| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | KT2440 | 2172773 = | 23 (0.410) | 9 (0.160) | 8/232 | NT | 28.3% | intergenic (‑50/+90) | CJ019_02061/CJ019_02062 | hypothetical protein/hypothetical protein |
| ? | KT2440 | = 3965293 | NA (NA) | intergenic (+31/‑349) | CJ019_03744/CJ019_00572 | IS66 family transposase ISPpu14/IS110 family transposase ISPpu10 | |||||
TCCCAAGAGCCTAACTCTTGACCGCTTGGAGTCCTGATTCAAATAGGCACGCGATTCGCGCCCTATAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < KT2440/2172841‑2172773‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCCCGATCTCACTGGCCCGCTGTGTTGGCAACCGAGTTAGCACATCTTTGAGATAGGCATACGGATCATG < KT2440/3965293‑3965161 TCCCAAGAGCCTAACTCTTGACCGCTTGGAGTCCTGATTCAAATAGGCACGCGATTCGCGCCCTATAGAGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCC < 2:325581/135‑1 AACTCTTGACCGCTTGGAGTCCTGATTCAAATAGGCACGCGATTCGCGCCCTATAGAGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCCCGATCTCACTGG > 3:3551/1‑135 AACTCTTGACCGCTTGGAGTCCTGATTCAAATAGGCACGCGATTCGCGCCCTATAGAGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCCCGATCTCACTGG > 4:384872/1‑135 ACTCTTGACCGCTTGGAGTCCTGATTCAAATAGGCACGCGATTCGCGCCCTATAGAGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCCC < 3:6349/123‑1 ACTCTTGACCGCTTGGAGTCCTGATTCAAATAGGCACGCGATTCGCGCCCTATAGAGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCCC > 4:6349/1‑123 GGAGTCCTGATTCAAATAGGCACGCGATTCGCGCCCTATAGAGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCCCGATCTCACTGGCCCGCTGTGTTGGCA > 6:240812/1‑135 GAGTCCTGATTCAACTAGGCACGCGATTCGCGCCCTATAGAGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCCCGATCTCACTGGCCCGCTGTGTTGGC < 2:228837/133‑1 CACGCGATTCGCGCCCTATAGAGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCCCGATCTCACTGGCCCTCTGTGTTGGCAACCGAGTTAGCACATCTTTG < 7:116875/135‑1 ATTCGCGCCCTATAGAGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCCCGATCTCACTGGCCCGCTGTGTTGGCAACCGAGTTAGCACATCTTTGAGATAG > 4:135017/1‑135 TATAGAGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCCCGATCTCACTGGCCCGCTGTGTTGGCAACCGAGTTAGCACATCTTTGAGATAGGCATACGGAT < 5:238311/135‑1 TATAGAGTAAGCGTCCGCCCAACTCAACTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCCCGATCTCACTGGCCCGCTGTGTTGGCAACCGAGTTAGCACATCTTTGAGATAGGCATACGGAT < 5:208217/135‑1 AGAGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCCCGATCTCACTGGCCCGCTGTGTTGGCAACCGAGTTAGCACATCTTTGAGATAGGCATACGGATCA < 4:3551/134‑1 GAGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCCCGATCTCACTGGCCCGCTGTGTTGGCAACCGAGTTAGCACATCTTTGAGATAGGCATACGGATCATG > 2:276557/1‑135 AGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCTGCAGCT < 8:261125/64‑1 AGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCT > 7:261125/1‑64 TCCCAAGAGCCTAACTCTTGACCGCTTGGAGTCCTGATTCAAATAGGCACGCGATTCGCGCCCTATAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < KT2440/2172841‑2172773‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGTAAGCGTCCGCCCAACTCACCTTGCGTAAGTTAGGCAGGCACCCACTGATGTGGCAGCAGCTGCCCGATCTCACTGGCCCGCTGTGTTGGCAACCGAGTTAGCACATCTTTGAGATAGGCATACGGATCATG < KT2440/3965293‑3965161 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |