Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | ACB143 | 5,829,075 | 0 | A | C | 32.3% | 94.3 / 12.7 | 62 | V88G (GTA→GGA) | ftsY | Signal recognition particle receptor FtsY |
Reads supporting (aligned to +/- strand): ref base A (35/7); new base C (0/20); total (35/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 9.65e-11 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
GCCTGCAAGGGCATGGACGCAACCGGCTGCGGGGCAGGTGCCACCAGCGGCTGGGATGCGACCGGCTCTGGCTCAGGCGCCTGCAACGGCTGCGACGCAACCGGTTCAGGGACGGGGGCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCAGATCCCTCGACCGGAGCGGCTGCAGACTGCTCGACA > ACB143/5828949‑5829209 | gccTGCAAGGGCATGGACGCAACCGGCTGCGGGGCAGGTGCCACCAGCGGCTGGGATGCGACCGGCTCTGGCTCAGGCGCCTGCAACGGCTGCGACGCAACCGGTTCAGGGACGGGGGCCTCGACTACCGGAGGCCg > 1:61681/1‑137 (MQ=255) gccTGCAAGGGCATGGACGCAACCGGCTGCGGGGCAGGTGCCACCAGCGGCTGGGATGCGACCGGCTCTGGCTCAGGCGCCTGCAACGGCTGCGACGCAACCGGTTCAGGGACGGGGGCCTCGACTACCGGAGGCCg > 4:265335/1‑137 (MQ=255) ccTGCAAGGGCATGGACGCAACCGGCTGCGGGGCAGGTGCCACCAGCGGCTGGGATGCGACCGGCTCTGGCTCAGGCGCCTGCAACGGCTGCGACGCAACCGGTTCAGGGACGGGGGCCTCGACTACCGGAGGCCgg > 5:148224/1‑137 (MQ=255) ccTGCAAGGGCATGGACGCAACCGGCTGCGGGGCAGGTGCCACCAGCGGCTGGGATGCGACCGGCTCTGGCTCAGGCGCCTGCAACGGCTGCGACGCAACCGGTTCAGGGACGGGGGCCTCGACTACCGGAGGCCgg > 2:97250/1‑137 (MQ=255) tGCAAGGGCATGGACGCAACCGGCTGCGGGGCAGGTGCCACCAGCGGCTGGGATGCGACCGGCTCTGGCTCAGGCTCCTGCAACGGCTGCGACGCAACCGGTTCAGGGACGGGGGCCTCGACTACCGGAGGCCgggg > 2:20858/1‑137 (MQ=255) tGCAAGGGCATGGACGCAACCGGCTGCGGGGCAGGTGCCACCAGCGGCTGGGATGCGACCGGCTCTGGCTCAGGCGCCTGCAACGGCTGCGACGCAACCGGTTCAGGGACGGGGGCCTCGACTACCGGAGGCCgggg > 4:154232/1‑137 (MQ=255) gggCATGGACGCAACCGGCTGCGGGGAAGGTGCCACCAGCGGCTGGGATGCGACCGGCTCTGGCTCAGGCGCCTGCAACGGCTGCGACGCAACCGGTTCAGGGACTGTGGCCTCGACTACCGGAGGCCGGGGGGGTg > 7:258423/1‑137 (MQ=255) aCGCAACCGGCTGCGGGGCAGGTGCCACCAGCGGCTGGGATGCGACCGGCTCTGGCTCAGGCGCCTGCAACGGCTGCGACGCAACCGGTTCAGGGACGGGGGCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGAcc > 5:129789/1‑137 (MQ=255) aCGCAACCGGCTGCGGGGCAGGTGCCACCAGCGGCTGGGATGCGACCGGCTCTGGCTCAGGCGCCTGCAACGGCTGCGACGCAACCGGTTCAGGGACGGGGGCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGAcc > 6:230047/1‑137 (MQ=255) aCGCAACCGGCTGCGGGGCAGGTGCCACCAGCGGCTGGGATGCGACAGGCTATGTCTCAGGAGCCTGCAACGGCTGCGACGCAACAGGATCAGTGAAGGGTGCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGAcc > 3:295718/1‑137 (MQ=255) gCAACCGGCTGCGGGGCAGGTGCCACCAGCGGCTGGGATGCGACCGGCTCTGGCTCAGGCGCCTGCAACGGCTGCGACGCAACCGGTTCAGGGACGGGGGCCTCGACTACCGGAGGCCGCGGGGGTGCGGCGACCgg > 7:157916/1‑137 (MQ=255) ccGGCTGGGGGGCAGGTGCCACCAGCGGCTGGGCTGCGCCCGGCTCGGGCACAGGCGCCGGCACCGGCGGCCACGCAACCGGTTCCGGGCCGGGGGCCTCGACTCCCGGAGGCCGGGGGGGTGCGGCGACCGGCTGc < 3:195465/137‑1 (MQ=255) cGGCTGCGGGGCAGGTGCCACCAGCGGCTGGGATGCGACCGGCTCTGGCTCAGGCGCCTGCAACGGCTGCGACGCAACCGGTTCAGGGACGGGGGCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCg > 7:158440/1‑137 (MQ=255) cGGCTGCGGGGCAGGTGCCACCAGCGGCTGGGATGCGACCGGCTCTGGCTCAGGCGCCTGCAACGGCTGCGACGCAACCGGTTCAGGGACGGGGGCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCg > 7:54423/1‑137 (MQ=255) cGGCTGCGGGGCAGGTGCCACCAGCGGCTGGGATGCGACCGGCTCTGGCTCAGGCGCCTGCAACGGCTGCGACGCAACCGGTTCAGGGACGGGGGCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCg > 3:34026/1‑137 (MQ=255) cGGCTGCGGGGCAGGTGCCACCAGCGGCTGGGATGCGACCGGCTCTGGCTCAGGCGCCTGCAACGGCTGCGACGCAACCGGTTCAGGGACGGGGGCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCg > 6:249771/1‑137 (MQ=255) tgatgggCAGGTGACACCAGGGGCTGGGATGCTACCGTCTCTGGCTCCCGCTCCTGCAACGGCTGCGACGCCACCGGTTAAGGGACGGGGGCCTCGACTACCTGAGTCCTGTGGGGTGCGGCTACCGGCTGCGGCTc < 6:114550/133‑1 (MQ=255) gCGGGGCTGGTGCCACCCGCGGCTGGGAGGCGCCCGGCGCTGGCCCAGGCGCCGGCAACGGCGGCGACGCACCCGGGTCCGGGCCGGGGGCCTCGACTCCCGGCGGCCGGGGGGGGGCGGCGACCGGCTGCGGCTca < 4:164413/137‑1 (MQ=255) gCGGGGCAGGTGCCACCAGCGGCGGGGTGGCGACCGGCTCTGGCTCAGGCGCCTCCCCGGGCTGCGACGCAAACGGTTGAGCGCCGGGGGCCTCCACTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTca < 8:315512/137‑1 (MQ=255) cGGGGCAGGTGCCACCAGCGGCTGGGATGCGACCGGCTCTGGCTCAGGCGCCTGCAACGGCTGCGACGCAACCGGTTCAGGGACGGGGGCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTcag > 4:76355/1‑137 (MQ=255) gggCAGGTGCCACCAGCGGCTGGGATGCGACCGGCTCTGGCTCAGGCGCCTGCAACGGCTGCGACGCACCCGGTGCAGGGACGGGGGCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGCCCGGCTGCGGCTcagcc > 8:287149/1‑137 (MQ=255) ggCCCCCAGCGGCGGGGATGCGCCCGGCGCGGGCGCCGGCGCCGGCACCGGCGGCGACGCACCCGGGGCCGGGCCGGGGGCCTCGCCTCCCGGCGGCCGGGGGGGGGCGGCGACCGGCTGCGGCTCAGCCAGCtgtg < 2:55825/136‑1 (MQ=255) ggCCACCCGCGGCTGGGCTGCGACGGGCTCGGGCTCCGGCGCCTGCACCGGCGGCGACGCACCGGGGGCAGGGCCGGGGGCCGCGCCTCCCGGCGGCCGGGGGGGGGCGGCGACCGGCTGCGGCTCAGCCAGCtgtg < 2:274580/136‑1 (MQ=255) ggCCACCCGCGGCTGGGCCGCGCCCGGCTCGGGCGCCGGCGCCTGCAACGGCTCCGACGCAACCGGGCCAGGGCCGGGGGCCCCGCCTCCCGGCGGCCGGGGGGGGGCGGCGACCGGCTGCGGCTCAGCCAGCtgtg < 4:78868/136‑1 (MQ=255) ccaGCGGCTGGGCGGCGACCGGCTCTGGCACTGGCGCCTGCAACGCCTGCGACGCCACCGGCTCCGGGACGGGGGCCGCGACTCCCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGcc < 4:317228/137‑1 (MQ=255) cGGCTGGGATGCGACCGGCTCTGGCTCAGGCGCCTGCAACGGCTGCGACGCAACCGGTTCAGGGACGGGGGCCTCGACTACAGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGCGGCCGCac > 2:318714/1‑136 (MQ=255) cTGGGATGCGACCGGCTCTGGCTCAGGCGCCTGCAACGGCTGCGACGCAACCGGTTCAGGGACGGGGGCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACgg > 2:222446/1‑137 (MQ=255) ccGGCTCTGGCGCCGGCGCCGGCACCGGCTGCGCCGCAACGGGTTCAGGGACGGGGGCCTCGACTCCCGGCGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGt < 3:162065/137‑1 (MQ=255) ggCGCTGGCTCAGCCGCCTGCCACGGCTGCGACGCAACCGGTGCAGGGACGGGGGCCGCGACTCCCGGAGGCCGGGGGGGGGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTc < 2:178621/137‑1 (MQ=255) cAGGCCCCGGCACGGGCGGCGACGCCACCGGTTCCGGGCCGGGCGCCGCGACTCCCGGAGGCCGGGGGGGGGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCtgt < 5:201302/137‑1 (MQ=255) cgcCGGCCACGGCGGCGACGCCCCCGGGTCCGGGCCGGGGGCCGCGACTCCCGGCGGCCGGGGGGGGGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGgcg < 6:3399/137‑1 (MQ=255) cgcCGGCAACGGCGGCCCCCCCACCGGTGCCGGGACGGGGGCCTCGACTCCCGGCGGCCGGGGGGGGGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGgcg < 6:95820/137‑1 (MQ=255) gcCTGCAACGGCTGCGACGCAACCGGTTCAGGGACGGGGGCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGgcgc > 8:189209/1‑137 (MQ=255) gcCTGCAACGGCTGCGACGCAACCGGTTCAGGGACGGGGGCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGgcgc > 7:199940/1‑137 (MQ=255) gcCTGCAACGGCTGCGACGCAACCGGTTCAGGGACGGGGGCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGgcgc > 6:168297/1‑137 (MQ=255) gcCTGCAACGGCTGCGACGCAACCGGTTCAGGGACGGGGGCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGgcgc > 7:104938/1‑137 (MQ=255) cAACGGCTGCGACGCAACCGGTTCAGGGACGGGGGCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTcgg > 6:47492/1‑137 (MQ=255) gCTGCGACGCACCCGGGTCCGGGCCGGGGGCCGCGACACCCGGCGGCCGGGGGGGGGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCa < 3:97355/137‑1 (MQ=255) cTGCGACGCAACCGGTTCAGGGACGGGGGCCTCGACTACCGGAGGCCGGGGGGGTGCAGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCAg > 1:159289/1‑137 (MQ=255) gggTGCAGGGACGGGGGCCTCGCCTCCCGGAGGCCGGGGGGGGGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCTCTTCTTCTTCAGATCCCTCGACCg < 1:24981/136‑1 (MQ=255) cGGTTCCGGGACGGGCGCCGCGACTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCAGATCCCTCGACCg < 7:68570/137‑1 (MQ=255) cGGGTCAGGGCCGGGGGCCGCGACTACCGGAGGCCGGGGGGGGGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCAGATCCCTCGACCg < 6:308462/137‑1 (MQ=255) cGGGTCAGGGACGGGGGCCTCGACACCCGGAGGCCGGGGGGGCGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCAGATCCCTCGACCg < 6:95773/137‑1 (MQ=255) ggTTCAGGGACGGGGGCCTCGACAACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCAGATCCCTCGACCgg < 6:313689/137‑1 (MQ=255) gTTCAGGGACGGGGGCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCAGATCCCTCGCCCggc > 2:63452/1‑136 (MQ=255) gTTCAGGGACGGGGGCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCAGATCCCTAGACCGGa > 1:249910/1‑137 (MQ=255) cgggACGGGGGCCGCGACTCCCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCAGATCCCTCGACCGGAGCgg < 2:31801/136‑1 (MQ=255) aGGGACGGGGGCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCAGATCCCTCGACCGGAGCgg > 4:102860/1‑137 (MQ=255) ggccGGGGCCCCCGCCTCCCCGCGGCCGGGGGGGGGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCAGATCCCTCGACCGGAGCGGCt < 5:322733/134‑1 (MQ=255) ggccGGGCGCCTCGACTCCCGGCGGCCGGGGGGGGGCGGCGACCGGCTGCGGCGCCGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCAGATCCCTCGACCGGAGCGGCt < 6:273996/134‑1 (MQ=255) gccgggggcCCGCGACTCCCGGAGGCCGGGGGGGGGCGGCGACCGGCTGCGGCTCAGCCAGCTGGGGGGCCGCAACGGCCTGAACGGGTGCGGGGGCCTGTGGCGCTTCGGCGGCAGATCCCTCGACCGGAGCGGCt < 7:76688/133‑1 (MQ=255) ccGGGGGCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCAGATCCCTCGACCGGAGCGGCTGc < 7:299888/136‑1 (MQ=255) ccGGGGGCCTCCACGCCCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCAGATCCCTCGACCGGAGCGGCTGc < 2:175846/136‑1 (MQ=255) ccGGGGGCCCCCCCTCCCGCCGGCCGGGGGGGGGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCAGATCCCTCGACCGGAGCGGCTGc < 4:209993/136‑1 (MQ=255) ccGGGCGCCTCGCCTACCGGCGGCCGGGGGGGGGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCAGATCCCTCGACCGGAGCGGCTGc < 8:11753/136‑1 (MQ=255) aCGGGGGCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCAGATCCCTCGACCGGAGCGGCTGc > 7:153572/1‑137 (MQ=255) gCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCAGATCCCTCGACCGGAGCGGCTGCAGACTg > 4:308833/1‑137 (MQ=255) gCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCAGATCCCTCGACCGGAGCGGCTGCAGACTg > 7:155989/1‑137 (MQ=255) gCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCAGATCCCTCGACCGGAGCGGCTGCAGACTg > 5:135836/1‑137 (MQ=255) gACTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCAGATCCCTCGACCGGAGCGGCTGCAGACTGCTCgc > 6:270810/1‑136 (MQ=255) aCTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCAGATCCCTCGACCGGAGCGGCTGCAGACTGCTCGAc > 6:186608/1‑137 (MQ=255) cTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCAGATCCCTCGACCGGAGCGGCTGCAGACTGCTCGACa > 6:226278/1‑137 (MQ=255) | GCCTGCAAGGGCATGGACGCAACCGGCTGCGGGGCAGGTGCCACCAGCGGCTGGGATGCGACCGGCTCTGGCTCAGGCGCCTGCAACGGCTGCGACGCAACCGGTTCAGGGACGGGGGCCTCGACTACCGGAGGCCGGGGGGGTGCGGCGACCGGCTGCGGCTCAGCCAGCTGTGGGGCCGCAACGGCCTGAACGGGTTCGGGGGCCTGTGGCGCTTCGGCGGCAGATCCCTCGACCGGAGCGGCTGCAGACTGCTCGACA > ACB143/5828949‑5829209 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |