| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | KT2440 | 2,266,996 | T→G | 15.8% | N143T (AAC→ACC) | CJ019_02153 ← | putative HTH‑type transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | KT2440 | 2,266,996 | 0 | T | G | 15.8% | 238.8 / 7.2 | 124 | N143T (AAC→ACC) | CJ019_02153 | putative HTH‑type transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (42/57); new base G (22/2); total (64/60) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.88e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 124 total aligned reads displayed.
GCGGTTGATAGCGCGCGGCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGC > KT2440/2266865‑2267128 | gCGGTTGATAGCGCGCGGCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGt < 2:269203/135‑1 (MQ=255)gCGGTTGATAGCGCGCGGCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGt < 1:365488/135‑1 (MQ=255) cGGTTGATAGCGCGCTGCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTa < 6:105536/135‑1 (MQ=255) cGGTTGATAGCGCGCGGCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGGCGGCCAGCGCGGCCAACAGGGCCCGCCCCCCCGCCCGCACTGACTCGACCACCAAGCGGGTGTa > 6:265977/1‑135 (MQ=255) cGGTTGATAGCGCGCGGCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGCCCCCAAAGCGGTTGTAg > 8:213515/1‑136 (MQ=255) cGGTTGATAGCGCGCGGCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTa > 3:263643/1‑135 (MQ=255) gATAGCGCGCGGCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCCGCCAGCCGGCCAGCCGTGAGTCGCCCACACAGCGGGTGTAGTCgg > 1:19048/1‑134 (MQ=255) gATAGCGCGCGGCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCACCCAGCCGGCCAGCCGTGAGTCGACCCCCAAGCGGGTGGAGTCgg > 6:258984/1‑134 (MQ=255) aTAGCGCGCGGCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTg > 7:146429/1‑136 (MQ=255) aTAGCGCGCGGCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGGTGTAGTCGTTg > 8:93324/1‑136 (MQ=255) gcgcgcGGCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGt < 5:371198/134‑1 (MQ=255) gcgcgGCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCCGCCCGCACCGCCAACTGGGCCAGCCAGCCCGCCACCAGTGAGTAGACCACCAAGCGGGTGTAGTCGgtgtttg > 1:104819/1‑132 (MQ=255) gcgGCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGGCGGCCAGCTCGGCCCACTGGGGCCCCCCCCCGGCGCGCCGGGAGTCGCCCACAAAGCGGGTGTTGTGGGTGTGgggg > 5:362308/1‑135 (MQ=255) gcgGCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCCGCCAGCTCCGCCCACTGGGCCCGCCCGCCGGCCAGCAGTGAGTCGACCACAAAGCGGGTGTAGTCGTTGTAGGGGc > 7:214378/1‑136 (MQ=255) cgGCTTAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGc < 6:236911/135‑1 (MQ=255) cgGCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGc < 1:175883/135‑1 (MQ=255) cgGCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGc < 4:263643/135‑1 (MQ=255) cgGCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGc < 1:32703/135‑1 (MQ=255) cgGCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGc < 3:84243/135‑1 (MQ=255) cgGCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGc < 3:78484/135‑1 (MQ=255) aggCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGGGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGc < 5:36865/134‑1 (MQ=255) ggCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCCACTGGGGCCGCCAGCCGGCCAGCAGTGAGTCGACCCCAAAGCGCTTGTAGTAGTTGTAtggggt > 4:68861/1‑133 (MQ=255) ggCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTg < 4:292624/118‑1 (MQ=255) ggCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCt > 3:386808/1‑135 (MQ=255) ggCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCCGCCAGCTCGGCCAACTTGGCCCCCCAGCCGGCCAGCCGTGAGTCGACCACAAAGCGGGTGTAGTCGTTGGAGGGGCt > 5:105043/1‑135 (MQ=255) ggCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCCGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTg > 3:292624/1‑118 (MQ=255) ggCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCCACTGGGCCAGCCCGCCGGCCCGCCGTGAGTCGACCCCAAAGCGGGTGTAGTCGTTGGATGGGCGGCTGGGATa > 1:93527/1‑134 (MQ=255) cgcgGCAACCTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGaa < 2:387111/135‑1 (MQ=255) gcgGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACCAAGCGGTTGGAGTCGTTGTTGGGGCTGATGGTATAGAAgc > 7:404778/1‑136 (MQ=255) gcgGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCGCGGCCCACAGGGCCCGCCCGCCGGCCAGCAGTGAGTCGCCCACAAAGCGGGTGTAGTCGTTGTATGGGCTGATGGTATATAAgc > 8:279987/1‑136 (MQ=255) ggCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCCCCTCGGCCCACAGGGCCCGCCAGCCCGCCCGCAGTGAGTAGACCCCAAACCGGTTGTTGTGGTTGTTTGGGGGGATTGTATAGAAgct > 6:36865/1‑134 (MQ=255) ggCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCCACTGGGCCAGCCAGCCGGCCCGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAgcg > 3:154244/1‑135 (MQ=255) ggCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCCACTGGGCCACCCCGCCGGCCCGCCGTGAGTCGCCCACAAAACGGGTGGAGTCGTTGTAGGGGCGGATGGGATAGAAccg > 1:149928/1‑135 (MQ=255) ggCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCCACAGGGCCACCCAGCCGGCCCGCCGTGAGTCGCCCCCAAACCGGGTGGAGTCGTTGTAGTGGCGGTTGGATTATGAgcg > 2:435632/1‑135 (MQ=255) ggCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCCGCCAGCCGGCCAGCAGTGAGTCGCCCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATTGAAtcgc > 8:275027/1‑136 (MQ=255) ggCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCCGCCAGCCGGCCAGCACTGAGTCTCCCACAAAGCGGGTGTAGTCGTTGTGGGGGGTGATGGAATAGAAgcg > 6:339916/1‑135 (MQ=255) ggCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCCGCCACCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTTTAGTCGTTGTAGGGGCTGATGGAATAGAAgc > 6:135690/1‑134 (MQ=255) ggCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCCGCCACCCCGCCCGCAGTGAGTCGACCACAAAACGGGTGTAGTCGTTGTAGGGGCTGATGGAATAGAAgcg > 3:195569/1‑135 (MQ=255) ggCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCCGCCGGCCAGCAGTGAGTCGCCCACAAACCGGGTGTAGTCGTTGTTGGGGGGGATGGGATATAAgcg > 5:236916/1‑135 (MQ=255) ggCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCCGCAGGGAGTCGACCAAAAAGCGGTTGTAGTCGTTTTAGGGGCTGCTGGAATAGCAgcgc > 7:54537/1‑136 (MQ=255) ggCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAgcg > 8:153505/1‑135 (MQ=255) ggCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGACAGCCCGCCAGCAGTGAGTCGACCACAAAGCGGGTGTAGTCGTTGTAGGGGCGGATGGAATAGAAgc > 1:121810/1‑134 (MQ=255) ggCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACATGGCCAGCCCCCCGGCCAGCAGTGAGTCGCCCACAAAGCGGGTGTAGTCGTTGTTGGGGCGGATGGAATATAAgcg > 1:119021/1‑135 (MQ=255) ggCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCACCACGGCCCACAGGGCCACCCCCCCGGCCAGCAGTGCGTCGGCCACCAAGCCGTGGTAGTCGTTGGAGGGGGAGATGGAATTGAAgcg > 5:79647/1‑135 (MQ=255) ggCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAACTCGGCCAACGGGGCCAGCCAGCCGGCCCGCAGAGAGTCGACCCCAAAGGGGTTGTTTTCGGTGTTGTGGGTGATGGAATAGAAtcg > 4:338849/1‑135 (MQ=255) ggCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCCGCCAGCTAGGCCAACTGGGCCAGCCAGCCGGCCAGCAGGGATTCGCCCACAAAGCGGTTGTAGTTGTTGTAGGGGCTGATGGAATAGAAgcg > 5:445434/1‑135 (MQ=255) gATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGgcg < 8:390352/136‑1 (MQ=255) gCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACAGGGCCCCCCCGCCCGCCCGCAGTGAGTCGCCCACCAACCGGGTGGTGTCGGTGTAGGGGGGGATGGAATAGCAGCGCAGCCCGGCGCCCTGGGc > 4:81119/1‑135 (MQ=255) ggCCTGCACCGGGGTGCCCGCCACCTAGGCCAAATGTGCCCCCCAGCCGGCCCGCCGTGCCTCGACCACAAAGCCGTTGGATTCGTTGTAAGGGCTGCTTGATTAGTAGCGCAGCCCTGCGCCCAGGGCaacgtg > 4:132135/1‑130 (MQ=255) ccTGCACCGGGGTGCCGGCCAGCTCGGGCAACTGGGCCAGCCCGCCGGCCAGCAGTGAGTCGCCCACAAAGCGGTTGTAGTCGGTGTTGGGGCGGATGGGATAGAAGCGCAGCCCGGCGCCCGGGGCCTCGTCCt > 8:18667/1‑135 (MQ=255) cTGCACCGGGGGGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTc < 5:280730/135‑1 (MQ=255) ccGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGGTGTAGTCGTTGTTGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGc > 6:84561/1‑135 (MQ=255) tGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAAt < 5:316977/135‑1 (MQ=255) gCCGGCCAGCTCGGCCAACTTGGCCCGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTAGTTGTAGGGGCTGATGGAATAGAATCGCAGCCAGGCGCCCGGGGCATCTTCCTCAAAGCGGGCATgg > 7:116169/1‑136 (MQ=255) gCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCcg > 4:58160/1‑135 (MQ=255) gCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGt < 6:407841/133‑1 (MQ=255) gCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGt < 3:189515/133‑1 (MQ=255) gccagccaGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGt < 7:304645/43‑1 (MQ=255) gccagccaGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGt > 8:304645/1‑43 (MQ=255) gccagccaGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGGATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGt > 3:438689/1‑133 (MQ=255) acagccagcCGGCCAGCATTTAGTCGACAAAAACGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTaaa < 6:415264/134‑1 (MQ=255) gcctgccGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTTGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCg < 6:445434/135‑1 (MQ=255) gccagccGGCCAGCAGTGAGGCGACCACAAAGCGGTGGTAGTCGTTGTAGGGGCTGATGGAATAGACGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAACGCGGGAATGGCCGCGGTAGTGGGCCGCGTAAAGCg < 6:299798/135‑1 (MQ=255) ccagccGGCCAGCAGGGAGGCGACCACAAAGCGGTTGTAGTCGTGGTCGGGGCTGAGGGAATCGACGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGc < 8:172573/136‑1 (MQ=255) cagccGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGc < 1:62898/135‑1 (MQ=255) cagccGGCCAGCAGTGAGGCGACAACAACGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGACGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAACGCGGTAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGc < 6:402559/135‑1 (MQ=255) agccGGCCAGGTGGGAGTCGACCACAAAGCGGTTGTCGTCTTTGTAGGGGCTTATGGAAGAGACGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGGTGGCCGCGTAACGCGGCTc < 7:439182/136‑1 (MQ=255) agccGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGccc < 7:99193/80‑1 (MQ=255) agccGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCt > 2:412296/1‑135 (MQ=255) agccGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTc > 7:131547/1‑136 (MQ=255) gccGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTc < 1:407526/135‑1 (MQ=255) gccGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTc < 4:411879/135‑1 (MQ=255) ccGGCCAGCAGTGAGTCGACCACAATGCGGTGGTAGGGGTTTTAGGGGCTGATGGAATAGACGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCg < 5:2834/135‑1 (MQ=255) ccGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCg < 5:84561/135‑1 (MQ=255) ccGGCCAGCAGGGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCg < 3:66668/135‑1 (MQ=255) gCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGAGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGaaa > 5:107741/1‑135 (MQ=255) gCCAGCAGTGAGTCGACCACAAAGCGGGTGTAGTCGTTGTAGGGGCTGATGGAAAAGACGCGCAGCCCGGCGCCCTGGGCAGCTTCCGCAAATCGGGAAGGGCCTCGGTAGTTGGCCGCGTAAAGCGGCTCGCAAc > 8:439182/1‑136 (MQ=255) ccAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACg < 7:208630/136‑1 (MQ=255) ccgccgtgtgtGGACCACATAGCGGTTGTAGTCGTTGTCGGGGCTGGTGGAATTGCAGCGCAGCCAGGCGCCCTGGGCATCTTACTCAAAGCGGTAAAGGGCGCGGTATTTGGCCGCGTTAAGCGGCTCGAAACg < 2:17876/130‑1 (MQ=255) cagtagTGAGTCGACCCCAATGCGGTTGTCGTCGTTGGAGGGGCTGATGGAATAGACGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGATTGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACg < 4:97424/135‑1 (MQ=255) cagcagTGCGTCGACCACAAAGCTGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACg < 4:308455/135‑1 (MQ=255) cagcagTGAGTCGACCACAAAGCGGTGGTAGGGGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACg < 2:149928/135‑1 (MQ=255) cagcagTGAGGCGACCACACAGCGGTTGTCGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACg < 6:218431/135‑1 (MQ=255) cGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTAcg > 7:200607/1‑136 (MQ=255) acaAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTcc > 7:357717/1‑69 (MQ=255) acaAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTcc < 8:357717/69‑1 (MQ=255) acaAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACg > 7:275715/1‑119 (MQ=255) acaAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACg < 8:275715/119‑1 (MQ=255) acaAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTAcgcgcg > 5:348697/1‑135 (MQ=255) acaAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTAcgcgcg > 5:27784/1‑135 (MQ=255) cgCGGTGGTAGTCGTGGTAGGGGCTGATGGAATAGACGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTc < 7:153505/135‑1 (MQ=255) aGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTc < 8:131547/136‑1 (MQ=255) gCGGTTGTAGTGGTTGTAGGGTCTGATGGAATAGTAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTc < 2:122033/135‑1 (MQ=255) gCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCACAGCGGGACTGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTc < 4:156992/135‑1 (MQ=255) gCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCg > 7:259127/1‑136 (MQ=255) gCGGTTGTAGGGGGTGTCGGGGCTGATGGAATAGACGCGCAGCCTGGCGCCCTGGGCATCTTCCTCAACGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTc < 2:186849/135‑1 (MQ=255) gCGGTGGTAGGCGTGGCAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCAGCTTCCTCAAAGCGGGAATGGCCGCGGTAGTGGGCCGCGTAACGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTc < 6:362308/135‑1 (MQ=255) gCGGGTGTCGTCGTGGTAGGGGGTCATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAAGGGCCGCGGTTGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTc < 3:381558/135‑1 (MQ=255) gCGGGTGTAGTCGTTGTAGGGGCTGAGGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTc < 2:50843/135‑1 (MQ=255) gCGGATGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTc < 2:47933/135‑1 (MQ=255) | GCGGTTGATAGCGCGCGGCATAGGAGGGCGCGGCAAACTCGATCTCCAGGCGTTCGGCCTGCACCGGGGTGCCGGCCAGCTCGGCCAACTGGGCCAGCCAGCCGGCCAGCAGTGAGTCGACCACAAAGCGGTTGTAGTCGTTGTAGGGGCTGATGGAATAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGC > KT2440/2266865‑2267128 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |