New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? KT2440 = 49188010 (0.000)47 (0.910) 28/230 NT 100% coding (6/789 nt) soj_1 Sporulation initiation inhibitor protein Soj
?KT2440 5216408 = NA (NA)intergenic (‑50/+386) rhaS_5/CJ019_01212 HTH‑type transcriptional activator RhaS/IS110 family transposase ISPpu9

TAGCTGGTCATCGAGCCGTGCGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  KT2440/4918667‑4918801
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCC  >  KT2440/5216408‑5216540
                                                                                                                                                                                                                                                                            
TAGCTGGTCATCGAGCCGTGCGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCCGGAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGGCGACACCACCTTTTTTATTGGCTACTGCCCAGACgt                                                                                                                                      >  3:274949/1‑134
       TCATCGAGCCGTGCGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATC                                                                                                                                 <  7:219922/134‑1
                    CGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGCCCCCACCGTTTTGATTTGCTTCTGCCCAGACTTCGATCAAAAAAAAGATAAC                                                                                                                   >  8:152635/1‑135
                    CGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACC                                                                                                                  >  3:303287/1‑136
                    CGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAAC                                                                                                                   <  6:258174/135‑1
                     GGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAAC                                                                                                                   >  8:106227/1‑134
                     GGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAAC                                                                                                                   <  7:106227/134‑1
                               CGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTT                                                                                                       >  4:234218/1‑136
                                GACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTT                                                                                                       <  8:35447/135‑1
                                                  GCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGGAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG                                                                                    <  4:97967/136‑1
                                                   CCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGGGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGC                                                                                     <  8:34111/134‑1
                                                    CGGCCTCGGCCAGCAGGCCGGACAGGGCAATGGTAGTGGTTGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGC                                                                                   <  8:276238/135‑1
                                                                         CCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGCCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGCGTCAATGGCGGCGAAGg                                                             >  3:96875/1‑135
                                                                          CAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGT                                                             <  5:81811/135‑1
                                                                          CAGGGCAATGGTAGTGGTGGGCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGT                                                             <  7:348671/135‑1
                                                                           AGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                           <  3:234218/136‑1
                                                                           AGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                           <  3:291293/136‑1
                                                                           AGGGCAATGGTAGTGGTGGTCTGGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                           <  3:273031/136‑1
                                                                           AGGGCAATGGTAGTGGTGGTCGTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTGCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                           <  3:310853/136‑1
                                                                            GGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                           <  1:89737/135‑1
                                                                            GGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                           <  8:252869/135‑1
                                                                            GGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                           <  1:4338/135‑1
                                                                            GGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                           <  7:218454/135‑1
                                                                            GGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTCGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                           <  5:193892/135‑1
                                                                              gctATGGTAGTGGTGGGCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTC                                                         <  5:30101/132‑1
                                                                              GCAATGGTAGTGGTTGTCTTGCCGACACCACCTTTTTGATTGGCTACTTCACAGACTTCTATCAAACTAAAGATAACCAACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTC                                                         <  5:304328/135‑1
                                                                              GCAATGGTAGTGGTGGTCTTGCCGACACCAACTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTC                                                         <  1:107063/135‑1
                                                                                     TAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGCCAATGGCGGCGAAGTGTTCACTCTT                                                   >  2:304878/1‑134
                                                                                          GTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACG                                            >  3:190575/1‑136
                                                                                          GTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATAC                                             >  5:93188/1‑135
                                                                                          GTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTC                                                         <  4:212249/123‑1
                                                                                          GTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTC                                                         >  3:212249/1‑123
                                                                                           TGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGT                                           >  3:49585/1‑136
                                                                                               CTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGG                                         >  2:210227/1‑134
                                                                                                TTGCCGACGCCACCTTTTTGATTGGCTACTGACCAGACTTCTATCAAACAAAAGATAACCCACTTTACTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGTCGGCGAAGTGTTCACTCTTCTATACGTGGT                                        >  7:372911/1‑134
                                                                                                TTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCCCTCTTCTATACGTGGTC                                       >  6:35899/1‑135
                                                                                                  GCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCAC                                     <  4:49585/135‑1
                                                                                                  GCCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTC                                       >  1:45608/1‑133
                                                                                                   CCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAG                                   >  3:30205/1‑136
                                                                                                   CCGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACA                                    >  2:83919/1‑135
                                                                                                    CGACACCACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGC                                  <  4:190575/136‑1
                                                                                                          CACCTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCT                             <  6:282308/135‑1
                                                                                                             CTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGT                                           <  6:283364/118‑1
                                                                                                             CTTTTTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTAAACGT                                           >  5:283364/1‑118
                                                                                                                 TTGATTGGCTACTGCCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCG                       <  7:133351/134‑1
                                                                                                                 TTGAATGGCTACTGCCCAGACTTCAAACAAACAAAAGAAAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCG                       <  5:1095/134‑1
                                                                                                                      gGGCTACTGCCCTGACTGCTATCAAACAAAACTTACCCAACTGTTCTTTCTAGCGAAAAAACCAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGG                 <  3:4549/134‑1
                                                                                                                               CCCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCC        <  3:85162/135‑1
                                                                                                                                CCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCG       <  1:136331/135‑1
                                                                                                                                CCAGACTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCC        <  1:83919/134‑1
                                                                                                                                     CTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCC  >  1:298470/1‑135
                                                                                                                                                                                                                                                                            
TAGCTGGTCATCGAGCCGTGCGGGTCGAGGTCGACGACGACCACGCGCTTGCCGGCCTCGGCCAGCAGGCCGGCCAGGGCAATGGTAGTGGTGGTCTTGCCGACACCACCTTTTTGATTGGCTACTGCCCAGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  KT2440/4918667‑4918801
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCC  >  KT2440/5216408‑5216540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.