mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 121,211 | Δ1 bp | coding (1708/2664 nt) | aceE → | pyruvate dehydrogenase (acetyl‑transferring), homodimeric type |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 274976–275642 | 286962–286347 | 10706–11987 | 46 [44] | [45] 46 | [BW25113_RS01350]–[BW25113_RS01405] | [BW25113_RS01350],BW25113_RS01350,BW25113_RS23265,BW25113_RS01360,yagB,BW25113_RS26050,yagA,yagE,yagF,yagG,yagH,xynR,argF,argL,BW25113_RS23270,BW25113_RS01405,[BW25113_RS01405] |
| * | * | ÷ | NZ_CP009273 | 387279–388428 | 397243 | 8816–9965 | 46 [45] | [0] 96 | [BW25113_RS01920]–[phoA] | [BW25113_RS01920],BW25113_RS01920,BW25113_RS01930,iprA,ampH,sbmA,yaiW,yaiY,yaiZ,ddlA,BW25113_RS25915,iraP,[phoA] |
| * | * | ÷ | NZ_CP009273 | 651593 | 651927 | 335 | 105 [0] | [1] 97 | dcuC/pagP | anaerobic C4‑dicarboxylate transporter DcuC/lipid IV(A) palmitoyltransferase PagP |
| * | * | ÷ | NZ_CP009273 | 3793508 | 3793685 | 178 | 95 [0] | [0] 92 | [waaZ]–[rfaY] | [waaZ],[rfaY] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 269666 = | NA (NA) | 105 (1.210) | 85/496 | 0.1 | 100% | intergenic (+2/+146) | ykfC/BW25113_RS01325 | reverse transcriptase domain‑containing protein/IS5‑like element IS5 family transposase |
| ? | NZ_CP009273 | = 651592 | 0 (0.000) | intergenic (‑168/‑421) | dcuC/pagP | anaerobic C4‑dicarboxylate transporter DcuC/lipid IV(A) palmitoyltransferase PagP | |||||
| * | ? | NZ_CP009273 | 360104 = | 31 (0.360) | 61 (0.700) | 55/496 | 1.3 | 61.0% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 47 (0.540) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | = 388422 | NA (NA) | 93 (1.070) | 84/494 | 0.1 | 100% | intergenic (‑65/‑7) | BW25113_RS01920/BW25113_RS01930 | IS3‑like element IS3 family transposase/autotransporter outer membrane beta‑barrel domain‑containing protein |
| ? | NZ_CP009273 | 397244 = | 0 (0.000) | coding (42/1416 nt) | phoA | alkaline phosphatase | |||||
| * | ? | NZ_CP009273 | 651928 = | 1 (0.010) | 96 (1.100) | 84/496 | 0.1 | 99.0% | intergenic (‑504/‑85) | dcuC/pagP | anaerobic C4‑dicarboxylate transporter DcuC/lipid IV(A) palmitoyltransferase PagP |
| ? | NZ_CP009273 | = 684501 | NA (NA) | intergenic (‑68/+298) | BW25113_RS03405/lnt | IS5‑like element IS5 family transposase/apolipoprotein N‑acyltransferase | |||||
| * | ? | NZ_CP009273 | 1203246 = | 9 (0.100) | 73 (0.900) | 69/464 | 0.3 | 88.8% | coding (290/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | 1205075 = | 10 (0.120) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 9 (0.100) | 62 (0.760) | 58/464 | 0.8 | 87.1% | coding (305/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | = 1205058 | 10 (0.120) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 90 (1.030) | 83/496 | 0.1 | 100% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | 3793686 = | 0 (0.000) | coding (640/699 nt) | rfaY | lipopolysaccharide core heptose(II) kinase RfaY | |||||
| * | ? | NZ_CP009273 | = 3646590 | NA (NA) | 95 (1.090) | 83/496 | 0.1 | 100% | pseudogene (3/379 nt) | BW25113_RS18165 | hypothetical protein |
| ? | NZ_CP009273 | = 3793507 | 0 (0.000) | coding (50/852 nt) | waaZ | 3‑deoxy‑D‑manno‑oct‑2‑ulosonate III transferase WaaZ | |||||