New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ACB143	= 3376608	47 (0.960)	33 (0.710)	25/246	0.6	59.8%	coding (498/546 nt)	CJ019_03184	hypothetical protein
	?	ACB143	= 5371601	0 (0.000)					intergenic (‑59/‑134)	grpE/recN	Protein GrpE/DNA repair protein RecN

AAACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ACB143/3376470‑3376608 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccataTAGCCGACATCCAAGGCGAGCCTGGCTCGCAGTCCACAAAATTGCGCAGGAGAGACCCCATGGCTGATGAGCAGCTGAACGAGAAAGACCTTAACGTGGAAGAAACCGGTGCAGGCAATGCAGCTGATA  <  ACB143/5371601‑5371473                                                                                                                                                                                                                                                                              AAACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCA                                                                                                                                     <  6:176960/137‑1           CAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGTCATGACCCCATATAGCCGAC                                                                                                                           >  3:242864/1‑137           CAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATATAGCCGAC                                                                                                                           >  3:121757/1‑137           CAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTATGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATATAGCCGAC                                                                                                                           >  5:204111/1‑137                 ATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATATAGCCGACATCCAA                                                                                                                     >  2:64906/1‑137                  TGGCTGAAGCGATTGGGTGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATATAGCCGACATCCAAG                                                                                                                    >  8:156964/1‑137                                   CGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATATAGCCGACATCCAAGGCGAGCCTGGCTCGCAG                                                                                                   <  5:66454/137‑1                                         GCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATATAGCCGACATCCAAGGCGAGCCTGGCTCGCAGTCCACA                                                                                             <  1:2644/137‑1                                              CTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATATAGCCGACATCCAAGGCGAGCGTGGCTCGCAGTCCACAAAATT                                                                                        <  3:217175/137‑1                                               TTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATATAGCCGACATCCAAGGCGAGCCTGGCTCGCAGTCCACAAAATTG                                                                                       <  7:23737/137‑1                                                         AGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATATAGCCGACATCCAAGGCGAGCCTGGCTCGCAGTCCACAAAATTGCGCAGGAGAG                                                                             >  3:209796/1‑137                                                          GGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATATAGCCGACATCCAAGGCGAGCCTGGCTCTCAGTCCACAAAATTGCGCAGTAGAGc                                                                            >  2:266396/1‑136                                                          GGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCAGGACCCCATATAGCCGACATCCAAGGCGAGCCTGGCTCGCAGTCCACAAAATTGCGCAGTAGAGA                                                                            >  2:266397/1‑137                                                                     CTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATATAGCCGACATCCAAGGCGAGCCTGGCTAGCAGTCCACAAAATTGCGCAGGAGAGACACCATGGatt                                                                 >  3:175977/1‑134                                                                         TCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATATAGCCGACATCCAAGGCGAGCCTGGCTCGCAGTCCACAAAATTGCGCAGGAGAGACCCCATGGCTGATGA                                                             >  2:109220/1‑137                                                                           GTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATATAGCCGACATCCAAGGCGAGCCTGGCTCGCAGTCCACAAAATTGCGCAGGAGAGACCCCATGGCTGATGAGC                                                           >  3:152693/1‑137                                                                           GTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATATAGCCGACATCCAAGGCGAGCCTGGCTCGCAGTCCACAAAATTGCGCAGGAGAGACCCCATGGCTGATGAGC                                                           >  6:122793/1‑137                                                                               AAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATATAGCCGACATCCAAGGCGAGCCTGGCTCGCAGTCCACAAAATTGCGCAGGAGAGACCCCATGGCTGATGAGCAGCT                                                       <  3:174520/137‑1                                                                                        AGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATATAGCCGACATCCAAGGCGAGCCTGGCTCGCAGTCCACAAAATTGCGCAGGAGAGACCCCATGGCTGATGAGCAGCTGAACGAGAA                                              >  5:253494/1‑137                                                                                          CTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATATAGCCGACATCCAAGGCGAGCCTGGCTCGCAGTCCACAAAATTGCGCAGGAGAGACCCCATGGCTGATGAGCAGCTGAACGAGAAAc                                            >  1:22218/1‑136                                                                                          CTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATATAGCCGACATCCAAGGCGAGCCTGGCTCGCAGTCCACAAAATTGCGCAGGAGAGACCCCATGGCTGATGAGCAGCTGAACGAGAAAG                                            >  6:103656/1‑137                                                                                                GAACGAATGTCCTAATTTTTGCCTTATCTCGGAATGACCCCATATAGCCGACATCCAAGGCGAGCCTGGCTCGCAGTCCACAAAATTGCGCAGGAGAGACCCCATGGCTGATGAGCAGCTGAACGAGAAAGACCTTA                                      >  2:257574/1‑137                                                                                                  ACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATATAGCCGACATCCAAGGCGAGCCTGGCTCGCAGTCCACAAAATTGCGCAGGAGAGACCCCATGGCTGATGAGCAGCTGAACGAGAAAGACCTTAAC                                    >  2:96399/1‑137                                                                                                      ATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATATAGCCGACATCCAAGGCGAGCCTGGCTCGCAGTCCACAAAATTGCGCAGGAGAGACCCCATGGCTGATGAGCAGCTGAACGAGAAAGACCTTAACGTGG                                >  5:287276/1‑137                                                                                                      ATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATATAGCCGACATCCAAGGCGAGCCTGGCTCGCAGTCCACAAAATTGCGCAGGAGAGACCCCATGGCTGATGAGCAGCTGAACGAGAAAGACCTTAACGTGG                                >  1:17164/1‑137                                                                                                      ATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATATAGCCGACATCCAAGGCGAGCCTGGCTCGCAGTCCACAAAATTGCGCAGGAGAGACCCCATGGCTGATGAGCAGCTGAACGAGAAAGACCTTAACGTGG                                >  2:29326/1‑137                                                                                                         TCCTAATTTTTGCCTTATCTCGGCATGACCCCATATAGCCGACATCCAAGGCGAGCCTGGCTCGCAGTCCACAAAATTGCGCAGGAGAGACCCCATGGCTGATGAGCAGCTGAACGAGAAAGACCTTAACGTGGAAG                             <  3:79239/137‑1                                                                                                                      CTTATCTCGGCATGACCCCATATAGCCGACATCCAAGGCGAGCCTGGC                                                                                                         >  2:227703/1‑48                                                                                                                      CTTATCTCGGCATGACCCCATATAGCCGACATCCAAGGCGAGCCTGGC                                                                                                         <  1:227703/48‑1                                                                                                                        TATCTCGGCATGACCCCATATAGCCGACATCCAAGGCGAGCCTGGCTCGCAGTCCACAAAATTGCGCAGGAGAGACCCCATGGCTGATGAGCAGCTGAACGAGAAAGACCTTAACGTGGAAGAAACCGGTGCAGGCA              <  2:365/137‑1                                                                                                                        TATCTCGGCATGACCCCATATAGCCGACATCCAAGGCGAGCCTGGCTCGCAGTCCACAAAATTGCGCAGGAGAGACCCCATGGCTGATGAGCAGCTGAACGAGAAAGACCTTAACGTGGAAGAAACCGATGCAGGCA              <  4:165310/137‑1                                                                                                                               GCATGACCCCATATAGCCGACATCCAAGGCGAGCCTGGCTCGCAGTCCACAAAATTGCGCAGGAGAGACCCCATGGCTGATGAGCAGCTGAACGAGAAAGACCTTAACGTGGAAGAAACCGGTGCAGGCAATGCAGC       <  7:156964/137‑1                                                                                                                                  TGACCCCATATAGCCGACATCCAAGGCGAGCCTGGCTCGCAGTCCACAAAATTGCGCAGGAGAGACCCCATGGCTGATGAGCAGCTGAACGAGAAAGACCTTAACGTGGAAGAAACCGGTGCAGGCAATGCAGCTGA    <  5:122793/137‑1                                                                                                                                    ACCCCATATAGCCGACATCCACGGCGAGCCTGGCTCGCAGTCCACAAAATTGCGCAGGAGAGACCCCATGGCTGATGAGCAGCTGAACGAGAAAGACCTTAACGTGGAAGAAACCGGTGCAGGCAATGCAGCTGATA  <  7:289869/137‑1                                                                                                                                                                                                                                                                              AAACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ACB143/3376470‑3376608 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccataTAGCCGACATCCAAGGCGAGCCTGGCTCGCAGTCCACAAAATTGCGCAGGAGAGACCCCATGGCTGATGAGCAGCTGAACGAGAAAGACCTTAACGTGGAAGAAACCGGTGCAGGCAATGCAGCTGATA  <  ACB143/5371601‑5371473

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.