New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	KT2440	5066463 =	61 (1.100)	5 (0.090)	4/234	NT	7.6%	coding (328/684 nt)	CJ019_04758	hypothetical protein
	?	KT2440	= 5397613	NA (NA)					coding (570/573 nt)	dpkA_2	Delta(1)‑pyrroline‑2‑carboxylate/Delta(1)‑piperi deine‑2‑carboxylate reductase

CGCTACCGTGAGACTCGAAAGCTCCGGGCTCATGAATACCTGGTTGCATGACTTCAGAGTGGCCTATACACCGCTGCAAGCCAACCTGGTCGCAGCGAGCTTAATCCAGTCGATTATCCATTTGATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  KT2440/5066590‑5066463 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTAC  <  KT2440/5397613‑5397493                                                                                                                                                                                                                                                           CGCTACCGTGAGACTCGAAAGCTCCGGGCTCATGAATACCTGGTTGCATGACTTCAGAGTGGCCTATACACCGCTGCAAGCCAACCTGGTCGCAGCGAGCTTAATCCAGTCGATTATCCATTTGATTGGTAAGGG                                                                                                                    >  7:266667/1‑135                                                                           TGCAAGCCAACCTGGTCGCAGCGAGCTTAATCCAGTCGATTATCCATTTGATTGGTTAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAG                                                >  5:199879/1‑129                                                                           TGCAAGCCAACCTGGTCGCAGCGAGCTTAATCCAGTCGATTATCCATTTGATTGGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAG                                                <  6:199879/129‑1                                                                           TGCAAGCCAACCTGGTCGCAGCGAGCTTAATCCAGTCGATTATCCATTTGATTGGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCAGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCC                                          >  3:315558/1‑135                                                                                                                   TATCCATTTGATTGGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTAC  <  8:266667/135‑1                                                                                                                                                                                                                                                           CGCTACCGTGAGACTCGAAAGCTCCGGGCTCATGAATACCTGGTTGCATGACTTCAGAGTGGCCTATACACCGCTGCAAGCCAACCTGGTCGCAGCGAGCTTAATCCAGTCGATTATCCATTTGATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  KT2440/5066590‑5066463 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTAC  <  KT2440/5397613‑5397493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.