| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | ACB122 | 4955866 | 4977755 | 21890 | 95 [0] | [1] 72 | [atoC_3]–flgB | [atoC_3],atoS,norR_4,CJ019_04655,fliS,fliD,CJ019_04658,CJ019_04659,fabH,CJ019_04661,CJ019_04662,CJ019_04663,flgI,flgH,flgG,flgF,CJ019_04668,flgE,flgD,flgC,flgB |
ACTGTCAGATTGATGCCAGAAAAGCGGCAAAGGCCTTCCGCCTGAGGTGACAAAAGCGGCAATTGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCA > ACB122/4977624‑4977877 | aCTGTCAGATTGATGCCAGAAAAGCGGCAAAGGCCTTCCGCCTGAGGTGACAAAAGCGGCAATTGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTaa < 5:178772/135‑1 (MQ=255) gcaaaagcatcatcatagacggctagccagacggtggatgaccagcaagactcggcctctcgattaaccttttaaatcatatatttacagatctaatgtcctaatttttgccttatctcggcataagccctaacc < 6:451876‑M2/5‑3 (MQ=255) gcaaaagcatcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAAc < 4:164299‑M2/5‑1 (MQ=255) gcaaaagcatcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAAc < 2:263242‑M2/5‑1 (MQ=255) aaagcatcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCg > 2:88326‑M2/128‑135 (MQ=255) aaagcatcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCg < 2:327105‑M2/8‑1 (MQ=255) catagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACggg > 4:271027‑M2/118‑135 (MQ=255) agacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAg < 1:170872‑M2/21‑1 (MQ=255) acggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCt > 6:103397‑M2/113‑135 (MQ=255) cggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTc < 5:326993‑M2/24‑1 (MQ=255) ggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCg > 4:108996‑M2/111‑135 (MQ=255) gccagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCg > 4:325986‑M2/110‑134 (MQ=255) ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAgg < 3:297796‑M2/30‑1 (MQ=255) ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAgg < 1:88326‑M2/30‑1 (MQ=255) ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGa > 2:122135‑M2/105‑135 (MQ=255) ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGa > 2:146545‑M2/105‑135 (MQ=255) ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGa > 1:301551‑M2/105‑135 (MQ=255) ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGa > 7:371850‑M2/105‑135 (MQ=255) ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGa > 6:12590‑M2/105‑135 (MQ=255) gacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACa < 7:207606‑M2/34‑1 (MQ=255) gacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcataaatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGCCAGGAACa > 2:210632‑M2/102‑135 (MQ=255) acggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGGTCCTACGGGGAGCTCGGCAGGAACAg < 2:283396‑M2/35‑1 (MQ=255) cggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGc < 8:403135‑M2/36‑1 (MQ=255) gtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCgg > 2:124841‑M2/98‑135 (MQ=255) atgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAg < 4:234252‑M2/42‑1 (MQ=255) gaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTaa > 3:22425‑M2/92‑94 (MQ=255) gaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTaa < 4:22425‑M2/3‑1 (MQ=255) agcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATa > 4:284182‑M2/88‑134 (MQ=255) agccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACaa > 2:349117‑M2/84‑133 (MQ=255) agccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACaa > 1:60811‑M2/84‑133 (MQ=255) ggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCg < 6:320369‑M2/58‑1 (MQ=255) cctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGc > 4:303927‑M2/76‑135 (MQ=255) cgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCAtc < 6:356424‑M2/63‑1 (MQ=255) gaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCAtctct > 6:88190‑M2/70‑135 (MQ=255) aataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCAtctct > 5:18414‑M2/69‑134 (MQ=255) ttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCg > 4:327814‑M2/62‑135 (MQ=255) ttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCg > 1:108983‑M2/62‑135 (MQ=255) ttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCg < 1:124841‑M2/74‑1 (MQ=255) ttttaaatataaaatttacacacggaatgtccaaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGTGAGCTCTGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCg < 2:245128‑M2/74‑1 (MQ=255) aatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAATCCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCAACTCTCGATACCGGCCtt > 4:72455‑M2/57‑135 (MQ=255) tatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCtt > 7:139543‑M2/50‑135 (MQ=255) aacgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCt > 1:82610‑M2/41‑135 (MQ=255) acgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTc < 6:302896‑M2/80‑1 (MQ=255) acgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTc > 5:302896‑M2/40‑119 (MQ=255) acgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTg > 6:168126‑M2/40‑135 (MQ=255) acgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTg > 3:289991‑M2/40‑135 (MQ=255) cgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTgg > 8:408590‑M2/39‑135 (MQ=255) cgaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTg > 3:256852‑M2/39‑134 (MQ=255) gaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACgggg > 3:424468‑M2/38‑56 (MQ=255) gaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACgggg < 4:424468‑M2/19‑1 (MQ=255) gaatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTg > 5:272616‑M2/38‑133 (MQ=255) gaatgtactaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGt < 3:250657‑M2/98‑1 (MQ=255) aatttactaatttttgcattatagaggcataaccacTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTa < 8:217092‑M2/99‑1 (MQ=255) aatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGTTGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTa < 6:67047‑M2/99‑1 (MQ=255) aatgtcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTa < 6:89770‑M2/99‑1 (MQ=255) tcctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGATCAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAgatg > 6:343440‑M2/33‑135 (MQ=255) cctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAgatga < 3:303927‑M2/104‑1 (MQ=255) cctaatttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAgatga < 4:62011‑M2/104‑1 (MQ=255) atttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATccc > 3:39506‑M2/28‑135 (MQ=255) tttttgccttatctcggcataaccccTAACCCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAACAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATcccc < 5:50753‑M2/109‑1 (MQ=255) tttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATcccc < 3:8557‑M2/109‑1 (MQ=255) tttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATcccc < 1:349117‑M2/109‑1 (MQ=255) tttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATcccc < 5:16804‑M2/109‑1 (MQ=255) ttttgccttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCg < 6:342262‑M2/110‑1 (MQ=255) cttatctcggcatacccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGctgc > 1:108896‑M2/20‑135 (MQ=255) cttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGctgc > 3:307209‑M2/20‑135 (MQ=255) cttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCAATACCGGCCTTCGTGCTTACtt > 5:115709‑M2/20‑109 (MQ=255) cttatctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCAATACCGGCCTTCGTGCTTACtt < 6:115709‑M2/90‑1 (MQ=255) tctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGctgcact < 6:18414‑M2/119‑1 (MQ=255) tctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGctgcact < 4:289991‑M2/119‑1 (MQ=255) tctcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGctgcact < 1:327531‑M2/119‑1 (MQ=255) tcggcataaccccTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGctgcactgca > 3:445292‑M2/14‑135 (MQ=255) | ACTGTCAGATTGATGCCAGAAAAGCGGCAAAGGCCTTCCGCCTGAGGTGACAAAAGCGGCAATTGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCA > ACB122/4977624‑4977877 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |