| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | ACB122 | 4933622 | 4982636 | 49015 | 71 [0] | [4] 54 | [CJ019_04628]–[ycaD_3] | [CJ019_04628],aar,CJ019_04630,iscS_3,ddl_2,CJ019_04633,flhB,fliR,fliQ,fliP,CJ019_04638,fliN,fliM,CJ019_04641,CJ019_04642,CJ019_04643,cheB_4,CJ019_04645,fliJ,fliI,CJ019_04648,fliG,fliF,fliE,atoC_3,atoS,norR_4,CJ019_04655,fliS,fliD,CJ019_04658,CJ019_04659,fabH,CJ019_04661,CJ019_04662,CJ019_04663,flgI,flgH,flgG,flgF,CJ019_04668,flgE,flgD,flgC,flgB,cheR2,cheV_3,CJ019_04675,CJ019_04676,CJ019_04677,ycgR,[ycaD_3] |
AAGGGCGATGGATCGCTGACTTCCCACGCATCGATAACACACTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCATGACCTCACATATATTCAGCGATACTGGGCCTGGGTGTATCTATGATTGTAATTTTTGCAGTGAACGCCGCAGCATTGCCGGAAACATCCAGGACATACAAGGCGCCCCACGACGACTCTACAATCAACTCAACG > ACB122/4933485‑4933757 | aaGGGCGATGGATCGCTGACTTCCCACGCATCGATAACACACTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGgcgc < 3:31177/137‑1 (MQ=255) gCGATGGATCGCTGACTTCCCACGCATCGATAACACACTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatgg > 4:206104‑M2/1‑133 (MQ=255) tGGATCGCTGACTTCCCACGCATCGATAACACACTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGAGGTTTTCGAGGGGCGCatggggtc < 6:153656‑M2/137‑9 (MQ=255) tGGATCGCTGACTTCCCACGCATCGATAACACACTTGTAAGTGATGGCGTAACTCTGAAGCGCGAAGAATTAGCGTCAGTTGTCGGTACATTTGGGTTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtc < 6:54265‑M2/137‑9 (MQ=255) gACTTCCCACGCATCGATAACACACTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgaga < 5:199975‑M2/137‑18 (MQ=255) aTCGATAACACACTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaat > 3:57107‑M2/1‑108 (MQ=255) cGATAACACACTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGGCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaatta > 7:239998‑M2/1‑106 (MQ=255) cccacttGTAAGTGATGGAGTACCTCTGAAGCTCGACGAATTACCCTCAGTGGTCGCTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataagtcaaaaattagtacat > 8:336670‑M2/3‑100 (MQ=255) cacacTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGTGGGGCGCatggggtcatgccgagataaggcaaaaattaggacat > 2:12587‑M2/1‑100 (MQ=255) cacacTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacat > 4:48685‑M2/1‑100 (MQ=255) cacacTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACAGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacat > 6:36315‑M2/1‑100 (MQ=255) aacactTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacat > 7:189716‑M2/2‑100 (MQ=255) cTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgt > 1:8412‑M2/1‑96 (MQ=255) aaGTTATGGCGTACATTTGAAGCGCGAAGAATTACCCTGAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctct > 1:330844‑M2/1‑91 (MQ=255) tGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaag > 4:111662‑M2/1‑88 (MQ=255) gATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGGTGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagc < 4:15523‑M2/137‑51 (MQ=255) gCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctatt < 5:285135‑M2/137‑55 (MQ=255) gCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctatt < 5:137126‑M2/137‑55 (MQ=255) cGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattt < 1:154707‑M2/137‑56 (MQ=255) cGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattg < 7:212366‑M2/137‑56 (MQ=255) cGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattg < 5:315352‑M2/137‑56 (MQ=255) cGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattg < 3:289850‑M2/137‑56 (MQ=255) cGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattg < 1:307693‑M2/137‑56 (MQ=255) cGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattg < 8:332065‑M2/137‑56 (MQ=255) cGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattg < 7:158926‑M2/137‑56 (MQ=255) cGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattg < 3:46534‑M2/137‑56 (MQ=255) ccTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatt > 5:154319‑M2/1‑78 (MQ=255) taagCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaac > 1:208295‑M2/2‑73 (MQ=255) gAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaac > 7:49042‑M2/1‑73 (MQ=255) aaGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacg > 6:315352‑M2/1‑72 (MQ=255) gcgcGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgag > 2:154707‑M2/1‑70 (MQ=255) cgcgACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagt < 5:283483‑M2/137‑69 (MQ=255) cgaATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagatt < 3:100419‑M2/137‑74 (MQ=255) cgaATTACCCTCAGTGGTCGATACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagatt < 4:19099‑M2/137‑74 (MQ=255) ccTCAGTGTTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGTCTGCatgcggtcatgccgagatatggcaaaaattaggacattggttctctaagccattgtatttaaacgagtagattagaagccg > 6:319900‑M2/1‑56 (MQ=255) ccTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccc > 7:314553‑M2/1‑56 (MQ=255) ccTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccc > 8:212366‑M2/1‑56 (MQ=255) gTGGTCGGTACATTTGGGGGCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctc > 8:329373‑M2/1‑51 (MQ=255) ggTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggttatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaac < 5:119563‑M2/113‑65 (MQ=255) ggTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggttatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaac > 6:119563‑M2/1‑49 (MQ=255) ggTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcag < 7:125629‑M2/137‑89 (MQ=255) ggTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcag < 5:128801‑M2/137‑89 (MQ=255) ggTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcag < 2:97220‑M2/137‑89 (MQ=255) ggTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacat < 8:155239‑M2/86‑38 (MQ=255) ggTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacat > 7:155239‑M2/1‑49 (MQ=255) gTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaag < 5:270783‑M2/137‑94 (MQ=255) gTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaag < 8:66264‑M2/137‑94 (MQ=255) tACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaaga < 3:186446‑M2/137‑95 (MQ=255) tGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgctt < 5:55817‑M2/137‑101 (MQ=255) gggTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcg < 1:246286‑M2/137‑103 (MQ=255) aCCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattagtacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgccc < 3:185247‑M2/137‑108 (MQ=255) aCCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgccc < 1:152388‑M2/137‑108 (MQ=255) aCCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaa > 1:138590‑M2/1‑30 (MQ=255) aCCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaa < 2:138590‑M2/107‑78 (MQ=255) aCCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaag < 7:95975‑M2/79‑50 (MQ=255) aCCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaag > 8:95975‑M2/1‑30 (MQ=255) aCCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaag < 5:83770‑M2/79‑50 (MQ=255) aCCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaag > 6:83770‑M2/1‑30 (MQ=255) aCCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattagga < 7:124835‑M2/64‑35 (MQ=255) aCCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattagga > 8:124835‑M2/1‑30 (MQ=255) tttGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttc < 2:149235‑M2/137‑117 (MQ=255) ttGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttca > 2:307693‑M2/1‑20 (MQ=255) ttGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttca > 6:283483‑M2/1‑20 (MQ=255) gTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccat > 4:100419‑M2/1‑15 (MQ=255) gTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcacaatcgcttcagccaa < 6:320907‑M2/137‑123 (MQ=255) gAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattg > 5:9431‑M2/1‑9 (MQ=255) gAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattg < 4:155477‑M2/137‑129 (MQ=255) gAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattg > 1:90495‑M2/1‑9 (MQ=255) gcgcatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgaggaa > 4:186446‑M2/1‑4 (MQ=255) gcgcatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgaggaa > 3:15523‑M2/1‑4 (MQ=255) catggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgaggaaggt > 8:121286‑M2/1‑1 (MQ=255) | AAGGGCGATGGATCGCTGACTTCCCACGCATCGATAACACACTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCATGACCTCACATATATTCAGCGATACTGGGCCTGGGTGTATCTATGATTGTAATTTTTGCAGTGAACGCCGCAGCATTGCCGGAAACATCCAGGACATACAAGGCGCCCCACGACGACTCTACAATCAACTCAACG > ACB122/4933485‑4933757 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |