New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	KT2440	= 5541338	81 (1.430)	3 (0.050)	3/254	6.4	3.8%	coding (1542/2574 nt)	rnr	Ribonuclease R
	?	KT2440	5541343 =	73 (1.320)					coding (1537/2574 nt)	rnr	Ribonuclease R
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGGCTCAGCGAGCGCAGCATCACCGTCTGGATCAGGTGGAAGTCCGGGCGACCGGCGATGCTCGCCAGCAGGGCCTGGTAGTCCTTCGGCGACGGGTCCTTGCCCTTGTGCAGGCTAAGGCCCAACTCGCCGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  KT2440/5541203‑5541338 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggCGCGCAGTTTTTCCAGGCGCTCCGGCGGCGGGCCGTCGTGCACGCGGTACAGGGCCGGTACGCCGTGCTTCTGCAGGAACTCGGCGGTGGCCACGTTGG  >  KT2440/5541343‑5541441                                                                                                                                                                                                                                             CTGGCTCAGCGAGCGCAGCATCACCGTCTGGATCGGGTGGAAGTCCGGGCGACCGGCGATGCTCGCCAGCAGGGCCTGGTAGTCCTTCGGCGACGGGTCCTTGCCCTTGTGCAGGCTAAGGCCCAACTCGCCGAGGC                                                                                                    >  8:35157/1‑137                           TCTGGATCAGGTGGAAGTCCGGGCGCCCGGCGATGCTCGCCAGCAGGGCCTGGTAGTCCTTCGGCGACGGGTCCTTGCCCTTGTGCAGGCTAAGGCCCAACTCGCCGAGGCGCGCAGTTTTTCCAGGCGCTCCGGCG                                                                          >  4:82674/1‑137                                                                                                   CCTTGCCCTTGTGCAGGCTAAGGCCCAACTCGCCGAGGCGCGCAGTTTTTCCAGGCGCTCCGGCGGCGGGCCGTCGTGCACGCGGTACAGGGCCGGTACGCCGTGCTTCTGCAGGAACTCGGCGGTGGCCACGTTGG  <  3:82674/137‑1                                                                                                                                                                                                                                             CTGGCTCAGCGAGCGCAGCATCACCGTCTGGATCAGGTGGAAGTCCGGGCGACCGGCGATGCTCGCCAGCAGGGCCTGGTAGTCCTTCGGCGACGGGTCCTTGCCCTTGTGCAGGCTAAGGCCCAACTCGCCGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  KT2440/5541203‑5541338 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggCGCGCAGTTTTTCCAGGCGCTCCGGCGGCGGGCCGTCGTGCACGCGGTACAGGGCCGGTACGCCGTGCTTCTGCAGGAACTCGGCGGTGGCCACGTTGG  >  KT2440/5541343‑5541441

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.