Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | KT2440 | 4,245,145 | 0 | A | C | 45.8% | 27.8 / 14.9 | 62 | L178R (CTG→CGG) | CJ019_03982 | Crotonyl‑CoA hydratase |
Reads supporting (aligned to +/- strand): ref base A (10/22); new base C (16/11); total (26/36) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.84e-02 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
CGCGTATCAGCCGCTTGGTCTGCGCATAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCATCGGGGCTGTAGCCCATGCTGGTGTAGCCGGC > KT2440/4245020‑4245272 | cgcgTATCAGCCGCTTGGTCTGCGCATAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCTAt < 6:104245/135‑1 (MQ=255) cgcgTATCAGCCGCTTGGTCTGCGCATAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGAt < 7:201525/135‑1 (MQ=255) cgcgTATCAGCCGCTTGGTCTGCGCATAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGAt < 1:23626/135‑1 (MQ=255) cgcgTATCAGCCGCTTGGTCTGCGCATAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGAt < 5:63072/135‑1 (MQ=255) cgcgTATCAGCCGCTTGGTCTGCGCATAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGAt < 3:17104/135‑1 (MQ=255) cgcgTATCAGCCGCTTGGTCTGCGCATAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTACTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGAt < 5:297898/135‑1 (MQ=255) aTCAGCCGCTTGGTCTGCGCATAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACGTCGCTGCCCAACCCGGCGGCCCCGGCGCGATCGgcg > 2:165706/1‑135 (MQ=255) cTTGGTCTGCGCATAGGCCAAGGTCGGGCCATTGGCCACGCGCCCCGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCAGCCCAAACCGGCGGCCCGGGCCCGCTCGGCCCCCccca > 4:32834/1‑134 (MQ=255) tCTGCGCTTTGGCTATGGGCGGGCCATTGGCCGGGCGCCGGGCATGTGCGGCGGCAAGGGCAGGCAAGTGCGGGGCGGCGCAGACTTCGCTGACCAACCCGGGGGCCAGGGCGCGAGCGGCGCCCCACAACtcgt < 8:240763/135‑1 (MQ=255) ggcgcTTCGGCGAAGGTCGGGCCATTGGCCCGGCGCCCGGCAAGTGCGGCGGCAACGGCAGGAAACTGCGCGGCGGCGAAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGATCGGCGCCCCACAACtcgtcg < 5:142114/134‑1 (MQ=255) aTAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCCGGGCGCGGTAGGCGCCCCCCAACACGGCGAggg > 5:63030/1‑133 (MQ=255) aTAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCCGGGCGCGCTCGGCGCCCCCCCACTCGGCGAGGaa > 4:240950/1‑135 (MQ=255) aTAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCCCGGCGCGCTCGGCGCCCCCCCACGCGGCGAggca > 7:276160/1‑133 (MQ=255) aGGCGATGGGCGGGCCATTGCCCAGGCGCCCGGCCAGTGCGGCGGAAACGGCAGGCAACTGCGCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAAca < 6:63030/135‑1 (MQ=255) cGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCCGGGCGCGATCGGCGCCCCCCAACTCGTCGAGGAAcagca > 7:190557/1‑135 (MQ=255) gAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGCCTTCGCTGACCAACCCGGCGGCCCGGGCGCGATCGGCGCCCCACCACTCGTCGAGGCAcagcag > 5:122117/1‑135 (MQ=255) gAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGCTAGGCGCCCCCCAACACGTCGAGGCAcagcag > 4:28476/1‑135 (MQ=255) gTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCCGGGCGCGATCGGCGCCCCCCCACGCGGCGAGGCACACCAGgcgc > 1:204882/1‑135 (MQ=255) gTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCCGGGCCCGCTCGGCG‑CCCACAACACGGCCAGGAACACCACgcgca > 1:235246/1‑134 (MQ=255) gTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGCTCGGCGCCCCACAACTCCTCGAGGGACACCAGgcgc > 3:138812/1‑135 (MQ=255) gTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGAt > 4:228237/1‑100 (MQ=255) gTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGAt < 3:228237/100‑1 (MQ=255) cGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGCCTTCGCTGACCAACCCGGCGGCCCGGGCGCGCTCGGCGCCCCCCCACGAGTGGAGGGACCCCAGgcgcgt > 8:298061/1‑133 (MQ=255) cATTGGCCCGGCGCCCGGCCAGTGCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTGCGCTGACCAACCCGGCGGCCCGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCt < 3:240950/135‑1 (MQ=255) cATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGCCCAACCCGGCGGCCAGGGCGCGATCGGCGGCCCCCCACGCGTCGCGGGACCGCCGGCGCGTGGccg > 4:33088/1‑134 (MQ=255) cATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCCGGGCGCGGTGGGCGCCCCCCCACTCGGCGCGGCACCGCAGGCGCGTGGccg > 1:244201/1‑134 (MQ=255) cATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCCGGGCGCGCTCGGCGCCCCCCAACTCGTCGCGGAACAGCCGGCGCGTGGGCt > 7:183916/1‑135 (MQ=255) cATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCCCGGCGCGCTCGGGGCCCCCCCACGCGTCGCGGAACACCCGGCGCGTgggcg > 3:217088/1‑132 (MQ=255) cATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGCTCGGCGCCCCCCCACTCGTCGAGGAACAGCAGGCGCGTGGCCt > 5:142590/1‑135 (MQ=255) cATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCACGGCGCGCTCGGCCCCCCACAAATCGTCGTGCGACAGCAGGCCCTTGGACt > 6:227300/1‑135 (MQ=255) cATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCACGGCGCCATCGGCGCCCCACACCACGTCGAGGCACACCCCGCCCGTGGCCt > 5:144899/1‑135 (MQ=255) gcgcCCGGCCAGTGCGGCGGCAACGGCAGGAAACTGCGCGGCGGCGCAGACTTCGCTGACCAACCCGGCGGCCCGGGCGCGAGCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGcc < 8:66486/135‑1 (MQ=255) gccccgggCCTGTGCGGGGGCACCGCCCGCCACCGGCGCGCCGGCCCAGACTGCGCCCACCACCCCGGCGGCCCGGGCGCGAGCGGCCCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGcc < 6:5206/129‑1 (MQ=255) cccGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCCGGGCGCGCTCGGCGCCCCCCAACTCGTCGAGGAACAGCAGGCGCGTGGCCGGGTCGCTGCCGa > 1:9564/1‑134 (MQ=255) tgtgcggcggCAACGGCCGGCACCGGCGCGGCGGCGCAGACTGCGCTGACCACCCCGGCGGCCCGGGCGCGAGCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGt < 6:234481/131‑1 (MQ=255) tgTTCGGCGGCAACGGCAGGCAACTGCGCGGCGTCCCAGACTTCGCTGACCACCCCGGCGGCCTGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGt < 5:87591/134‑1 (MQ=255) aGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTGCGCTCCCCACCCCGGCGCCCAGGGCGCGAGCGCCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGt < 2:58211/135‑1 (MQ=255) aGTGCGGCGGCAACGGCAGGCAACTGCTCGGCGGCGCAGACTTCGCGGACCACCCCGGCGGCCCGGGCGCGAGCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGt < 8:190557/135‑1 (MQ=255) ggcggcAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCCGGGCGCGCTCGGCGCCCCCCCACGCGTCGCGGGACACCCGGCGCGTGGCCGGCTCGCTGCGGGTCAGGCGGGGccg > 6:63159/1‑133 (MQ=255) ggcggcAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGCACGGCGCCCCCCAACGCGGGGCGGCACCGCCGGCGCTTTGGCGGCTCGCTGCCGCTCAGCCGTgggcg > 8:43595/1‑132 (MQ=255) cAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGATCGGCGCCCCCCCACACGTCGCGGGACAGCAGGCGCTTGGCCTGCACGCAGCCCCTCACCCCTGGCAGGTGcc > 3:63286/1‑135 (MQ=255) caggcaACGGCGCGGCGGCGCAGACTTCGCTGACCACCCCGGCGGCCAGGGCGCGAGCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTgg < 4:90224/135‑1 (MQ=255) cggcaACGGCGCGGCGGCCCAGACTGCGCTCCCCACCCCGGCGGCCCGGGCGCGAGCGGCCCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGgc < 5:149573/134‑1 (MQ=255) agccaACTGCGCGGCGCCGCAGACTGCGCTCCCCAACCCGGCGGCCAGGGCGCGAGCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGgc < 2:32120/132‑1 (MQ=255) gcaACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCCGGGCGCGCTCGGCGCCCCCCAACTCGTCGAGGTACCGCCGGCGCGTGGGCTGCGCGCGGGCGCTCACCCGGGGGCGGGGCCCGCGGgcgc > 5:89256/1‑135 (MQ=255) ccTGCGCGTCGGCGCAGACTGCGCGGACCAACCCGGCGGCCCGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCTGATCAGCCGTGGCAGGTGCCAGCTGGCGCCgg < 5:63159/134‑1 (MQ=255) acggCTCGCCGGCGCAGACTTCGCTCACCACCCCGGCGGCCAGGGCCCTATCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCgg < 8:64470/132‑1 (MQ=255) aCTGCTAGTCGGCGAATACTTCGCTGACAAACCCGGCGGCCAGGGCGCTATCGGCGCCCCACAACTCGTCTAGGAACAGCAGGCGCTTGGCCTGCCCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCgg < 8:32703/135‑1 (MQ=255) tGCGCGTCGGCGCACACTTCGCGGCCCACCCCGGCGGCCAGGGCGCGAGCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCa < 4:70176/135‑1 (MQ=255) tGCGCGGCGGCGCTGACTGCGCTGACCACCCCGGCGCCCCGGGCGCGAGCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCa < 6:118977/135‑1 (MQ=255) tGCGCGGCGGCGCAGACTCCGCTGACCAACCCGGCGGCCAGGGCGCGAGCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCa < 2:204882/135‑1 (MQ=255) gtcgGCGCAGACTGCGCGGACCAACCCGGCGGCCAGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCATCggg < 6:69981/135‑1 (MQ=255) ggcgGCGCAGACTTCGCGCACCAACCCGGCGGCCAGGGCGCGAGCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCATCggg < 3:283952/133‑1 (MQ=255) ggcgGCGCAGACTGCGCGGCCCACCCCGGCGGCCAGGGCGCGAGCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCATCggg < 8:86134/133‑1 (MQ=255) gcgccgcAGACTTCGCTGACCAACCCGGCGGCCAGGCCGCGAGCGCCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCATCgggg < 2:213075/131‑1 (MQ=255) cgcAGACTTCGCTGACCAACCGGGCGGCCTGGGCGCGAGGGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCATCGGGGCTGt < 3:215235/135‑1 (MQ=255) gaagagTTCGCTGACAAACCCGGCGGACAGGGCGCGATCGGCGCACCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTTCCGATCAGCCGTGGCTGGTGCCAGCTGTCGCCGGCATCGGGGCTGTa < 8:224035/133‑1 (MQ=255) agttCGCTGACCACCCGGGCGGCCCGGGGGCGAGGGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCATCGGGGCTGTAGccc < 2:28215/133‑1 (MQ=255) ccACCCGGGCGGCCGGGGGGCGAGCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCATCGGGGCTGTAGCCCATGCTGgtgt < 7:204013/135‑1 (MQ=255) ccACCCCGGCGGCCCGGGCGCGAGCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCATCGGGGCTGTAGCCCATGCTGgtgt < 8:276160/135‑1 (MQ=255) ccACCCCGCCGGCCCGGGCGCGAGCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCATCGGGGCTGTAGCCCATGCTGgtgt < 6:89256/135‑1 (MQ=255) ggcggcCAGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCATCGGGGCTGTAGCCCATGCTGGTGTTGCCGGc > 3:60963/1‑135 (MQ=255) | CGCGTATCAGCCGCTTGGTCTGCGCATAGGCGAAGGTCGGGCCATTGGCCAGGCGCCCGGCCAGTTCGGCGGCAACGGCAGGCAACTGCTCGTCGGCGCAGACTTCGCTGACCAACCCGGCGGCCAGGGCGCGATCGGCGCCCCACAACTCGTCGAGGAACAGCAGGCGCTTGGCCTGCTCGCTGCCGATCAGCCGTGGCAGGTGCCAGCTGGCGCCGGCATCGGGGCTGTAGCCCATGCTGGTGTAGCCGGC > KT2440/4245020‑4245272 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |