Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	ACB122	4543545	4543719	175	19 [16]	[17] 20	[rutR_2]	[rutR_2]

TTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAACCAAAGTCAGCATAGTGCTGGGTAGACGCCCAGATCATAT  >  ACB122/4543607‑4543852                                                                                                                  |                                                                                                                                     ttGCCGCGATACAGCCATCGAGGGGCCGCTTCGCGGCCCGCTCGCGGCACAAGGCCGCTCCCCCAAAAAGACCCCCTCCACCTGGCATGCCCGATCACGGCTCCCCCCCGCTCCCCCGCAAGATCACGCTGGTCa                                                                                                                 >  8:105816/1‑135 (MQ=255)        gATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCGCCCACAAAAAGACCACGTCCACCAGGAATTCCGGATAACGGCTCCCGCCCGATCCCCCGCAACCTCCCCCAGGTCCCCGTcgg                                                                                                          >  6:272664/1‑133 (MQ=37)                       gggCCGCTTCGCGGCCCGCTCGCGACACAAGGCCGCTCCCAAAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCCGCCCGATCCCCCGCAAGATCACGCTGGTCACCCTCTGCCCCGCATTCTCGaa                                                                                           >  8:319950/1‑135 (MQ=39)                       gggCCGCTTCGCGGCCCGATAGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGaa                                                                                           >  8:67302/1‑135 (MQ=255)                              ggcggggCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATg                                                                                    <  5:272664/130‑1 (MQ=255)                                           cgcgACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCt                                                                       >  5:1218/1‑135 (MQ=255)                                                        cGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAACAAAAGGGTGGTCACCGACTGCCCCGAATTCGCGAAGGCCATGACAGACAGCACCGCGCCCCCGTTGAg                                                          >  4:215883/1‑135 (MQ=255)                                                             ccACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATc                                                                                                                           >  4:222927/1‑65 (MQ=255)                                                             ccACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATc                                                                                                                           <  3:222927/65‑1 (MQ=255)                                                             ccACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTg                                                                                                                     >  2:376723/1‑71 (MQ=255)                                                             ccACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTg                                                                                                                     <  1:376723/71‑1 (MQ=255)                                                                              ccACCTGTAATGCCGGATCACGGCTCCAGCCCGCTCCCCCGCAAGATCCCGCTGGTCACCGTCTGCACCGCAGTCGGCACGGCCCTGTAAGACAGCACCTCGCCGGCGTGGAGCTCCTGACCATGGTAACCAAAg                                    >  8:147545/1‑135 (MQ=255)                                                                               cACCTGTAATCGCGGATCACGGCTCCAGCCGGTTCCCGCGGAAGATGAGGCTGGTGTCCGTCTGCACCGCATTCTCGAAGGCGATGTGAGTCAGCTCCTCGCCGCCGTTGAGCAACTGAACCTGGTAACCat                                      <  4:63373/132‑2 (MQ=255)                                                                                 ccTGGAATGCCGGCTCACGGCTCCAGCCCTATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAACCAAAGTCa                                 <  3:35893/135‑1 (MQ=255)                                                                                 ccTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAACCAAAGTCa                                 <  7:105816/135‑1 (MQ=255)                                                                                    ggAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAACCAAAGTCAGc                               >  1:17456/1‑134 (MQ=255)                                                                                                    gCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAACCAAAGTCAGCATAGTGCTGGGTAGACg              <  3:100208/135‑1 (MQ=255)                                                                                                                  ccccGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCCACTGAACCTGGTAACCAAAGTCAGCAGAGTGCTGGGTAGACGCCCAGATCatat  >  2:125159/1‑133 (MQ=255)                                                                                                                  ccccGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAACCAAAGTCAGCATAGTGCTGGGTAGACGCCCAGATCatat  >  5:283693/1‑133 (MQ=255)                                                                                                                  ccccGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAACCAAAGTCAGCATAGTGCTGGGTAGACGCCCAGATCatat  >  5:380919/1‑133 (MQ=255)                                                                                                                  |                                                                                                                                     TTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCACGCTGGTCACCGTCTGCACCGCATTCTCGAAGGCCATGTCAGACAGCACCTCGCCGCCGTTGAGCAACTGAACCTGGTAACCAAAGTCAGCATAGTGCTGGGTAGACGCCCAGATCATAT  >  ACB122/4543607‑4543852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑