New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | KT2440 | = 5074639 | 83 (1.030) | 3 (0.040) +TCG |
3/254 | 8.3 | 3.6% | coding (726/1236 nt) | CJ019_04774 | Aspartate kinase |
? | KT2440 | 5074640 = | 83 (1.030) | coding (725/1236 nt) | CJ019_04774 | Aspartate kinase | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
GGATCTTGAAGGCCACGCCCGGGGTATCCGGCACGCCGCGAATGGTCAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > KT2440/5074524‑5074639 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCA > KT2440/5074640‑5074688 ||| GGATCTTGAAGGCCACGCCGGGGGTATCGGGTACGCCACGGATGGTCAGCTTGGCTTCGTCGCGGTTGAAGGCGATGCCGGAGATGATCGGCTGTTCCATGGATTCCTCTTCATCATCGATAGTAATGAGGGTGCCC < 8:228212/137‑1 AGCTTGGCTTCGTCGCGGTTGAAGGCGATGCCGGAGATGATCGGCTGTTCCATGGATTCCTCTTCATCATCGATAGTAATGAGGGTGCCCGGACCCTCCTGGAAGCTGTGCAGCACGCGCA > 1:212938/1‑121 AGCTTGGCTTCGTCGCGGTTGAAGGCGATGCCGGAGATGATCGGCTGTTCCATGGATTCCTCTTCATCATCGATAGTAATGAGGGTGCCCGGACCCTCCTGGAAGCTGTGCAGCACGCGCA < 2:212938/121‑1 ||| GGATCTTGAAGGCCACGCCCGGGGTATCCGGCACGCCGCGAATGGTCAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > KT2440/5074524‑5074639 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCA > KT2440/5074640‑5074688 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |