New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ACB122	3359610 =	42 (0.740)	50 (0.890)	36/256	0.3	70.6%	intergenic (+219/‑151)	pikAII_1/CJ019_03160	Narbonolide/10‑deoxymethynolide synthase PikA2,modules 3 and 4/Tn3 family transposase ISPa42
	?	ACB122	4967484 =	0 (0.000)					coding (29/1566 nt)	CJ019_04661	hypothetical protein

GCGAGGCAAAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  ACB122/3359744‑3359610 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCCGCCTTGATGATCTGCGACGACGCTGTGTAGTAGTGCTGGAACTTCACCAGGCTG  >  ACB122/4967484‑4967619                                                                                                                                                                                                                                                                                 GCGAGGCAAAAGCATCATCATAGTCGGCTAGCCAGACGGTGGATGACCAGCAAGCCACTGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTC                                                                                                                                        <  4:89975/137‑1         AAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCGCTCATAGAACT                                                                                                                                >  3:9249/1‑137         AAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACT                                                                                                                                <  4:304677/137‑1         AAAGCATCAGCATAGACGGCTAGACAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACT                                                                                                                                <  8:114178/137‑1             CATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGCGC                                                                                                                            >  6:180667/1‑137             CATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGC                                                                                                                            <  8:341915/137‑1                CAGCATAGACGGCTAGCCAGACGGTGGATTACCAGCAAGCCACTGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCGTTATCTCGGCATAACCCCTCATAGAACTGAGCAGT                                                                                                                         <  8:130684/137‑1                          GGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGC                                                                                                               <  4:314629/137‑1                          GGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGC                                                                                                               <  5:65758/137‑1                           GCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCA                                                                                                              >  5:312513/1‑137                               GCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCGGTTGAAATACGCACGGT                                                                                                          <  7:199755/137‑1                                CCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTC                                                                                                         >  2:48877/1‑137                                CCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTC                                                                                                         >  4:98835/1‑137                                CCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAG                                                                                                                                    >  6:143534/1‑110                                CCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAG                                                                                                                                    <  5:143534/110‑1                                  AGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACT                                                                                                                                >  2:85008/1‑112                                  AGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACT                                                                                                                                <  1:85008/112‑1                                   cACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGC                                                                                                      <  2:169545/136‑1                                           ATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTT                                                                                              <  3:98835/137‑1                                             GACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTAa                                                                                            >  5:251373/1‑136                                                CAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGG                                                                                         <  2:231399/137‑1                                                     AGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTT                                                                                    <  4:310575/137‑1                                                     AGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTT                                                                                    >  3:97257/1‑137                                                     AGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTT                                                                                    >  6:274453/1‑137                                                     AGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTT                                                                                    >  2:120559/1‑137                                                     AGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTT                                                                                              <  6:17508/127‑1                                                     AGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTT                                                                                              >  5:17508/1‑127                                                              CTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGT                                                                           >  8:342439/1‑137                                                               TCTCGAATAAACTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTG                                                                          <  5:301812/137‑1                                                                   GAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGA                                                                      >  8:76082/1‑137                                                                            TTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTT                                                             <  2:82184/137‑1                                                                            TTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACG                                                                                                                <  5:1849/86‑1                                                                            TTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACG                                                                                                                >  6:1849/1‑86                                                                                 ATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCC                                                        >  8:160468/1‑137                                                                                                 ACGAATTTCCTAA‑TTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCAGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAATGTTTCTTGCGCCGCCTTGATGATCTGCGA                                       <  5:170410/137‑1                                                                                                 ACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCCGCCTTGATGATCTGCG                                        <  1:205680/137‑1                                                                                                  CGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCA                                                                               >  7:190639/1‑97                                                                                                  CGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCA                                                                               <  8:190639/97‑1                                                                                                   GAATGTCCTAATTTTTTCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACACACGGTCCGCTACTCCTTACAGGGCGTTAATC                                                                                <  5:26477/95‑1                                                                                                   GAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCCGCCTTGATGATCTGCGAC                                      >  3:338721/1‑137                                                                                                   GAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCCGCCTTGATGATCTGCGAC                                      >  1:273127/1‑137                                                                                                   GAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCCGCCTTGATGATCTGCGAC                                      >  1:268735/1‑137                                                                                                   GAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACACACGGTCCGCTACTCCTTACAGGGCGTTAATC                                                                                >  6:26477/1‑95                                                                                                    AATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCCGCCTTGATGATCTGCGACG                                     <  6:312513/137‑1                                                                                                    AATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCCGCCTTGATGATCTGCGACG                                     <  7:342439/137‑1                                                                                                    AATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCCGCCTTGATGATCTGCGACG                                     <  3:276747/137‑1                                                                                                             ATTTTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGCCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCCGCCTTGATGATCTGCGACGACGCTGTGT                            >  7:333958/1‑137                                                                                                                TTTGCCTTATCTCGGCATAACCCCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGAGCCGCCTTGATGATCTGCGACGACGCTGTGTAGT                         >  3:148968/1‑137                                                                                                                   GCCTTATCTCGGCATAAACCATCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGAGTTAATCAGGGTGGAGAAGGTTTCTTGCGACGCCTTGATGATCTGCGACGACGCTGTGTAGTAGT                      <  3:276720/137‑1                                                                                                                     CTTATCTCGGCATAACCCCTCATAGACCTGAGCAGTTGAAATACGCACGGTCAGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCCGGCTTGATGATCTGCGACGACGCTGTGTAGTAGTGC                    >  5:263394/1‑137                                                                                                                                       CTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCCGCCTTGATGATCTGCGACGACGCTGTGTAGTAGTGCTGGAACTTCACCAGGCTG  >  3:115495/1‑137                                                                                                                                                                                                                                                                                 GCGAGGCAAAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  ACB122/3359744‑3359610 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCCGCCTTGATGATCTGCGACGACGCTGTGTAGTAGTGCTGGAACTTCACCAGGCTG  >  ACB122/4967484‑4967619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.