Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | ACB122 | 5,688,637 | 0 | A | C | 43.8% | 24.4 / 12.3 | 50 | S236R (AGC→CGC) | pyrC' | Dihydroorotase‑like protein |
Reads supporting (aligned to +/- strand): ref base A (8/19); new base C (6/15); total (14/36) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
AGGTGCCATGGCCAGCTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTG‑CTGGTGGAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGTTCTCCAGCCTGTACCACGTGCAGC > ACB122/5688513‑5688769 | cggTGCCATGGCCAGCTTCCTCGGCCTGCGGGGCATCCCGGAGAGCGCCGAAACCGGGGCCCGGGCGCGCAACCTGCGG‑CTGGGGTAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCCCCAGCGCCCGTGgcg < 8:236703/136‑1 (MQ=255) aGGTGCCATGGCCAGCTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTG‑CTGGTGGAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGTGgcg > 5:287333/1‑137 (MQ=255) ccATGGCCAGCTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTG‑CTGGTGGAACAGAGCGGCGGGCGGGCGCCCTTACGCCAGCTGACCCCCGCCCGAGgcg‑ccccg > 3:17209/1‑133 (MQ=255) ccAGCTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTG‑CTGGTGGAACAGAGCGGCGTGGGTGCGCACTTCAGCCAGCTCACCCGCGCCCGTGGCG‑CGCGGCTGATc > 4:273417/1‑137 (MQ=255) ccAGCTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTG‑CTGGTGGAACAGAGCGGCGTGCGTGCGCACGTCAGCCCCCTCACCCGCGCCCGTGGCG‑CGCGGCGGAta > 1:41949/1‑136 (MQ=255) ccAGCTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTG‑CTGGTGGAACAGAGCGGCGGGGGGGGGCCCTTCAGCCCGCACACCAGCGCCCCTGGCG‑CGCGGCGGAta > 3:342426/1‑136 (MQ=255) ccAGCGTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCTAAACCGTGGCCCTGGCGCGCAACCTGCGG‑CTGGTGTACCAGAGCGGCGTGCGTGCGCACTTCAGCCAGAACCCCAGCGCCCGGGCCG‑CGCGGCTGATc < 2:281977/137‑1 (MQ=255) cAGCTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTG‑CTGGTGGAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCCGCGCCCGTGGCG‑CGCGGCTGATCg < 6:331363/137‑1 (MQ=255) ccTCGGACTGCCGTGCATCCCGGAGAGGGCAGAAACGGTTGCCCGGGGGCTCAACTTGCTGAGTGGT‑GATCATAGCGCCGGGCGTGGGCAGTTCAGCGGGTGCACCCGCGCCCGTGGGG‑CGCGGCTGATCgcccagg < 8:352906/137‑1 (MQ=255) ccGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTG‑CTGGTGGAACAGAGCGGCGTGCGGGCGCGCTTGAGCCCCCTCACCCGCGCCCGTGGCG‑CGCGGGGGGTCGCCccggccccggccgg > 3:61194/1‑135 (MQ=255) ccGGCGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTG‑CTGGTGGAACAGAGCGGCGGGCGTGCGCACTTCACCCAGATCACCAGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGcc < 8:253947/137‑1 (MQ=255) cGGAGCGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTG‑CTGGTGCAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCg < 2:69346/137‑1 (MQ=255) agagCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTG‑CTGGTGGAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGTGGCG‑CGCGGCTGATCGCCCCGGCCCAGGCCTTGGGCCTGCCGGTa > 6:99744/1‑137 (MQ=255) cGAAACCGTGGCCCTGGCGCGCAACCTGCTG‑CTGGTGGAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCCGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAAccgccg < 2:88906/137‑1 (MQ=255) gAAACCGTGGCCCTGGCGCGCAACCTGCTG‑CTGGTGGAACAGAGCGGCGTGCGGGCGCACTTCAGCCCGATCACCCGCGCCCCTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCGTGGGCCTGCCGGTAAccgccgc > 5:321681/1‑136 (MQ=255) gcggggCCGTGGCGGGCACCATGGTG‑GGGGTGCAACAGTGGGGCGTGCGTGCGCAGTTCCGCCAGATCACCAGCGCCGGTGGGG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTa < 4:17209/133‑1 (MQ=255) ccGTGGCCCTGGCGCGCACCCTGCTG‑CTGGTGCAACAGAGCGGCGTGCGTGCGCACTTCAGCCATATCACCAGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTa < 8:283093/137‑1 (MQ=255) ccGTGGCCCTGGCGCGCAACCTGCTG‑CTGGTGGAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCCGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTa < 4:268183/137‑1 (MQ=255) ccGTGGCCCTGGCGCGCAACCTGCTG‑CTGGTGGAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTa < 5:340479/137‑1 (MQ=255) ccGTGGCCCTGGCGCGCAACCTGCTG‑CGGGTGGAACAGAGCGGGGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGGGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTa < 3:180781/137‑1 (MQ=255) ccGTGGCCCGGGCGCGCAACCGGCGG‑CTGGTGGAACAGAGCGGCGTGCGTGCGAACTTCAGCCAGATCACCCGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTa < 2:229509/137‑1 (MQ=255) ccGGGGCCCTGGCGCGAAACCTGCTG‑CTGGTGGACCAGAGCGGCGGGCGTGCGAACTTCAGCCAGATCCCCCGCGCCCGGGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTa < 7:232917/137‑1 (MQ=255) gggggCCCTGGCGCGCAACCTGCTG‑CTGGTGGAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAg < 7:294569/134‑1 (MQ=255) ccccTGGCGCGCAACCTGCTG‑CTGGTGGAACAGAGCGGCGGGCGTGCGCACTTCAGCCAGATCACCCGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCt < 6:134632/136‑1 (MQ=255) cccGGGCGCGCAACCTGCTG‑CTGGGGGAACAGAGCGGCGTGCGTGCGCAGTTCAGCCAGATCCCCAGCGCCGGGGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTg < 4:230016/137‑1 (MQ=255) cgcgcAACCTGCTG‑CTGGTGGAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAg < 8:85968/137‑1 (MQ=255) cgcgcAACCTGCTG‑CTGGTGGAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAg < 2:32246/137‑1 (MQ=255) cgcgcAACCTGCTG‑CTGGTGGAAAAGAGCGGCGTGCGTGCGCACTTCAGCCAGAGCACCAGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAg < 2:312494/137‑1 (MQ=255) cgcgcAACCTGCGG‑GTGGTGCAACCGCGCGGCGTGCGTGCGCAGTTCAGCCAGATCACCCCCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAg < 4:18175/137‑1 (MQ=255) cgcAACCTGCTG‑CTGGTGGAACAGAGCGGCGGGCGGGCGCACTTCAGCCAGATCACCAGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCt < 6:296531/137‑1 (MQ=255) ccTGCTG‑CTGGTGGAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCCGCGCCCCTGGCG‑CGCGGCGGATCCCCCCCGCCCCGGCCCTGGGCCTGCCGGTAACCCCCCAGGTACCGCTGTACCCGCTGATcc > 8:31920/1‑137 (MQ=255) ccTGCTG‑CTGGTGGAACAGAGCGGCGTGAGTGCGCAATTAAGCCAGCTAACCAGCGCCCGTTGCG‑CGCGGCTTAGAGCCCCGGCCCACGGCATGGGCCTGCCCGTTACCGCACATTTTGCGCGTGACCAACTGATcg > 8:372316/1‑136 (MQ=255) cggctg‑cggGTGGAACAGCGCGGCGGGCGTGCGCACTCCAGCCAGACCACCCGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCt < 2:334339/135‑1 (MQ=255) gtggtggAACAGCGGGGGGTGCGTGCGCACTTCAGCCAGATCACCCGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGa < 2:41949/136‑1 (MQ=255) ggcggcgGGCGGGCGCACTCCCGCCATACCCCCCGCGCCCG‑GGCGCCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTgcg < 6:255053/136‑1 (MQ=255) cgcgccgTGCGTGCGCACTTCACCCATAACACCCGCGCCCGTGCCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTgcg < 6:299556/136‑1 (MQ=255) gcggggTGCGTGCGCACTTCAGCCAGATCACCTGCGCCGGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTgcgc < 6:337672/137‑1 (MQ=255) gcggcgTGCGTGCGAACTTCAGCCAGATCACCCGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCGGTACCAGCTGATCCTCACGGACGAGTCGCTgcgc < 8:296921/137‑1 (MQ=255) ggtgcgtgcGCACTTCAGCCAGATCACCAGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGt < 3:186692/136‑1 (MQ=255) ggtgcgtgcGCACTTCACCCATAGCACCCGCGCCGGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGt < 1:99484/136‑1 (MQ=255) ggtgcgtgcCCACTTCCGCAAGATCACCAGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGt < 7:293840/136‑1 (MQ=255) ggtgcgggcGCACTTCCGCCAGATCACCAGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGt < 6:321681/136‑1 (MQ=255) ggggcgggcgCACTTCCGCCAGATCACCCGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGt < 1:97700/134‑1 (MQ=255) gggcgtgcgCAGTGCAGCACTATCACCTGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTTACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGtt < 1:329828/135‑1 (MQ=255) tgcgtgcgCACTTCAGCCAGATCACCAGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGTtc < 6:287333/137‑1 (MQ=255) gcgcACTTCAGCCAGATCACCAGCGCCCGTGGCG‑CGCGGCTGATAGCCCACGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTATCGCTGTACCAGCTTATACTCACGGACGAGTCGCTGCGCGAGTTATCCac > 5:242383/1‑136 (MQ=255) aCTTCAGCCAGATCACCAGCGCCCGTAGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGTTCTCCAGCCTg > 1:297169/1‑137 (MQ=255) gATCACCAGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAAccgccg < 6:170605/68‑1 (MQ=255) gATCACCAGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAAccgccg > 5:170605/1‑68 (MQ=255) cACCAGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGTTCTCCAGCCTGTACCACGTGCAgc > 1:54698/1‑137 (MQ=255) | AGGTGCCATGGCCAGCTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTG‑CTGGTGGAACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGTGGCG‑CGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGTTCTCCAGCCTGTACCACGTGCAGC > ACB122/5688513‑5688769 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |