New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? KT2440 = 507463983 (1.030)3 (0.040)
+TCG
3/254 8.3 3.6% coding (726/1236 nt) CJ019_04774 Aspartate kinase
?KT2440 5074640 = 83 (1.030)coding (725/1236 nt) CJ019_04774 Aspartate kinase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGATCTTGAAGGCCACGCCCGGGGTATCCGGCACGCCGCGAATGGTCAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  KT2440/5074524‑5074639
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCA  >  KT2440/5074640‑5074688
                                                                                                                    |||                                                 
GGATCTTGAAGGCCACGCCGGGGGTATCGGGTACGCCACGGATGGTCAGCTTGGCTTCGTCGCGGTTGAAGGCGATGCCGGAGATGATCGGCTGTTCCATGGATTCCTCTTCATCATCGATAGTAATGAGGGTGCCC                                 <  8:228212/137‑1
                                               AGCTTGGCTTCGTCGCGGTTGAAGGCGATGCCGGAGATGATCGGCTGTTCCATGGATTCCTCTTCATCATCGATAGTAATGAGGGTGCCCGGACCCTCCTGGAAGCTGTGCAGCACGCGCA  >  1:212938/1‑121
                                               AGCTTGGCTTCGTCGCGGTTGAAGGCGATGCCGGAGATGATCGGCTGTTCCATGGATTCCTCTTCATCATCGATAGTAATGAGGGTGCCCGGACCCTCCTGGAAGCTGTGCAGCACGCGCA  <  2:212938/121‑1
                                                                                                                    |||                                                 
GGATCTTGAAGGCCACGCCCGGGGTATCCGGCACGCCGCGAATGGTCAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  KT2440/5074524‑5074639
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCA  >  KT2440/5074640‑5074688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.