| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | KT2440 | 1821217 = | 45 (0.930) | 3 (0.070) | 3/234 | 5.1 | 6.6% | coding (1015/1068 nt) | recA | Protein RecA |
| ? | KT2440 | = 1821213 | 43 (0.960) | coding (1011/1068 nt) | recA | Protein RecA | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACGTCGTGCGAGCAGGTCCATGGCTGTCCGCCGGATGGCGACGGGGGTGTCGAGTACGGCAGACATATTCGGCTATCTACTGCGCAATCAATAACCGGCGTCAGCGTCGGCCATGTCATCGGCATCAGCTTCAGCAGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < KT2440/1821357‑1821217‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcagcagcTTTGCCGGCTTCAGCAGCAGCACCCGCTTTCAGCAACTTCTCACGAATCTGCTTCTCGATCTCGGCACCAATAGCCGGGTTCTCAGCCAGGTACTTGGCAGCGTTGGCTTTGCCTTGACCGATCTTGTTGCCT < KT2440/1821213‑1821081 ACGTCGTGCGAGCAGGTCCATGGCTGTCCGCCGGATGGCGACGGGGGTGTCGAGTACGGCAGACATATTCGGCTATCTACTGCGCAATCAATAACCGGCGTCAGCGTCGGCCATGTCATCGGCATCAGCTTCA > 6:246906/1‑133 GTCGTGCGAGCAGGTCCATGGCGGTCCGCCGGAGGGCGACGGGGGTGTCGAGTACGGCAGACATATTCGGCTATCTACTGCGCAATCAATAACCGGCGTCAGCGTCGGCCATGTCATCGGCATCAGCTTCAGCAG < 4:297422/135‑1 CGTGCGAGCAGGTCCATGGCTGTCCGCCGGATGGCGACGGGGGTGTCGAGTACGGCAGACATATTCGGCTATCTACTGCGCAATCAATAACCGGCGTCAGCGTCGGCCATGTCATCGGCATCAGCTTCAGCAGCAG < 8:262092/136‑1 GTGCGAGCAGGTCCATGGCTGTCCGCCGGATGGCGACGGGGGTGTCGAGTACGGCAGACATATTCGGCTATCTACTGCGCAATCAATAACCGGCGTCAGCGTCGGCCATGTCATCGGCATCAGCTTCAGCAGCA > 4:52366/1‑134 AGACATATTCGGCTATCTACTGCGCAATCAATAACCGGCGTCAGCGTCGGCCATGTCATCGGCATCAGCTTCAGCAGCAGCTTTGCCGGCTTCAGCAGCAGCACCCGCTTTCAGCAACTTCTCACGAATCTGCTT > 3:99906/1‑135 CAATCAATAACCGGCGTCAGCGTCGGCCATGTCATCGGCATCAGCTTCAGCAGCAGCTTTGCCGGCTTCAGCAGCAGCACCCGCTTTCAGCAACTTCTCACGAATCTGCTTCTCGATCTCGGCACCAATAGCCGG < 4:99906/135‑1 AATCAATAACCGGCGTCAGCGTCGGCCATGTCATCGGCATCAGCTTCAGCAGCAGCATTGCCGGCTTCAGCAGCAGCACCCGCTTTCAGCAACTTCTCACGAATCTGCTTCTCGATCACGTCACCAAAAGCCGGGT > 8:74710/1‑136 CAGCTTTGCCGGCTTCAGCAGCAGCACCCGCTTTCAGCAACTTCTCACGAATCTGCTTCTCGATCTCGGCACCAATAGCCGGGTTCTCAGCCAGGTACTTGGCAGCGTTGGCTTTGCCTTGACCGATCTTGTTGC > 6:30579/1‑135 AGCTTTGCCGGCTTCAGCAGCAGCACCCGCTTTCAGCAACTTCTCACGAATCTGCTTCTCGATCTCGGCACCAATAGCCGGGTTCTCAGCCAGGTACTTGGCAGCGTTGGCTTTGCCTTGACCGATCTTGTTGCCT > 7:175835/1‑136 AGCTTTGCCGGCTTCAGCAGCAGCAACCGCTTTCAGCAACTTCTCACGAATCTGCTTCTCGATCTCGGCACCAATAGCCGGGTTCTCAGCCAGGTACTGGGCAGCGTTGGCTTTGCCTTGACCGCTCTTGTTGCC > 2:134705/1‑135 ACGTCGTGCGAGCAGGTCCATGGCTGTCCGCCGGATGGCGACGGGGGTGTCGAGTACGGCAGACATATTCGGCTATCTACTGCGCAATCAATAACCGGCGTCAGCGTCGGCCATGTCATCGGCATCAGCTTCAGCAGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < KT2440/1821357‑1821217‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcagcagcTTTGCCGGCTTCAGCAGCAGCACCCGCTTTCAGCAACTTCTCACGAATCTGCTTCTCGATCTCGGCACCAATAGCCGGGTTCTCAGCCAGGTACTTGGCAGCGTTGGCTTTGCCTTGACCGATCTTGTTGCCT < KT2440/1821213‑1821081 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |