Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	KT2440	1,524,788	Δ107 bp	coding (38‑144/630 nt)	CJ019_01439 ←	hypothetical protein

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	KT2440	1524788	1524894	107	46 [0]	[0] 44	CJ019_01439	hypothetical protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	KT2440	= 1524787	0 (0.000)	44 (0.630)	35/244	0.5	100%	coding (145/630 nt)	CJ019_01439	hypothetical protein
	?	KT2440	1524895 =	0 (0.000)					coding (37/630 nt)	CJ019_01439	hypothetical protein

CGCTGCAAGTGCTCCAGGCGCTCGGCCTGGTTCAGCAGCAGGCGCAGC‑GGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  KT2440/1524651‑1524787 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcacagGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAGCATCGTGGAAATCCACCACTTTC  >  KT2440/1524895‑1525023                                                                                                                                                                                                                                                                             CGCTGCAAGTGCTCCAGGCGCTCGGACTGGTTCAGCAGCAGGCGCAGC‑GGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGTGGGTACGAGTGAAGTGACGTGGGCACAG                                                                                                                                   >  4:90804/1‑137    TGCATGTGCTCCAGGCGGTCGGCCTGGTTCCGCAGCCGGCGCTGG‑GGGCGCACCTGGCGCAGCCGGGCGTAAGGGGGGTGGGGGGGGGCGGGTTTGTAGGCCAGGGGGGTACGCGTGAAGTGACGTGGGCACAGGCA                                                                                                                                <  4:250656/137‑1     ccacggGCTCCAGGCGCTCGGCCGGGTTACCCAGCAGGCG‑AGCGGGGCGCACCGGGCGCAGCTGGGCGGATGGTGGCTGGGGGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAG                                                                                                                               <  5:196672/131‑1               ccgggGCTCGGCCTGGTTCTGCAGCTGGCGCTGG‑GGGCGAACCTGGCGCAGCCGGGGGTAAGTGGGCTGGGGGGGGGAGGTTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAA                                                                                                                     <  3:97407/132‑1               CAGGCGCTCGGCCTGGTTCAGCAGCAGGCGCAGC‑GGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAA                                                                                                                     >  8:283101/1‑137                  GCGCTCGGCCGGGTGCTGCACCCGGCGCAGC‑GGGCGCACCTGGCGCAGCTGGGCGGAAGGGGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGAC                                                                                                                  <  3:302456/137‑1                    GCTCGGCCTGGTTCAGCAGCAGGCGCAGC‑GGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTG                                                                                                                >  2:91121/1‑137                         gcggGGTTCAGCAGCAGGGGCAGC‑GGGCCCTCCTGGCGCAGCTGGGCGGAAGGGGGCGGGGGGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCT                                                                                                           <  3:385317/133‑1                          CCTGGTTCAGCAGCAGGCGCAGC‑GGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGATGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTC                                                                                                          >  3:60325/1‑137                                       CAGGCGCAGC‑GGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCTACGACAAGACTGGTTCTCGATAGCTTTGATG                                                                                             >  8:304789/1‑137                                       CAGGCGCAGC‑GGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATt                                                                                             >  4:218844/1‑136                                         ggggccGC‑GGGCGCACGTGGCGCAGCTGGGCGTATGGTGGGTGGGGGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTT                                                                                           <  5:117409/131‑1                                         GGCGCTGC‑GGGCTCACCTGGGGCAGCTTGGCGGATGGGGGGTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTT                                                                                           <  1:378158/137‑1                                         GGCGCAGG‑GGGCGCCCCTGGCGCAGCCGGGCGGTAGGGGGCGGGGGGGGGGTGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTT                                                                                           <  5:130553/137‑1                                         GGCGCAGC‑GGGCGCACGTGGCGAAGATGGGGTTAAGGTGGCGGGGCGGGGTAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTT                                                                                           <  4:235444/137‑1                                           CGCAGC‑GGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGC                                                                                         >  6:190381/1‑137                                                  GGGCGCACCGGGCGCAGCCGGGCGGAAGGGGGCTGGGGGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCC                                                                                   <  3:82516/137‑1                                                    GCGCACCGGGCGCCGCTGGGCGGATGGGGGCGGGGGGGGGGCGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTT                                                                                 <  5:175386/137‑1                                                      cCACGTGGCGCAGCAGTGCGGAATGGGGGTGGGGGGGGTCGGGTTTGTAGGCGATGGGGGTTCGCGTGAAGTGACGTGGGCACAGGCATCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGA                                                                               <  1:420563/136‑1                                                         ccgGGCGCAGGAGGGCGGCCGGGGGGTGGGGGGGGGCGGGTTGGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACT                                                                            <  2:276442/134‑1                                                                    cGGGCGTAAGGGGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATG                                                                 <  1:57175/136‑1                                                                    AGGGCGGAACGTGCGTGGGCGGGGGAGGGTTTGTAGGCCAGGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATG                                                                 <  2:334052/137‑1                                                                       GCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCC                                                              >  7:159644/1‑137                                                                                    gcGCGGGGGAGGGTTTGTAGGACATGGGGGAACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTATCATGTTGCCAAGCCTTGAGCTCAGTGAAAATGCCCCGATCTAAAACAG                                                 >  1:464822/3‑137                                                                                    GGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAG                                                 >  1:147396/1‑137                                                                                     GGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGG                                                >  8:279009/1‑137                                                                                      ggGGGGGCGGGTTTTTAGGCCATGGGGGTACGCGGGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGC                                               <  8:159644/135‑1                                                                                            GAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGC                                         >  7:213604/1‑137                                                                                            GAGGGGTTGTAGGCAATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGC                                         <  8:318986/137‑1                                                                                                tgTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGTCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAA                                     <  6:34129/135‑1                                                                                                tTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAA                                     <  2:120522/136‑1                                                                                                GTTTGTAGGCCAGGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAA                                     <  5:264809/137‑1                                                                                                   TGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCC                                                             <  7:331812/110‑1                                                                                                   TGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCC                                                             >  8:331812/1‑110                                                                                                    GTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGC                                 >  4:12090/1‑137                                                                                                            TGGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAG                         <  5:471952/137‑1                                                                                                             GGGGGTACGCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAGC                        >  1:52851/1‑137                                                                                                                     GCGTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAGCATCGTGGA                >  6:164371/1‑137                                                                                                                       GTGAAGTGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAGCATCGTGGAAA              >  2:422485/1‑137                                                                                                                             TGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTA                                                       >  6:200043/1‑90                                                                                                                             TGACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTA                                                       <  5:200043/90‑1                                                                                                                              GACGTGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAGCATCGTGGAAATCCACCA       >  6:206741/1‑137                                                                                                                                  TGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTT                                                                                           <  2:244096/49‑1                                                                                                                                  TGGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTT                                                                                           >  1:244096/1‑49                                                                                                                                   GGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAGCATCGTGGAAATCCACCACTTTC  <  1:422485/137‑1                                                                                                                                                                                                                                                                             CGCTGCAAGTGCTCCAGGCGCTCGGCCTGGTTCAGCAGCAGGCGCAGC‑GGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  KT2440/1524651‑1524787 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcacagGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAGCATCGTGGAAATCCACCACTTTC  >  KT2440/1524895‑1525023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.