| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | ACB122 | 4,963,801 | Δ8,879 bp | 100% | [CJ019_04659]–[flgG] | [CJ019_04659], fabH, CJ019_04661, CJ019_04662, CJ019_04663, flgI, flgH, [flgG] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | ACB122 | 4963801 | 4972679 | 8879 | 39 [0] | [0] 39 | [CJ019_04659]–[flgG] | [CJ019_04659],fabH,CJ019_04661,CJ019_04662,CJ019_04663,flgI,flgH,[flgG] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB122 | = 4963800 | 0 (0.000) | 34 (1.200) | 20/230 | NT | 100% | coding (408/2064 nt) | CJ019_04659 | hypothetical protein |
| ? | ACB122 | 4972680 = | 0 (0.000) | coding (707/786 nt) | flgG | Flagellar basal‑body rod protein FlgG | |||||
CCGGCAACGCTGGCTTCGTTGTAGTTGCCCTTCATCGAGGTAGCGCTGACATCTTTCATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > ACB122/4963669‑4963800‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaGTGGTGATCATGTTCACCAGCTCTTCCACGGTACTGACGTTGGAGTTCTCCAGCGTCTGCTGCAAGGTGGTGCCAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGAAC > ACB122/4972680‑4972814 CCGGCAACGCTGGCTTCGTTGTAGTTGCCCTTCATCGAGGTAGCGCTGACATCTTTCATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGG > 8:30589/1‑136 tGCAACGCTGGCTTAGTTCTAGTTGCCCTTCATCGAGGTAGCGCTGACATCTTTCATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCGGGAAGCTGCAGCCGGAGAACGTGCCATCGAGCAGAGTGGT > 6:12181/2‑135 GGCAACGCTGGCTTCGTTGTAGTTGCCCTTCATCGAGGTAGCGCTTACATCTTTCATGCCAAACGTAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAATCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTG < 7:129955/136‑1 GGCAACGCTGGCTTCGTTGTAGTTGCCCTTCATCGAGGTAGCGCTGACATCTTTCATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGACGGTGCCATCGAGCAGAGTGGT > 4:20511/1‑135 GGCTTCGTTGTAGTTGCCCTTCATCGAGGTAGCGCTGACATCTTTCATTCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTC < 2:38814/136‑1 GCTTCGTTGTAGTTGCCCTTCATCGAGGTAGCGCTGACATCTTTCATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTT < 7:30589/134‑1 GTTGTAGTTGCCCTTCATCGAGGTAGCGCTGACATCTTTCATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAG < 8:122028/135‑1 GTTGTAGTTGCCCTTCATCGAGGTAGCGCTGACATCTTTCATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAG < 3:176815/135‑1 TAGTTGCCCTTCATCGAGGTAGCGCTGACATCTTTCATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAGCTCTT < 3:190231/136‑1 TAGTTGCCCTTCATCGAGGTAGCGCTGACATCTTTCATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAGCTCTT > 2:24076/1‑136 TAGTTGCCCTTCATCGAGGTAGCGCTGACATCTTTCATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAGCTCT > 4:138081/1‑135 TAGTTGCCCTTAATCGAGGTAGCGCTGACATCTTTAATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAGCTCTT < 8:43234/136‑1 CTTCATCGAGGTAGCGCTGACATCTTTCATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCCTCGAGCAGAGTGGTGATCATGTTCACCACCTCATACACGGTA > 4:158549/1‑136 CTTCATCGAGGTAGCGCTGACATCTTTCATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGA < 4:122719/110‑1 CTTCATCGAGGTAGCGCTGACATCTTTCATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGA > 3:122719/1‑110 CTTCATCGAGGTAGCGCTGACATCTTTCATGCCAAACGAAATGCTTTCGTTGGAGTTAGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAGCTCTTCCACCGT > 8:7263/1‑135 CTGACATCTTACATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAGCACTTCCACGGTACTTACGTTTGAGTTC > 4:7654/1‑135 TGACATCTTTCATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCACCCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAGCTCATCCACGGTAATGACGTTTTAGTTCT > 5:5339/1‑135 agCTTTCATGCCAAACGAAATGCTTTCGGTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAGCGCTTCCACGGTACTGACGTTGGAGTTCTCCAGC < 4:122240/134‑1 ATCTTTCATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAGCTCTTCCACGGTACTGACGTTGGAGTTCTCCAGC < 8:94491/136‑1 TCTTTCATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAGCTCTTCCACGGTACTGACGTTGGAGTTCTCCAGCG > 8:147825/1‑136 TCTTTCATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAGCTCTT > 4:195205/1‑106 TCTTTCATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAGCTCTT < 3:195205/106‑1 CAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAGCTCTTCCACGGTACTGACGTTGGAGTTCTCCAGCGTCTGCTGCAA < 1:24076/136‑1 CAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAGCTCTTCCACGGTACTGACGTTGGAGTTCTCCAGCGTCTGCTGCAA < 6:94544/136‑1 CAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAGCTCTTCCACGGTACTGACGTTGGAGTTCTCCAGCGTCTGCTGCAA < 3:203603/136‑1 CAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAGCTCTTCCACGGTACTGACGTTGGAGTTCTCCAGCGTCTGCTGCAA < 3:138081/136‑1 GAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAGCTCTTCCACGGTACTGACGTTGGAGTTCTCCAGCGTCTGCTGCAAGGTGG > 4:58535/1‑136 GAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAGCTCTTCCACGGTACTGACGTTGGAGTTCTCCAGCGTCTGCTGCAAGGTGG > 4:55628/1‑136 GTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAGCTCTTCCACGGTACTGACGTTGGAGTTCTCCAGCGTCTGCTGCAAGGTGGTGCCAAAACC < 7:147825/135‑1 GTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAGCTCTTCCACGGTACTGACGTTGGAGTTCTCCAGCGTCTGCTGCAAGGTGGTGCCAAAACC < 8:30142/135‑1 TTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAGCTCTTCCACGGTACTGACGTTGGAGTTCTCCAGCGTCTGCTGCAAGGTGGTGCCAAAACCGg > 7:195154/1‑135 TTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTAACCACCTCTTCCACGGTACTGACGTTGGAGTTCTCAACCGTCTGCGGCAAGGTGGTGACAAAACCct > 5:51552/1‑134 TTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAGCTCTTCCACGGTACTGACGTTGGAGTTCTCCAGCGTCTGCTGCAAGGTGGTGCCAAAACCGTTCAGGC < 6:24217/136‑1 GCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGAGTGGTGATCATGTTCACCAGCTCTTCCACGGTACTGACGTTGGAGTTCTCCAGCGTCTGCTGCAAGGTGGTGCCAAAACCGTTCAGGCCTGGG < 1:102853/136‑1 GCCGGAGAATGTGCCTTCGAGCAGAGTGGTGATCATGTTCTGCAGCTCTTCCACGGTTCTGACGTTGGAGTTCTCCAGCGTCTGCTGCAAGGTGGTGCCAAATCCGTTCTGGCCTGGGGTGCCGACCTGAGGCTCG < 6:5339/136‑1 CATCGAGCAGAGTGGTGATCATGTTCACCAGCTCTTCCCCGGTACTGACGTTGGAGTTCTCCAGCGTCTGCGGCAAGGTGGTGCCAACACCGGTCAGGCCTGGGGTGCCGCCCTGAGGCGCGCCACTGGCGGCGGg > 5:92451/1‑135 AGTGGTGATCGTGTTCACCCGCTCTTGCCCGGTACTGACGTTGGAGTTCTCCAGCGTCTGCTGCAAGGTGGGGGCCAAACCGTTCAGGCCTGGGGTGCCGCCCGGAGGCGCGCCACTGGCGGCGGGCTCGAGGCAC > 6:56889/1‑136 AGTGGTGATCATGTTCCCCAGCTCTTCCACGGTACTGACGTTGGAGTTCTCCAGCGTCTGCTGCAAGGTGGTGCCAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGAA > 8:20757/1‑135 CCGGCAACGCTGGCTTCGTTGTAGTTGCCCTTCATCGAGGTAGCGCTGACATCTTTCATGCCAAACGAAATGCTTTCGTTGGAGTTCGCGCCAACCTGGAAGCTGCTGCCGGAGAAGGTGCCATCGAGCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > ACB122/4963669‑4963800‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaGTGGTGATCATGTTCACCAGCTCTTCCACGGTACTGACGTTGGAGTTCTCCAGCGTCTGCTGCAAGGTGGTGCCAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGAAC > ACB122/4972680‑4972814 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |