Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | ACB122 | 4,667,099 | 0 | G | T | 25.4% | 95.4 / 10.3 | 63 | L161L (CTC→CTA) | chrR | Quinone reductase |
Reads supporting (aligned to +/- strand): ref base G (24/23); new base T (16/0); total (40/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.04e-04 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
GCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACACCAGCGACTGGCGCACCGCATGGTTGGCGCCAAAGCCACCAATCGCCCCCG > ACB122/4666971‑4667232 | ggggaaaaaCCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTACACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGcc < 6:230742/131‑1 (MQ=255) ccGATCCTACACAGGGGCGTTTCACTCCAGGAATAGTGGTTCAGACCGCCCTGTTCATCTTCACCCATGACGCAAACCTGTCGACATACGCCTTCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGTATCCTCg < 2:324195/137‑1 (MQ=255) tACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGc > 5:218605/1‑137 (MQ=255) acaGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTcg < 8:350633/137‑1 (MQ=255) acaGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTcg < 1:46787/137‑1 (MQ=255) acaGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTcg < 6:357081/137‑1 (MQ=255) ggCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAACCTCGCCGCa > 2:256144/1‑137 (MQ=255) cGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCACCTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTTCCCGAATCCTCGCACAAGCTCGCAGCAcc > 8:121633/1‑137 (MQ=255) cGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTTCCCGAATCCTCGACCAAGCTCGCCGcccc > 2:219011/1‑137 (MQ=255) cGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCAcc > 4:317820/1‑137 (MQ=255) cGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCAcc > 4:280922/1‑137 (MQ=255) cGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCAcc > 4:354164/1‑137 (MQ=255) cGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCAcc < 3:205861/137‑1 (MQ=255) cGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCAcc < 8:411024/137‑1 (MQ=255) cGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCGTGTGATTTAGCTTGCCCGAATCCTCGCACAAGCTCGCCGcccc > 5:330401/1‑137 (MQ=255) cGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGGCTTGTGATTGAGCTTGCCCGAATGCGAGAACAATCTCGCCGcccc > 4:350678/1‑137 (MQ=255) cGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGAAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTAGCCCCAcc > 8:223649/1‑137 (MQ=255) ttGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGATCTTGACCGAATACTCGAACAAGATCTCCGCACCGc > 6:79459/1‑137 (MQ=255) ttGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGACATTGACCGAAACCACGAAAAACCACGCCCCACCGc > 1:415115/1‑137 (MQ=255) tGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTTAGCTTGGCCGAATCCTCGAACAAGCTCGCCGCACCGcc > 5:379276/1‑137 (MQ=255) gCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTTAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGccc > 4:387741/1‑136 (MQ=255) cacaGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTGGTGTCATTGAGCTTGCACGAATACTCGAACAACCAAGCCGCACCGCCaa > 2:180970/1‑137 (MQ=255) cacaGCAGGATTAGGGGTGCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCaa < 1:279058/137‑1 (MQ=255) cagGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTaa < 6:246464/137‑1 (MQ=255) gATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTTAGCTTGCCCGAATACTCTAACAATCTAGCCGCACCGCCAAGGTGAGcc > 1:405387/1‑137 (MQ=255) gATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGcc > 2:269056/1‑137 (MQ=255) gATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGcc > 2:141591/1‑137 (MQ=255) gATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCAATGCTCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGAAAGcc > 8:207630/1‑137 (MQ=255) ttAGGGGTTCAGACCGGCCTGTTCAACTTCACCCATGACGAAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGATCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTc < 5:443953/137‑1 (MQ=255) ggggTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCggg < 1:256144/137‑1 (MQ=255) gTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTAATTTAGCTTGGCCGAATACTCGAAAAATCAAGCCGCACCGCCAATGGAAGCCTCGGGcct > 3:423206/1‑135 (MQ=255) tCAGACCGCCCTGTTCAACTTCACCCATGATGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTTAGCTTGCCCGAATACTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCt > 8:434746/1‑137 (MQ=255) gACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCGTTTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAACCCGCGGGCATAtgca > 3:234941/1‑137 (MQ=255) gACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGGCTTGTGATTTAGCTTTGCCGCAAACGCGCACAAACTCGCCGCCCCCCCAAGGTTAGCCGCGGGCCTCtgcg > 1:212445/1‑136 (MQ=255) aCCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTGTTGTCATTTAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCCCCGCCAATGTAAGCCTCGGGCATCtgcaa > 2:181239/1‑136 (MQ=255) aCCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCtgcat > 8:368524/1‑137 (MQ=255) tGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGc > 8:424543/1‑137 (MQ=255) tGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATACTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGc > 5:449935/1‑137 (MQ=255) aaCTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTTAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTc > 4:117662/1‑137 (MQ=255) aaCTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATACTCGAACAAGCACGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTc > 3:418373/1‑137 (MQ=255) cACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTTAGCTTGCCCGAATACTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGaa > 3:294274/1‑137 (MQ=255) cACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCa > 5:314261/1‑113 (MQ=255) cACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCa < 6:314261/113‑1 (MQ=255) aTGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTTAGCTTTCCCGAATCCTAGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACAcc > 5:118424/1‑137 (MQ=255) aTGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTTAGCTTGCCCGAATCCTCGCACCACCGAGCCGCACCCCCAAGGTAAGCCTCGGGCAACAGCAAGCAGGGCATGTCGAGAAACAcc > 6:19927/1‑137 (MQ=255) aTGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTTAGCTTGCCCGAATCCTAGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACAcc > 6:274494/1‑137 (MQ=255) aTGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACAcc < 1:117039/137‑1 (MQ=255) aTGACGCAAACCTGTCGACAAACGCCTGCAAGAACGCTCGCGTGTTGTCATTTATCTTGCCAGAAACCTAGAACCATCTCCCCCCAACGACCAGGTAAGCAGAGCGCATCTGCAAGCACGCCCTGTCCAGAAacaaa > 4:228153/1‑135 (MQ=255) aCGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTTAGCTTTCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACACCAGc > 4:164665/1‑137 (MQ=255) gCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCCAGGTAAGCCACGGGCATCTGCATGCAGGGCATGTCGAGCAACACCAGCgc > 2:128483/1‑136 (MQ=255) aaCCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACACCAGCGACTg < 2:78538/137‑1 (MQ=255) aaCCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACACCAGCGACTg < 5:415990/137‑1 (MQ=255) gTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACACCAGCGACTGGCGCa < 1:219011/137‑1 (MQ=255) cGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACACCAGCGACTGGCGCAcc < 6:330401/137‑1 (MQ=255) cGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACACCAGCGACTGGCGCAcc < 7:368524/137‑1 (MQ=255) aCAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTTAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACACCAGCTCCTGGCCCCCCGc > 7:435036/1‑137 (MQ=255) gcgTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACACCAGCGACTGGCGCACCGCATGGTTGGCGCCAAAGccacca > 7:136340/1‑137 (MQ=255) cgtggtGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCCCCGCCAAGGTAAGCCTCGGGCATATGCATGCAGGGCATGTCGAGAAACACCCCCGACTGGCGCACCGCATGGTTTGCGCCAAAGCCACCaa > 2:440589/6‑137 (MQ=255) ttGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACACCAGCGACTGGCGCACCGCATGGTTGGCGCCAAAGCCACCAATCGc < 3:164665/137‑1 (MQ=255) ttGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACACCAGCGACTGGCGCACCGCATGGTTGGCGCCAAAGCCACCAATCGc < 7:207630/137‑1 (MQ=255) ttGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACACCAGCGACTGGCGCACCGCATGGTTGGCGCCAAAGCCACCAATCGc < 3:354164/137‑1 (MQ=255) aTTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACACCAGCGACTGGCGCACCGCATGGTTGGCGCCAAAGCCACCAATCGCCCCCg < 3:317820/137‑1 (MQ=255) aTTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACACCAGCGACTGGCGCACCGCATGGTTGGCGCCAAAGCCACCAATCGCCCCCg < 3:350678/137‑1 (MQ=255) | GCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCGCACCGCCAAGGTAAGCCTCGGGCATCTGCATGCAGGGCATGTCGAGAAACACCAGCGACTGGCGCACCGCATGGTTGGCGCCAAAGCCACCAATCGCCCCCG > ACB122/4666971‑4667232 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |