| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB143 | = 209173 | NA (NA) | 3 (0.050) | 3/254 | 6.9 | 4.4% | coding (24032/28449 nt) | CJ019_00185 | hypothetical protein |
| ? | ACB143 | = 2457742 | 66 (1.100) | coding (933/1350 nt) | cusS_2 | Sensor histidine kinase CusS | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGTATCAACTCGGCggt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > ACB143/209040‑209173‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGGATGCGCTGCTGGAGTACTACGCGCCTCTGGCAGAAGACAGCGACGTGCAGATGCTGCGCGAGGGTGAAGCGGTGCTGCACGGCGACCAGCATATGCTGCGCCGGGCGCTGTCCAACCTGCTGGACAACGCCA < ACB143/2457742‑2457606 CTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGT < 3:267046/137‑1CTGGGCGTGACCCTGAGCAACAATGCCCAGGTCACCATCACGGCCGGCGAGACCAGCGCGCCATACACCCACGCGGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGAGCAGCCTGGGTATCAACTCGGCGGT < 5:215463/137‑1 AACGATGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGATGCGCTGCTGGAGTACTACGCGC > 7:83762/1‑67 AACGATGCTGGCCAGATCAGCCTGGGTATCAACTCGGCGGTGGATGCGCTGCTGGAGTACTACGCGC < 8:83762/67‑1 CGGTGGATGCGCTGCTGGAGTACTACGCGCCTCTGGCAGAAGACAGCGACGTGCAGATGCTGCGCGAGGGTGAAGCGGTGCTGCACGGCGACCAGCATATGCTGCGCCGGGCGCTGTCCAACCTGCTGGACAACGCC < 6:174981/137‑1 GGTGGATGCGCTGCTGGAGTACTACGCGCCTCTGGCAGAAGACAGCGACGTGCAGATGCTGCGCGAGGGTGAAGCGGTGCTGCACGGCGACCAGCATATGCTGCGCCGGGCGCTGTCCAACCTGCTGGACAACGCCA > 8:222349/1‑137 CTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGTATCAACTCGGCggt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > ACB143/209040‑209173‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGGATGCGCTGCTGGAGTACTACGCGCCTCTGGCAGAAGACAGCGACGTGCAGATGCTGCGCGAGGGTGAAGCGGTGCTGCACGGCGACCAGCATATGCTGCGCCGGGCGCTGTCCAACCTGCTGGACAACGCCA < ACB143/2457742‑2457606 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |