New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ACB143	= 2172433	103 (2.170)	5 (0.110)	5/242	NT	6.0%	intergenic (+175/+93)	CJ019_02060/CJ019_02061	IS1182 family transposase ISPpu16/hypothetical protein
	?	ACB143	= 5869159	55 (1.160)					coding (688/2280 nt)	ptsP	Phosphoenolpyruvate‑dependent phosphotransferasesystem

TTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ACB143/2172341‑2172433 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGCGCAAGCTGTCGGCCAAACTGGCCACCCAGCTGCGCCCGGAAGAGCGTGCGCTGTTCGACGTCTATCTGATGATGCTTGAAGACGCAGCCCTGGGCGG  <  ACB143/5869159‑5869059                                                                                                                                                                                                    TTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGATGCGCAAGCTGTCGGCCAAACTGGCCACCCAGCTGCGCCCG                                                             >  6:153175/1‑135                       CTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGATGCGCAAGCTGTCGGCCAAACTGGCCACCCAGCTGCGCCCGGAAGAGCGTGCGCTGTTCGACG                                       >  8:210274/1‑135                                                           CCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGATGCGCAAGCTGTCGGCCAAACTGGCCACCCAGCTGCGCCCGGAAGAGCGTGCGCTGTTCGACGTCTATCTGATGATGCTTGAAGACGCAGCCCTGGGCGG  >  4:173228/1‑136                                                                AACGCATTTCGCGTGTTTTCACACAGCCTGATGCGCAAGCTGTCGGCCAAACTGGCCACCCAGCTGCGCCCGGAAGAGCGTGCGCT                                               <  7:265282/86‑1                                                                AACGCATTTCGCGTGTTTTCACACAGCCTGATGCGCAAGCTGTCGGCCAAACTGGCCACCCAGCTGCGCCCGGAAGAGCGTGCGCT                                               >  8:265282/1‑86                                                                                                                                                                                                    TTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ACB143/2172341‑2172433 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGCGCAAGCTGTCGGCCAAACTGGCCACCCAGCTGCGCCCGGAAGAGCGTGCGCTGTTCGACGTCTATCTGATGATGCTTGAAGACGCAGCCCTGGGCGG  <  ACB143/5869159‑5869059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.