| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | KT2440 | 4,029,454 | A→C | 23.4% | D287A (GAC→GCC) | mcpU_3 → | Methyl‑accepting chemotaxis protein McpU |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | KT2440 | 4,029,454 | 0 | A | C | 23.4% | 163.9 / 6.1 | 109 | D287A (GAC→GCC) | mcpU_3 | Methyl‑accepting chemotaxis protein McpU |
| Reads supporting (aligned to +/- strand): ref base A (32/47); new base C (18/11); total (51/58) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.31e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 109 total aligned reads displayed.
AGCCTGCAGGCACTGAGCCAGGAGGCCAGCCGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGACGCCCAGCCCTGGG > KT2440/4029324‑4029585 | cTGCAGGCACTGAGCCAGGAGGCCAGCCGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTa < 7:136431/135‑1 (MQ=255) gCAGGCACTGAGCCAGGAGGCCAGCCGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCCAGCTGGCCCCGCGCTTCGCCCAGGTAGa > 4:351452/1‑135 (MQ=255) aGGCACTGAGCCAGGAGGCCAGCCGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCCAGCTGGCCCAGCGCGTCGACCAGGTAGAcc > 2:29464/1‑135 (MQ=255) aGGCACTGAGCCAGGAGGCCAGCCGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCCGCGCGTCGACCAGGGAGAcc > 7:319331/1‑135 (MQ=255) aGGCACTGAGCCAGGAGGCCAGCCGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGCCCAGGTAGAcc > 7:25447/1‑135 (MQ=255) aGGCACTGAGCCAGGAGGCCAGCCGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCGGGCCCCGCGCGTCGACCAGGTAGccc > 5:89563/1‑135 (MQ=255) gCACTGAGCCAGGAGGCCAGCCGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGCCCCg > 7:376386/1‑135 (MQ=255) gCACTGAGCCAGGAGGCCAGCCGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTCGCTACAGCGCCGATGCCAGCAAACTGGCCCCGCGCATCGCCCAGGTAGcccct > 8:103230/1‑134 (MQ=255) cACTGAGCCAGGAGGCCAGCCGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGGAGACCCGa > 8:154896/1‑135 (MQ=255) cACTGAGCCACGAGGCCAGCCGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGAAGGCTACCTCGCCGATGCCAGCAAGCAGGCCCAGCGCGTCGACGCGGTAGAACCGa > 7:275047/1‑135 (MQ=255) gAGCCAGGAGGCCAGCCGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATTCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGAcc > 8:317302/1‑133 (MQ=255) gCCAGGAGGCCAGCCGCAGCCTCTACGACGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAg < 4:384467/135‑1 (MQ=255) ccAGGAGGCCAGCCGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTTCAGCGCCGATGCCAGCAAGCTTGCCCAGCGCTTCGCCCAGGTAGACCCGCCCaaacg > 1:242244/1‑133 (MQ=255) aggCCAGCCGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGGCGGGCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCg < 7:117347/135‑1 (MQ=255) ggCCAGCCGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCCGCGCTTCGACCACGTAGCCCCGACCAAACGCGCCGa > 8:136085/1‑135 (MQ=255) ggCCAGCCGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGCCCCGACCAAAGGCGCCGa > 4:125047/1‑135 (MQ=255) ggCCAGCCGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGa < 8:223977/135‑1 (MQ=255) gCCAGCCGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTTTTGGCTGGCTACAGCGCCGATGACCGCAAGCGGGCCCAGCGGATCGCCCCGGGAGACCCGACCAAACGCGCCgcg > 1:280635/1‑133 (MQ=255) gCCAGCCGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCCGCAAGCTGGCCCCGCGCGTCGCCCAGGTAGCCCCGACCCAAGGCGCCgcg > 7:220366/1‑133 (MQ=255) gCCAGCCGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAg > 1:207760/1‑135 (MQ=255) cAGCCGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCCAGCTGGCCCAGCCCGTCGCCCAGGTAGACCCGCCCAAAGGCGCCGCGCt > 6:82661/1‑135 (MQ=255) gCCGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGCCCAGGTAGACCCGACCAAAGGCGCCGAGCTgg > 3:349749/1‑135 (MQ=255) gCCGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCACCGCTGCCAGCAAGCTGGCCCAGCGCGTCGCCCAGGTAGACCCGACCAAAGGCGCCGCGCggg > 1:318408/1‑135 (MQ=255) ccGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCCCCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCCGCCAGCTGGCCCCGCGCGTCGACCCGGGAGACCCGACCAAAGGCGCCGCGCTGGt > 4:230078/1‑135 (MQ=255) ccGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGCTGCCAGCCAGCTGGCCCAGCGCTTCGCCCCGGTAGCCCCGACCAAAGGCGCCGCGCTGGt > 1:243073/1‑135 (MQ=255) ccGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGCTGCCAGCAAGCTGGCCCCGCGCGTGGACCCGGTAGACCCGCCCCAACGCGCCCAGCgggg > 3:38544/1‑134 (MQ=255) ccGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCCGCCACCAGGGCCAGCGCGTAGCCCCGGTAGACCCGCCCAAAGGCGCCGAGCGGGt > 3:267345/1‑135 (MQ=255) ccGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGt < 8:195379/135‑1 (MQ=255) ccGCAGCCTCAACGAAGGCCGCACCACGCTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGt < 8:312324/135‑1 (MQ=255) cGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCCAGCTGGCCCAGCGCTTCGACCCGGTAGCCCCGACCAAAGGCGCCGCGCTGGTg > 4:380194/1‑135 (MQ=255) cGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCCGTCGGTCTGTTGGCTGGCTACAGCGCCGAAGCCACCCAGCTGGCCCCGCGCGTGGCCCCGGGGGAGCCGCCCAAACGCGCCCCGCGGGTg > 5:117004/1‑135 (MQ=255) aGCCTCTACGACGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGGCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCGGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTgcgc < 5:311381/135‑1 (MQ=255) gacggCCGCACCACGGTCGTCATTCTCACCCCGGTCGGTCTGTTGGCGGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTgg < 4:267345/130‑1 (MQ=255) ggacGCACCTCGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGTTAGACCCCACCAAAGGCGCCTAGCTTGTGCGCAAGCTGGCCGAt < 3:325765/132‑1 (MQ=255) ggCCGCACCACGGGCGGCATTCTCACCCCGGTCGGGCGGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGAt < 8:172848/135‑1 (MQ=255) cGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCCGCGCGTGGCCCCGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGCTGGc > 5:191738/1‑135 (MQ=255) ccacGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCCAGCTGGCCCAGCGCGTCGCCCAGGTAGCCCCGGCCAAAGGCGCCGCGCTGGTGCGCAAGCTGGCCGCTGGcccgc > 7:279365/1‑131 (MQ=255) ccacGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGCCCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCCAGCTGGCCGATGGCAAGc > 8:128464/1‑135 (MQ=255) cacGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCt < 1:243961/135‑1 (MQ=255) cGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGa < 4:363306/135‑1 (MQ=255) cGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGCTGCCCGCAAGCGGGCCCAGCGCGTCGCCCAGGTAGACCCCACCAAAGGCGCCGCGCGGGTGCGCAAGCTGGCCGATGGCAAGCTGaccac > 3:183496/1‑135 (MQ=255) ggCATTCTCACCCCGGTCCGTCTGTTGGCTGGCTACAGCGCCGATGCCAACAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGaccac > 1:90033/1‑134 (MQ=255) ctcACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCCGCAAGCTGGCCCAGCGCTTCCACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGGGCGCAAGCTGGCCGCTGGCCAGCGGCCCCCCCAcccc > 7:172838/1‑133 (MQ=255) cgcggtcggtCTGTTGGCTGGCTACCGCGCCGTGGCCCGCAAGCTGGCCCTGCGATTCGACCAGGTAGACCCGACCAACGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCg < 2:237922/133‑1 (MQ=255) cccGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCg < 2:80125/135‑1 (MQ=255) cccGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCg < 4:181784/135‑1 (MQ=255) ggtcTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGCCCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAgcgc > 8:284512/1‑135 (MQ=255) gtcTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCt > 8:116615/1‑135 (MQ=255) gtcTGTTGGCGGTCTACAGCGCCGATCCCCGCAAGCGGGCCCAGCGATTCGAACAGTTAGACCCGACCAACGGCGCCGAGCTGTTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCCCCACGACCGGCAGCGCt < 2:307715/135‑1 (MQ=255) gtcTGTGGGGTGGAAACAGCGCCTAGGCCCGCAAGCGGGCCCAGCGCTTCGCCCAGTTAGACCCGACCAACGGCGCCGAGCTGGTGCGCAAGCGGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCt < 4:38544/135‑1 (MQ=255) tGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAgcgcgt > 8:110400/1‑131 (MQ=255) tggctACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGCCCCGCCCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCt > 1:42447/1‑135 (MQ=255) ggctACCGCGCCGATGCCCGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGGGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTg < 7:314342/135‑1 (MQ=255) ctACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTg < 4:100640/133‑1 (MQ=255) tACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGCCCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTggcg > 3:227653/1‑135 (MQ=255) ccagccagCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCCGCGCTTGAAGGTGCGGGCGGCATTCCGGCCaa > 5:46733/1‑135 (MQ=255) ccAGCAAGCTGGCCCCGCGCGTCGGCCCGGTAGCCCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACACCACGCCACGCCCGGCGGCGAGTGAAGGTGCTGGCGGCATTCCTGCCaa > 8:280792/1‑135 (MQ=255) ccAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGCCCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCGGACCACCCTCCCCGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCaa > 5:249965/1‑135 (MQ=255) ccAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGCTGGCACGCTGACGACCCTCCACGACCGGCAGCGCGTGAAGGTGCTGGCGGCATTCCGGCCaa > 2:41829/1‑135 (MQ=255) ccAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGCCCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCaa > 3:228464/1‑135 (MQ=255) gCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATcc < 8:205815/135‑1 (MQ=255) gCAAGCTGGCCCAGCGCTTCGACAAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATcc < 4:375519/135‑1 (MQ=255) gCAAGCTGCCCCCGCGCTACGCCCTGGTCGACCCGCCCAACGGCGCCGAGCGGGGGCGCAAGCTGGCCGAGGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATcc < 1:131891/135‑1 (MQ=255) gCAAGCGGGCCCCGCGCTTCGACCAGTTAGACCCGACCAACGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATcc < 2:152861/135‑1 (MQ=255) gCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGa > 3:17324/1‑135 (MQ=255) gtGGCCCAGGGCGTCGACCTGGTACCCCCGAACAACGGCGCCGTGTTGGTGCTCATGCTGGCCGATGGCAAGCTGACCAACCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc < 3:222913/134‑1 (MQ=255) gtGGCCCAGCGCTTCGACCAGGTAGACCAGACCAAAGGCGCCTAGCTGGTGCGAAAGCTGGCCTATGGCAAGCTTACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc < 4:320873/134‑1 (MQ=255) ggggCCCCGCGCTTCGCCCCGTTCCACCCCCCAAACGGCGCCGAGCGGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc < 1:103014/133‑1 (MQ=255) ggggCCCAGGGCTTCGCCCTGGTTGCCCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCGGGCCGATGGCAAGGTGACCACCCTCCACGACCGGCTGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc < 8:269934/133‑1 (MQ=255) cgggCCCTGCGCTTCGACCTGGTACACCCGACAAAACGCGCCGAGCTGTGGCGCAAGGGGGCGGATGGCAAGCGGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGTCCAATCCCGGAc < 7:307674/133‑1 (MQ=255) cgggCCCCGCGTTGCCACCAGTCAGCCCCGACCACAGGCGCCGAGCTGGTGCGCAAGCGGGCCGTTGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc < 5:389263/133‑1 (MQ=255) cgggCCCAGCGCTTCGCCCAGTTAGACCCGACCAAAGGCGCCGAGCGGGTGCGCAAGCTGGCCTATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc < 4:303253/133‑1 (MQ=255) cgggCCCAGCGCTTCGCCCAGGACCCCCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc < 1:205340/133‑1 (MQ=255) cgggCCCAGCGCTTCGACCAGGTACACCCGACAAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCCCCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc < 3:113659/133‑1 (MQ=255) cTGGCCCAGCGGTTCGCCCCGGTCGACCCGACCAACGGCGCCGAGGTGGTGCGCAAGCTGGCCGATGGAAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc < 3:390459/135‑1 (MQ=255) cTGGCCCAGCGCTTCGACCAGGTAGACCGGACCAACGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc < 2:77764/135‑1 (MQ=255) cTGGCCCAGCGCTTCGACCAGGTAGACCCGCCAAACGGCGCCGAGCTGGTGCGCAAGCGGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc < 1:263509/135‑1 (MQ=255) cTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAACGGCGCCGAGCTGGTGCGCAAGCGGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc < 8:195327/135‑1 (MQ=255) cTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc < 8:25447/135‑1 (MQ=255) cTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc < 8:376386/135‑1 (MQ=255) cTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc < 8:63847/135‑1 (MQ=255) cTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc < 6:90477/135‑1 (MQ=255) cTGGCCCAGCGCTTCGACAAGTTGCACCCGACCAACGGCGCCGAGCTGGTGCGCAAGCTGGCCTATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc < 8:319331/135‑1 (MQ=255) tGGCCCTGCGCTTCGACCTGTTAGACCCTACAAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc < 2:77767/134‑1 (MQ=255) tGGCCCAGCGCTGCGCCCCGGTAGACCCGCCCAACGGCGCCGAGCGGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc < 3:125047/134‑1 (MQ=255) gggCCCCGCGCTGCCCCCAGGTAGACCCGACCAACGGCGCCGAGCGGGGGCGCAAGCTGGCCGATGGCAAGCTGACCACCCCCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc < 2:318408/133‑1 (MQ=255) gggCCCAGCGCTTCGCCCCGGTAGACCCCACCAACGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGAAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc < 1:235848/133‑1 (MQ=255) gggCCCAGCGCTGCGACCTGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGGTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc < 2:242244/133‑1 (MQ=255) cccAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGCCCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGCCCAAGCCCGGACGc > 7:269934/1‑133 (MQ=255) cAGCGCTTCGACCAGGTAGCCCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc < 5:361373/129‑1 (MQ=255) cAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc > 6:361373/1‑129 (MQ=255) cAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc < 4:67871/129‑1 (MQ=255) cAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGAc > 3:67871/1‑129 (MQ=255) aGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGACGCCCAg > 6:137469/1‑134 (MQ=255) gcgcTTCTACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGACGCCCAGcc < 8:207264/135‑1 (MQ=255) gcTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGACGCCCAGCCCt < 4:227653/135‑1 (MQ=255) gcTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGACGCCCAGCCCt < 7:116615/135‑1 (MQ=255) ttCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGCCCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGACGCCCAGCCCTgg > 6:258928/1‑135 (MQ=255) tCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCTACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGACGCCCAGCCCTggg < 3:181662/135‑1 (MQ=255) tCGACCAGGTAGACCCGACCAAAGGCGCCGAGCGGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGACGCCCAGCCCTggg < 8:305652/135‑1 (MQ=255) | AGCCTGCAGGCACTGAGCCAGGAGGCCAGCCGCAGCCTCTACGAAGGCCGCACCACGGTCGGCATTCTCACCCCGGTCGGTCTGTTGGCTGGCTACAGCGCCGATGCCAGCAAGCTGGCCCAGCGCTTCGACCAGGTAGACCCGACCAAAGGCGCCGAGCTGGTGCGCAAGCTGGCCGATGGCAAGCTGACCACCCTCCACGACCGGCAGCGCTTGAAGGTGCTGGCGGCATTCCGGCCAATCCCGGACGCCCAGCCCTGGG > KT2440/4029324‑4029585 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |