaaTAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAAt                                                                                             >  2:385027/1‑150 (MQ=255)
                                                        aaaaTAGCTTTATTCAGCCACCGCATTAATAAATTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAAt                                                                                             <  1:4503127/150‑1 (MQ=255)
                                                         aaaTAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATc                                                                                            <  1:1045714/150‑1 (MQ=255)
                                                            tAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGaa                                                                                         <  1:1783931/150‑1 (MQ=255)
                                                              gCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAAt                                                                                       <  2:2991134/150‑1 (MQ=255)
                                                              gCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAAt                                                                                       >  1:4620891/1‑150 (MQ=255)
                                                               cTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAAtt                                                                                      >  2:946324/1‑150 (MQ=255)
                                                                tttATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTa                                                                                     >  1:3408766/1‑150 (MQ=255)
                                                                 ttATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTAt                                                                                    <  1:4391399/150‑1 (MQ=255)
                                                                 ttATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTGACGATAGTCACCCACAAATCGAAAttct                                                                                    >  2:1482460/1‑148 (MQ=255)
                                                                        gCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACa                                                                             >  2:1998683/1‑150 (MQ=255)
                                                                            ccGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCg                                                                         <  2:841915/150‑1 (MQ=255)
                                                                              gCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGTGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGAt                                                                       >  2:654872/1‑150 (MQ=255)
                                                                              gCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGAt                                                                       <  2:3284003/150‑1 (MQ=255)
                                                                              gCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGAt                                                                       <  2:3283840/150‑1 (MQ=255)
                                                                              gCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGAt                                                                       >  1:4034769/1‑150 (MQ=255)
                                                                               cATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATa                                                                      <  1:2327051/150‑1 (MQ=255)
                                                                                 ttCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAAt                                                                    >  1:59302/1‑150 (MQ=255)
                                                                                 ttCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAAt                                                                    >  1:2208223/1‑150 (MQ=255)
                                                                                    aTAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATttc                                                                 >  2:2486130/1‑150 (MQ=255)
                                                                                    aTAACTTAAATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTAACCCACAAATCGAAATTATACAGACAGGCGATAATttc                                                                 >  1:4023311/1‑150 (MQ=255)
                                                                                     tAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGTTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATACACCCACAAATCGAAATTATCCAGACAGGCGATAATttct                                                                >  1:1691051/1‑150 (MQ=255)
                                                                                     tAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATttct                                                                <  2:1704637/150‑1 (MQ=255)
                                                                                     tAACTTATATAGTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATttct                                                                <  2:1263979/150‑1 (MQ=255)
                                                                                        cTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTcc                                                             >  1:2774570/1‑150 (MQ=255)
                                                                                         ttATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCa                                                            >  1:2498307/1‑150 (MQ=255)
                                                                                          tatataTTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGTTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAg                                                           >  2:4422293/1‑150 (MQ=255)
                                                                                            tatatTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGtt                                                         <  1:1495053/150‑1 (MQ=255)
                                                                                             atatTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGttt                                                        >  2:2297720/1‑150 (MQ=255)
                                                                                              tattttatttATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGTTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTc                                                       >  2:4741678/1‑150 (MQ=255)
                                                                                                ttttatttATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTcgc                                                     >  2:1143698/1‑150 (MQ=255)
                                                                                                  ttatttatTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCgcgc                                                   >  1:4520675/1‑150 (MQ=255)
                                                                                                  ttatttatTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCgcgc                                                   >  1:4695252/1‑150 (MQ=255)
                                                                                                   tatttcttAATTGGCTGTATATATTTTGAAAATAAATACTTTTGGGGGCTGCAGCGCCCCCAAAGGCGAGGGCCATTAAGTTGGGGTTACGTTCTTCACCCCCAAATCGAAGGTATCCGGTCCGGCGATTCTTTCTTCCGGGTGcgcggc                                                  >  2:4275711/1‑148 (MQ=255)
                                                                                                      ttattaATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCAtt                                               >  2:354572/1‑150 (MQ=255)
                                                                                                       tattaATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGTTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTg                                              <  1:809136/150‑1 (MQ=255)
                                                                                                       tattaATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGTTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTg                                              <  1:3598518/150‑1 (MQ=255)
                                                                                                       tattaATTGGCTGTATATATTTGTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGGGACATTAATTTGGGGGTACGATATTCACCCACACATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTGTCGCGCCATTg                                              >  2:2342750/1‑150 (MQ=255)
                                                                                                         ttaATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGcc                                            <  2:2821029/150‑1 (MQ=255)
                                                                                                         ttaATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGcc                                            <  2:391240/150‑1 (MQ=255)
                                                                                                           aaTTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCaa                                          >  1:2098606/1‑150 (MQ=255)
                                                                                                             ttGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCaata                                        >  2:4634288/1‑150 (MQ=255)
                                                                                                                gCTGTATATATTTTTAAAATAAATACTTTTGGGGGTTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAAtt                                     >  2:4079315/1‑150 (MQ=255)
                                                                                                                 cTGTATATATTTTTAAAATAAATACTTTTGGGGGTTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAAttt                                    <  1:4159105/150‑1 (MQ=255)
                                                                                                                 cTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAAttt                                    >  1:49758/1‑150 (MQ=255)
                                                                                                                 cTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAAttt                                    >  1:485408/1‑150 (MQ=255)
                                                                                                                  tGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAAtttt                                   <  2:531639/150‑1 (MQ=255)
                                                                                                                   gTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTGCCAGTTTCGCGCCATTGCCAATAATTTTg                                  >  2:4831610/1‑150 (MQ=255)
                                                                                                                   gTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGAAATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCAGAGCCAATAATTTTg                                  >  2:2382205/1‑150 (MQ=255)
                                                                                                                             ttAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCg                        <  1:4736774/150‑1 (MQ=255)
                                                                                                                               aaaaTAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCt                      <  1:2649309/150‑1 (MQ=255)
                                                                                                                                  ataaataCTTTTGGGGGTTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCtttt                   >  1:3702594/1‑150 (MQ=255)
                                                                                                                                  ataaataCTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCtttt                   >  1:1084136/1‑150 (MQ=255)
                                                                                                                                  ataaataCTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCtttt                   >  2:1412732/1‑150 (MQ=255)
                                                                                                                                  ataaataCTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAAGTTTGGCTTTCTTCGCtttt                   >  2:4665796/1‑150 (MQ=255)
                                                                                                                                    aaataCTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTAc                 >  1:2046367/1‑150 (MQ=255)
                                                                                                                                     aataCTTTTGGGGGTTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTAcc                >  1:3666382/1‑150 (MQ=255)
                                                                                                                                     aataCTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTAcc                <  1:309846/150‑1 (MQ=255)
                                                                                                                                     aataCTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTAcc                >  1:2968381/1‑150 (MQ=255)
                                                                                                                                        aCTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTACCAGa             <  1:3718196/150‑1 (MQ=255)
                                                                                                                                        aCTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTACCAGa             >  1:2025024/1‑150 (MQ=255)
                                                                                                                                         cTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTACCAGAt            >  1:1471204/1‑150 (MQ=255)
                                                                                                                                         cTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTACCAGAt            >  1:1337663/1‑150 (MQ=255)
                                                                                                                                            ttGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTACCAGATCCg         >  1:2506982/1‑150 (MQ=255)
                                                                                                                                             tGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCCATAATTTTGGCTTTCTTCGCTTTTACCAGATCCGc        >  2:3621425/1‑150 (MQ=255)
                                                                                                                                             tGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTACCAGATCCGc        >  2:3621717/1‑150 (MQ=255)
                                                                                                                                               ggggCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTACCAGATCCGCCa      <  1:1207472/150‑1 (MQ=255)
                                                                                                                                                 ggCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTACCAGATCCGCCAtt    <  1:654872/150‑1 (MQ=255)
                                                                                                                                                  gCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTACCAGATCCGCCAttt   <  1:2751569/150‑1 (MQ=255)
                                                                                                                                                   cTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTACCAGATCCGCCAtttt  >  1:3778561/1‑150 (MQ=255)
                                                                                                                                                   |                                                                                                                                                     
GTAGTGAATATCAATATCCATTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTACCAGATCCGCCATTTT  >  CP009273/4294255‑4294551

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: