Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | KT2440 | 434,376 | 0 | G | . | 30.0% | 68.2 / 30.8 | 30 | coding (207/1173 nt) | bioF | 8‑amino‑7‑oxononanoate synthase |
Reads supporting (aligned to +/- strand): ref base G (13/8); new base . (5/4); total (18/12) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.24e-01 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
AGCCCGCAAGGGCCGGAAGTGGTGGTCGACGGCCAGCGGTTGCTGGCCTTCTGCAGCAATGACTACCTGGGCCTGGCCAACCACCCCGAGGTGATCGCCGCCTGGCAGGCCGGCGCCGAGCGCTGGGGTGTGGGGGGGGGGGCCTCGCACCTGGTAGTTGGCCACAGCACCCCGCACCATCAGGTTGAAGAGGCACTGGCTGAACTCACCGGCCGCCCGCGCGCCCTGTTGTTCTCCACCGGCTATATGGCCAATCTGGGCGCC > KT2440/434245‑434508 | aGCCCGCAAGGGCCGGAAGTGGTGGTCGACGGGCCGCGGTTGGTGGGCGTGGGGCGCAATGGCTACCGGGGCCGGGCCAACCACCCCGAGGTGATAGCCCCCGGGCAGGCCGGCGCCGCCGGCGGGGGTGTgggggg > 2:154664/1‑137 (MQ=255) aGCCCGCAAGGGCCGGAAGTGGTGGACGACGGCCAGCGGGTGCTGGCCTTCGGCAGCAATGACGACCTGGGCCTGGCCAACCCCCCCGCGGTGATCGCCGCCTGGCAGGCCGGCGCCGAGCGCGGGGGTGTgggggg > 3:182442/1‑137 (MQ=255) gCAAGGGCCGGAAGTGGTGGTCGACGGCCCGCGGGTTGTGGGCGTGTGGCGCAATTACTAACAGGGGCTGGCCCACCCCCCCCCGGTGATAGCCCCCGGGCCCGCCCGCGCCGCGCCCGgggggggggggggggggg > 2:319042/1‑137 (MQ=255) aaGGGCCGGAAGTGGTGGTCGACGGCCAGCGGTTTGGGGGCGTCTGCCGCAATGACAACCAGGGCCCGGCCCACCACCCCCAGGTGATAGCCCCCGGGCCGGCCGGCGCCGAGCGCTGGGGGGTggggggggggggg > 4:204962/1‑135 (MQ=255) aGGGCCGGAAGTGGTGGTCGACGGCCCGCGGTTGCTGGGCGTCTGCCGCAATGCATACCTGGGCCGGGCCAACCACCCCGCGGTGATAGCCCCCGGGCAGGCCGGCGCCGCGCGCGgggggggggggggggggggcg > 1:341467/1‑134 (MQ=255) cgCGGGTGGTGGCCTTGTGCAGCAAACCCACCCGGGGCCGGGCCAACCCCCCCGCGGGGCTCGCCGCCGGGCCGGCCGGCCCCGCGGCGGGGGGGGGGGGGGGGGGGGCCTCGCACCTGGTAGTTGGCCACAGCAcc < 8:190110/136‑1 (MQ=255) tGCTGGCCTTCTGCAGCAATGACAACCTGGGCCGGGCCAACCCCCCCGCGGTGATCGCCGCCGGGCCGGCCGGCGCCGCGCGCTGGGGGGTGGGGGGGGGGGCCTCGCACCTGGTAGTTGGCCACAGCACCCCGCAc < 1:104014/137‑1 (MQ=255) gCCTTCTGCAGCAATGACTACCTGGGCCTGGCCAACCACCCCGAGGTGATCGCCGCCTGGCAGGCCGGCGCCGAGCGCTGGGGTGTGGGGGGGGGGGCCTCGCACCTGGTAGTTGGCCACAGCCCCCCGCACCATCa > 4:417260/1‑137 (MQ=255) cTTCTGCAGCAATGACTACCTGGGCCTGGCCAACCACCCCGAGGTGATCGCCGCCTGGCAGGCCGGCGCCGAGCGCTGGGGTGTGGGGGGGGGGGCCTCGCACCTGGTAGTTGGCCACAGCACCCCGCACCATCAgg > 6:115809/1‑137 (MQ=255) cgcaATTACACCCGGGGCCTGGCCAACACCCCCGTGTGTATGCCCGGCTGGCCGGGCGGGGCCGCGCGGGGGGGGTGGGGGGGGGGGGCCTCGCACCTGGTAGTTGGCCACAGCACCCCGCACCATCAGGTTGAaga < 5:284047/136‑1 (MQ=255) accaATCACTACCGGGGCCGGGCCAACCCCCCCGCGGTGCGCGCCGCCGGGCCGGCGGGCGCCGCGGGCTGGGGGGTGGGGGGGGGGGCCTCGCACCTGGTAGTTGGCCACAGCACCCCGCACCATCAGGTTGAaga < 7:290327/135‑1 (MQ=255) cccccggggCCTGGCCCACCCCCCCCGGGGGTTCGCCGCCGGGCCGGCCGGGGCCGCCCGGGGGGGGGGGGGGGGGGGGGCCTCGCACCTGGTAGTTGGCCACAGCACCCCGCACCATCAGGTTGAAGAGGCACTgg < 8:108447/131‑1 (MQ=255) aCCTGGGCCTGGCCAACCACCCCGAGGTGATCGCCGCCTGGCAGGCCGGCGCCGAGCGCTGGGGTGTGGGGGGGGGGGCCTCGCACCTGGTAGTTGGCCACAGCACCCCGCACCATCAGGTTGAAGAGGCACTGGCt > 5:257876/1‑137 (MQ=255) cTGGCCAACCACCCCGAGGTGATCGCCGCCTGGCAGGCCGGCGCCGAGCGCTGGGGTGTGGGGGGGGGGGCCGCGCCCCTGGTAGTTGGCCACAGCACCCCGCCCCATCAGGTTGAAGAGGCACAGGCTGAAcaacc > 7:453540/1‑133 (MQ=255) tGGCCAACCACCCCGAGGTGATCGCCGCCTGGCAGGCCGGCGCCGAGCGCTGGGGTGTGGGGGGGGGGGCCTCGCACCTGGTAGTTGGCCACAGCACCCCGCACCATCAGGTTGAAGAGGCACTGGCTGAACTCAcc > 7:59168/1‑137 (MQ=255) aaCCACCCCGAGGTGATCGCCGCCTGGCAGGCCGGCGCCGAGCGCTGGGGTGTGGGGGGGGGGGCCTCGCCCCGGGTAGTTGGCCACACCACCCCGCCCCTTCAGGTTGAAGAGGCACTGGCTGAACTCACCGgccg > 3:301398/1‑137 (MQ=255) ccccGCGGGGCTCCCCGCCGGGCCGGCCGGGGCCGCGCGGGGGGGGGGGGGGGGGGGGGCCTCGCACCTGGTAGTTGGCCACAGCACCCCGCACCATCAGGTTGAAGAGGCACTGGCTGAACTCACCGGccgcccgc < 5:332164/137‑1 (MQ=255) ccccGAGGTGATCGCCGCCTGGCAGGCCGGCGCCGAGCGCTGGGGTGT‑GGGGGGGGGGCCTCGCACCTGGTAGTTGGCCACAGCACCCCGCACAATCAGGTTGAAGAGGCACTGGCTGAACTCACCGGCCGCCcgcg > 8:248759/1‑137 (MQ=255) aGGTGATCGCCGCCTGGCAGGCCGGCGCCGAGCGCTGGGGTGT‑GGGGGGGGGGCCTCGCACCTgg > 5:253689/1‑65 (MQ=255) aGGTGATCGCCGCCTGGCAGGCCGGCGCCGAGCGCTGGGGTGT‑GGGGGGGGGGCCTCGCACCTgg < 6:253689/65‑1 (MQ=255) ggTGATCGCCGCCTGGCAGGCCGGCGCCGAGCGCTGGGGTGTGGGGGGGGGGGCGGCGCCCCTGGTAGTTGGCCACAGCCCCCCGCACCATCAGGTTGAAGCGGCACTGGCGGACCACACCGGCCGCCCGCGCGccc > 8:402267/1‑137 (MQ=255) tGATCGCCGCCTGGCAGGCCGGCGCCGAGCGCTGGGGTGTGGGGGGGGGGGCCTCGCCCCTGGTTGTTGGCCACCGCCCCCCGCCCCTTCAGGTTGAAGTGGCACTGGCGGAACTACCCGGCCGCCCGCGCGcccgg > 7:431332/1‑135 (MQ=255) gccgccTGGCAGGCCGGCGCCGAGCGCTGGGGTGTGGGGGGGGGGGCCTCGCCCCTGGTAGTTGGCCACAGCACCCCGCCCCATACGTTGGAAGAGGCACTGGCTGCACTCACCGGCCGCCCGCGCGCCCTgttgtt > 7:106485/1‑137 (MQ=255) gccgccTGGCAGGCCGGCGCCGAGCGCTGGGGTGTGGGGGGGGGGGCCTCGCCCCGGGTAGTTGGCCACAGCCCCCCGCCCCATCAGGTTGATGAGGCACTGGCGTAACTCACCGGCCGCCCGCGCGCCCGgttttt > 8:268084/1‑137 (MQ=255) gccgccTGGCAGGCCGGCGCCGAGCGCTGGGGTGTGGGGGGGGGGGCCTCGCACCTGGTAGTTGGCCACAGCACCCCGCACCATCAGGTGGAAGAGGCCCTGGCTGAACTCACCGGCCGCCCCCGGGCCCGgttgtt > 3:34953/1‑137 (MQ=255) gccgccTGGCAGGCCGGCGCCGAGCGCTGGGGTGT‑GGGGGGGGGGCCTCGCACCTGGTAGTTGGCCACAGCACCCCGCACCATCAGGTTGAAGAGGCACTGGCTGAACTCACCGGCCGCCCGCGCGCCCTGTTGTtc > 8:368399/1‑137 (MQ=255) ccgccTGGCAGGCCGGCGCCGAGCGCTGGGGTGTGGGGGGGGGGGCCTCGCCCCTGGTAGTTGGCCACCGCCCCCCGCACCATCAGGTTGAAGAGGCACTGGCTTAACTCACCGGCCGCCCCCGCGCCCggttgtgc > 2:445928/1‑135 (MQ=255) ccgccTGGCAGGCCGGCGCCGAGCGCTGGGGTGT‑GGGGGGGGGGCCTCGCACCTGGTAGTTGGCCACAGCACCCCGCACCATCAGGTTGAAGAGGCACTGGCTGAACTCACCGGCCGCCCGCGCGCCCTGTTGTtct > 5:349005/1‑137 (MQ=255) cgccGGGCAGGCCGGTGGCGACCGCTGGGGTGT‑GGGGGGGGGGCCTCGCACCTGGTAGTTGGCCACAGCACCCCGCAGCTTGATGTTGAAGAGGCACTGGCTGTACTCACCGGCCGCCCGCGCGCCCTGTTGTtctc < 6:20784/137‑1 (MQ=255) gccTGGCTGGCCGGCGCCGTGGGGTGGGGGGTGGGGGGGGGGGCCTCGCACCTGGTAGTTGGCCACAGCACCCCGCACCATCAGGTTGAAGAGGCACTGGCTGAACTCACCGGCCGCCCGCGCGCCCTGTTGTtctc < 6:257876/137‑1 (MQ=255) gccTGGCCGGCCGGCGCCGAGGGGTGGGGTGTGGGGGGGGGGGCCTCGCACCTGGTAGTTGGCCACAGCACCCCGCACCATCAGGTTGAAGAGGCACTGGCTGAACTCACCGGCCGCCCGCGCGCCCTGTTGTtctc < 3:122572/137‑1 (MQ=255) gccggCGGGGGCCGGGCGGGGGGGGGT‑GGGGGGGGGGCCTCGCACCTGGTAGTTGGCCACAGCACCCCGCACCATCAGGTTGAAGAGGCACTGGCTGAACTCACCGGCCGCCCGCGCGCCCTGTTGTTCTCCACCgg < 1:214920/134‑1 (MQ=255) cGGCGCCGAGCGCGGGGGGGT‑GGGGGGGGGGCCTCGCACCTGGTAGTTGGCCACAGCACCCCGCACCATCAGGTTGAAGAGGCACTGGCTGAACTCACCGGCCGCCCGCGCGCCCTGTTGTTCTCCACCGGCTatat < 6:426129/137‑1 (MQ=255) ggTGTGGGGGGGGGGGCCTCGCACCTGGTAGTTGGCCACAGCACCCCGCACCATCAGGTTGAAGAGGCACTGGCTGAACTCACCGGCCGCCCGCGCGCCCGGTTGTTCTCCACCGGCTATATGGCCAATCTGGgcgc > 3:22504/1‑137 (MQ=255) ggTGT‑GGGGGGGGGGCCTCGCCCCTGGTAGTTGGCCACAGCACCCCGCACCATCAGGTTGAAGAGGCAATGGCTGAACTCACCGGCCGCCCGCGCGCCCGGTTGTTCTCCACCGGCTATATGCGCAATCTGGGCGcc > 5:274024/1‑137 (MQ=255) | AGCCCGCAAGGGCCGGAAGTGGTGGTCGACGGCCAGCGGTTGCTGGCCTTCTGCAGCAATGACTACCTGGGCCTGGCCAACCACCCCGAGGTGATCGCCGCCTGGCAGGCCGGCGCCGAGCGCTGGGGTGTGGGGGGGGGGGCCTCGCACCTGGTAGTTGGCCACAGCACCCCGCACCATCAGGTTGAAGAGGCACTGGCTGAACTCACCGGCCGCCCGCGCGCCCTGTTGTTCTCCACCGGCTATATGGCCAATCTGGGCGCC > KT2440/434245‑434508 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |