| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | KT2440 | = 5538907 | 10 (0.310) | 12 (0.370) | 3/248 | 3.6 | 54.9% | intergenic (‑221/+39) | rpsF/CJ019_03622 | 30S ribosomal protein S6/IS110 family transposase ISPpu9 |
| ? | KT2440 | 5539147 = | NA (NA) | intergenic (‑13/+416) | CJ019_03622/rlmB | IS110 family transposase ISPpu9/23S rRNA (guanosine‑2'‑O‑)‑methyltransferaseRlmB | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CACATGAGCGCCTGCCAGCTCGGCAAGGGGCGCAATTGTAGAGAAGCCGGGGCGCACAAGCAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > KT2440/5538773‑5538907‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGC > KT2440/5539147‑5539278 CACATGAGCGCCTGCCAGCTCGGCAAGGGGCGCAATTGTAGAGAAGCCGGGGCGCACAAGCAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCT > 1:113399/1‑135CACATGAGCGCCTGCCAGCTCGGCAAGGGGCGCAATTGTAGAGAAGCCGGGGCGCACAAGCAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCT > 1:137374/1‑135 GGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGC < 8:183730/134‑1 ATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGT < 3:104638/134‑1 TACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAG > 7:117606/1‑135 GGCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCC > 2:193140/1‑135 GCCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCG > 6:174948/1‑135 CCCTTTCGCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGGGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCG > 6:2518/1‑134 GCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCCCTGTTCTTTGTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCCCTCTTGTATTCGTGGTCACAGCCAGCTTTGCCGGCAGGGAT > 8:104486/1‑135 GCGGGTGAACCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGGTACATATTCTATACGTGGTCCCAGCAACCTGTGGCGCCCGGGtt > 8:191909/1‑133 ACCCGCTGCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCG < 3:177929/135‑1 CCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGG < 7:156163/73‑1 CCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGG > 8:156163/1‑73 GCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGC < 3:131114/135‑1 CACATGAGCGCCTGCCAGCTCGGCAAGGGGCGCAATTGTAGAGAAGCCGGGGCGCACAAGCAAGGTGATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > KT2440/5538773‑5538907‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGC > KT2440/5539147‑5539278 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |