Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | KT2440 | 1,720,951 | T→G | 33.4% | D90A (GAC→GCC) | plsB ← | Glycerol‑3‑phosphate acyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | KT2440 | 1,720,951 | 0 | T | G | 33.4% | 56.1 / 9.2 | 47 | D90A (GAC→GCC) | plsB | Glycerol‑3‑phosphate acyltransferase |
Reads supporting (aligned to +/- strand): ref base T (19/11); new base G (3/14); total (22/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.38e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CCGGGGTCTGGCCCCAGAACACGCTGACAGGAATGATCTGCGCATCTTCTTCGGCATGCTGGCTGACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTA‑GAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGG > KT2440/1720817‑1721080 | ccGGGGTCTGGCCCCAGAACACGCTGACAGGAATGATCTGCGCATCTTCTTCGGCATGCTGGCTGACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGt < 4:32747/135‑1 (MQ=255) gggTCTGGCCCCAGAACACGCTGACAGGAATGATCTGCGCATCTTCTTCGGCATGCTGGCTGACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCgg < 1:362036/135‑1 (MQ=255) gggTCTGGCCCCAGAACACGCTGACAGGAATGATCTGCGCATCTTCTTCGGCATGCTGGCTGACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCgg < 4:292074/135‑1 (MQ=255) gggTCTGGCCCCAGAACACGCTGACAGGAATGATCTGCGCATCTTCTTCGGCATGCTGGCTGACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCgg < 3:87229/135‑1 (MQ=255) gggTCTGGCCCCAGAACACGCTGACAGGAATGATCTGCGCATCTTCTTCGGCATGCTGGCTGACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCgg < 7:154413/135‑1 (MQ=255) ggTCTGGCCCCAGAACACGCTGACAGGAATGATCTGCGCATCTTCTTCGGCATGCTGGCTGACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCggg < 5:361541/135‑1 (MQ=255) gTCTGGCCCCAGAACACGCTGACAGGAATGATCTGCGCATCTTCTTCGGCATGCTGGCTGACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCgggg < 4:217893/135‑1 (MQ=255) aaCACGCTGACAGGAATGATCTGCGCATCTTCTTCGGCATGCTGGCTGACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTa‑gaa > 4:282706/1‑134 (MQ=255) acacGCTGACAGGAATGATCTGCGCATCTTCTTCGGCATGCTGGCTGACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCgggg < 3:218071/122‑1 (MQ=255) acacGCTGACAGGAATGATCTGCGCATCTTCTTCGGCATGCTGGCTGACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCgggg > 4:218071/1‑122 (MQ=255) cacGCTGACAGGAATGATCTGCGCATCTTCTTCGGCATGCTGGCTGACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTA‑gaagaa > 5:319967/1‑135 (MQ=255) cTGACTGTATTGAGCGGCGCAGCTTCTGCGGCCGGCGGGCTGCCGGCAGCCACCAGGCGCGCGAGCGGGGGGGGGGCGCCGCTTTTGGCCGGGCGGCCGCGCCAGTCCGGGTGGGGGGTCAGGTA‑GAAGAAcgcg < 4:304230/135‑1 (MQ=255) cTGACAGGAATGATCTGCGCATCTTCTTCGGCATGCTGGCTGACGGCAGCCACCAGGCGCTCGCGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTA‑GAAGAAcgcg < 6:319967/135‑1 (MQ=255) cTGACAGGAATGATCTGCGCATCTTCTTCGGCATGCTGGCGGACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGGCCTGGCGCCCGAGCCAGTCCGGGTCGGGGGTCAGGTA‑GAAGAAcgcg < 2:48256/135‑1 (MQ=255) gACAGGAATGATCTGCGCATCTTCTTCGGCATGCTGGCTGACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTA‑GAAGAACgcggc > 8:26290/1‑135 (MQ=255) gACAGGAATGATCTGCGCATCTTCTTCGGCATGCTGGCTGACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCGTTTGTACTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGCTA‑CAAGAAcgccgc > 2:83018/1‑135 (MQ=255) gAATGATCTGCGCATCTTCTTCGGCATGCTGGCTGACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGAGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTA‑GAAGAACGCGGCGGGtt > 8:252378/1‑135 (MQ=255) gcgcATCTTCTTCGGCATGCTGGCTGACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTA‑GAAGCACGCGGCGGGTTCCTGCAGTg > 3:237773/1‑135 (MQ=255) cATCTTCTGCGGCATCCTGGCTGCCGGCCGCCACCAGGCGCGCGCGCGGGGGGGGGGCGCCGCTTTTGCCCTGGCGGCCGACCCCGTCGGGGGCGGGGGACAGTTA‑GAAGAACGCGGCGGGTTCCTGCAGTGGGc < 4:168823/135‑1 (MQ=255) aTCTTCTTCGGCATGCTGGCTGACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGCGCCAGTCCGGGTCGGGGGTCAGGTA‑GAAGAACGCGGCGGGTTCCTGCAGTGGGcc > 2:45266/1‑135 (MQ=255) aTCTTCTTCGGCATGCTGGCTGACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTA‑GAAGAACGCGGCGGGTTCCTGCAGTGGGcc > 4:105732/1‑135 (MQ=255) aTCTTCTTCGGCATGCTGGCTGACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTA‑GAAGAACGCGGCGGGTTCATGCAGTGGGcc > 4:150604/1‑135 (MQ=255) aTCTTCTTCGGCATGCTGGCTGACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTA‑GAAGAACGCGGCGGGGTCCTGCAGTGGGcc > 2:289277/1‑135 (MQ=255) aTCTTCTTCGGCATGCTGGCTGACGGCAGCCACCAGGCGCTCGAGCGAGGGAGGGGCGCCGCTTTTTTACTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTA‑GAAGAACGCGGCGGGTTCCTGCAGTTGGc > 5:361826/1‑134 (MQ=255) ggctgACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGCGCCAGTCCGGGGCGGGGGTGCGGTT‑GAAGAACGCGGCGGGTTCCTGCAGTGGGCCGCCGGCTACCGgcagcc > 5:310220/1‑134 (MQ=255) ggctgACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGCGCCAGGCCCGGGCGGGGGGCAGGTA‑GAAGAACGCGGCGGGGTCCTGCACTGGGCCGACGGCTACCCgccgca > 5:119361/1‑135 (MQ=255) ggctgACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTA‑GAAGACCGCGGCGGGTTCCTGCAGGGGGCCGACGGCTACCGgcagca > 1:263278/1‑135 (MQ=255) ggctgACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCGGGCGGCCGCGCCCGGCCGGGGCGGGGGTCATGTA‑GAAGAAAGCGGCGGGGTCCTGCAGTGGTACGACGGCTACCGgcagca > 7:312294/1‑135 (MQ=255) gctgACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTA‑GAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCAc > 4:158333/1‑135 (MQ=255) cGGCAGCCACCCGGCGCGCGCGCGGGGGCGGGGCGCCGCTTTGGTCCGGGCGGCCGAGCCAGTCCGGGTCGGGTGTCAGGTA‑CAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGgc < 7:184/135‑1 (MQ=255) aGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTA‑GAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCgg > 7:199351/1‑135 (MQ=255) cccggCGCGCGGGGGGGGGCGGGGCGCCGCTGTGGCCCGGGCGGCGGAGCCCGGCGGGGGGGGGGGGC‑GGTACGACCACCGCGGCGGGTTCCTGCAGGGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGcc < 2:375244/132‑1 (MQ=255) gCGTGGGCGGGGCGCCGCTTTTGTACTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGGA‑GAAGAACCCGGCGGGGTGCTGCCGTGGGCCGCCGGCTACCGGCAGCCCCGGGCGCGGCAGCCCCGCCATGGTGc > 4:11605/1‑135 (MQ=255) gggggggcgCCGCTTTTGCCCGGGCGGCCGCGCCAGGCCGGGGCGGGGGGCAGGTA‑GACGACCGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCg < 4:88494/132‑1 (MQ=255) gcggggcgCCGCTTTTGTCCGGGCGGCCGAGCCAGTCCGGGGCGGGGGGCAGGTA‑GAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGt < 7:133142/135‑1 (MQ=255) gcggggcgCCGATTTTGTCCTGGCGGCCGAGCCAGGGCGGGGCGGGGGGCAGGTA‑GAACCACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGt < 8:330052/135‑1 (MQ=255) ggcgCGGTTTTTGGCCGGGCGGCCGACCCTGGCGGGGGGGGGGGCCTGGAA‑CACCACCGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTc < 6:310220/135‑1 (MQ=255) ggcgCGGGTTTGGCCCGGGGGGCGGTGCCCGTCGGGGGCGGGGGGCCGGTA‑GACCACCGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTc < 3:323035/135‑1 (MQ=255) ggcgCCGCTTTTGTCCTGGCGGCCGCGCCCGTCCGGGGCGGGGGGCCGGTA‑GAAGACCGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTc < 5:146131/135‑1 (MQ=255) gccgcTTTTGTCCTGGCGGCCGCGCCAGTCCGGGTCGGGGGTCAGGTA‑GAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGTGGCCGCCCCCCCGTGGTGCACTCGTGGTCgcg > 6:376563/1‑133 (MQ=255) cTTTTGCCGGGGGGGCCGAGCCTGCCGGGGGGGGGGGGCTGGTA‑GAAGACCGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACg < 5:340334/135‑1 (MQ=255) ttGGCCGGGCGGCGGCGCCCGGCGGGGGCGGGGGTCAGGTA‑CACCACCGCGGCGGGGTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGc < 1:92068/134‑1 (MQ=255) ggcCGCGCCTGGCCGGGGGGGGGGTCTGGTC‑GAAGACCGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGa < 8:258719/135‑1 (MQ=255) gcCGAGCCAGTCCGGGTCGGGGGTCAGGTA‑GAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTgcg > 5:270859/1‑133 (MQ=255) gcCGAGCCAGTCCGGGTCGGGGGTCAGGTA‑GAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAg > 3:232298/1‑135 (MQ=255) ccAGGCCGGGGCGGGGGTATGGTA‑GAAGACCGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCggg < 4:119895/135‑1 (MQ=255) ccGGGGCGGGGGTCAGGTA‑GAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAgg < 3:374852/135‑1 (MQ=255) ccGGGGCGGGGGCCAGGTA‑GAAGACCGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAgg < 1:289277/135‑1 (MQ=255) | CCGGGGTCTGGCCCCAGAACACGCTGACAGGAATGATCTGCGCATCTTCTTCGGCATGCTGGCTGACGGCAGCCACCAGGCGCTCGAGCGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTA‑GAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGG > KT2440/1720817‑1721080 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |