| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,856,024 | 0 | C | G | 36.2% | 38.0 / 17.8 | 48 | pseudogene (940/1617 nt) | BW25113_RS19145 | PTS sugar transporter subunit IIB |
| Reads supporting (aligned to +/- strand): ref base C (13/17); new base G (5/12); total (19/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.45e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATG‑TTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCA‑AACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTTGCGGG‑AATC‑AGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCT‑CAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAGTGGTG > NZ_CP009273/3855783‑3856270 | aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATG‑TTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCA‑AACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTTGCGGG‑AATC‑a < 1:140349/250‑1 (MQ=255) aTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATG‑TTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCA‑AACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTTGCGGG‑AATC‑AGCAAGc < 1:575454/250‑1 (MQ=255) gCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATG‑TTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCA‑AACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTTGCGGG‑AATC‑AGCAAGccc < 2:902945/249‑1 (MQ=255) gCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATG‑TTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCA‑AACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTTGCGGG‑AATC‑AGCAAGccc < 2:545085/249‑1 (MQ=255) gCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATG‑TTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCA‑AACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTTGCGGG‑AATC‑AGCAAGCCCg < 2:384604/250‑1 (MQ=255) gATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATG‑TTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCA‑AACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAGCATGGC‑GGTTAAAGTTTCGGG‑GAAC‑AGCCAGCCCggc > 1:737936/1‑248 (MQ=255) gTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATG‑TTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCA‑AACAGCAACGGTGAAATGAACAGGAAGGCAAATT‑CCAGCGG‑ATCGGTAATTCCCCCCAGCATGGC‑GGTTCAAGCTGCGGG‑GAAC‑AACAAGCCCGCCCCtcttt > 1:262960/1‑249 (MQ=255) atcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATG‑TTTCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCA‑AACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAGCATGGC‑GGCTATAGGTGTGGG‑GATC‑ATCCAACACCCCACCTTTTccccgt > 1:249000/1‑247 (MQ=255) atcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATG‑TTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCA‑AACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAGCATGGCGGGTAAAGGTGGGGGG‑AATA‑ACAAAACCCGCCCATTTTAccggc > 2:670454/1‑247 (MQ=255) gTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATG‑TTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCA‑AACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTTGGGGG‑AATC‑AGCAAGCCCGCCCCTTTTACCCGATTTTCCGGGGCg > 1:409025/1‑250 (MQ=255) ttacagAACACGGGGATCAATTTTTGCGAAAAACCCTAGCAAACAAGCCCTCC‑CCCATGTTTCCCCCCCACACCAAAGAAATAAATCCGGGGCGACATGGGGCCCGCCGGCCGGGGGTGCCCCACA‑AACAGAAAGGGGAAAATGAAGAGGAAGTAAAATC‑CCGGCGG‑TTCGGTAATCCCCCCCAGCAGGGG‑GGTTAGGGTTGGGGG‑AATC‑AGAAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑g < 2:525065/245‑1 (MQ=255) ttGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATG‑TTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCA‑AACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTTGCGGG‑GATC‑AGCAAACCCGCCACTTTTACCCGATTTTCCGGggcggccg > 1:68342/1‑248 (MQ=255) cTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATG‑TTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCA‑AACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGGTGCGGG‑GATC‑AGCAAGCCCGCCACTTTTTCCCGATTTTTCGGTGCGGCG‑GTg > 1:937924/1‑249 (MQ=255) aGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATG‑TTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCA‑AACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAGCATGGC‑GGTTTAAGGTGCGGG‑GAAC‑AGCAAGCCCGCCCCTTTTTCCCCAGTTTTCCGTGCGGCA‑GTGAAGTACATAGCTAAAg > 1:802907/1‑249 (MQ=255) ttGGGGTAAACCCTAGCCAATCAGCCCTCCGCCCATG‑TTCCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGGGTGTACCGCA‑AACAGCAACGGTAAAATGAACAGAAAGGTAAATC‑CCAGCGG‑TTCGGTAATCCCCCCCAGCATGGC‑GTTTAAGGTGGGGGA‑AATC‑AGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAAt < 1:853559/249‑1 (MQ=255) aTCAGACCTCCGCCCATG‑TTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCA‑AACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAGCATGGC‑GGGTAAAGGTTCGGG‑GATT‑AGCAAGCCCCCCCCTTTTTCCCGATTTTTCCGTGCGGCC‑GTGAAGAAAATCGCTCAAGAAATTCCCACGGCCCC‑AAAGAttt > 1:539285/1‑250 (MQ=255) cTCCGCCCATG‑TTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCA‑AACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAGCATGGC‑GGTTAAAGTTGCGGG‑GATC‑AGCAAGCCCCCCCCCTTTACCCGATTTTTCCGGGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCCCGGCACC‑AAAGATTTTTGAGtt > 1:357599/1‑250 (MQ=255) cGCCCATG‑TTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCA‑AACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAGCATGGC‑GGGTTAGGTTGGGGG‑GAAC‑AGCAAACCCCCCCCTTTTATCCCATTTTTCTGCGCGGCAGGGGAAGGAAACCCCAAAAAAAAAACCCCCGGCACC‑AAGAATTTTTGAGtacc > 2:524641/1‑247 (MQ=255) caaTG‑TGGCCCACCACACAAAAGAGATACATTACGGCCGACATTGAGGCCGCCAGCACGGCGTGTACCGAA‑AACAGCAAGGGTAAAATAAACAGGAAGGTAAATC‑CCAGCGG‑TTCGGTAATCCCCACCAGCATGGG‑GGTAAAGGTGGCGGA‑AATC‑AGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTg < 1:190061/248‑1 (MQ=255) ccccacaaAAGAGATACATTACGGCAGACATTGAGCCCGCCAGCCGGGCGTGTCCCGCA‑AACAGCAACGGTAAAAGAAACAGGAAGATAAATC‑CCGGCGG‑TTCGGTAATCCCCCCCAGCAGGGC‑GGTTAAGGTTGCGGG‑AATC‑AGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAAcc < 1:394057/247‑1 (MQ=255) acaccaAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCA‑AACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAGCATGGC‑GGGTAAAGTTGCGGG‑AATC‑AGCAAGCCCGCCACCTTTACCCGAATTTTCGGTGCGGCA‑GAGGAGTACATCGCCAAAAAAAAGCCCACGGCACC‑AAAGATTTTTTAGTTAACGTGCAGGGCAAAAACGc > 1:167659/1‑250 (MQ=255) caAAGAAATACACTACGGTAGACATGGGGCCCGCCAGCAGGGCGTGCACCGAA‑AACAAAAACGGTAAAATAAAAAGGAAGTTAATTT‑CCGGGGG‑TGCGTTATTCCCCACCAGC‑TGGG‑GGTTAAGGGTGGGGGAAAGC‑ACAAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTc < 2:956302/250‑1 (MQ=255) agagATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCA‑AACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAGCATGGC‑GGGTAAAGGTGCGGG‑GAAC‑AGCAAACCCCCCCCCTTTTCCCCCTTTTTCCGTGCGGGA‑GGGAAATACAACGCTAAAGAAAATCCCCCGGCACC‑CAAGATTTTTTAGTTTACGTTCAGGGGCAAAACGCCCTCCgg > 2:369895/1‑250 (MQ=255) gatcaatgaCGCTCGAAATGGGGGCCGCACGAGCGGCGTGACCCGCA‑ACAAGAAGCGGTAAAATGAAAGGGAAGAAAAATC‑CCGGCGG‑TGCGTAAATCCCCCCCAGGGTGGG‑GGTAAGGGTGGGGGA‑AATC‑AGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGaa < 2:271170/242‑1 (MQ=255) tCGACATTGAGGCCGCCAGCACGGCGTGTACCGCA‑AACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAGCATGGC‑GGGTAAAGGTGGGGG‑GATC‑AGCAAACCCGCCACTTTTACCCGATTTTTCGGTGCGGCC‑GGGAAGTACATCGGTAAAAAAAAGGCCCCGGCCCCAAAAAATTTTTGA‑TTACCGGGCAGGGGAAAACCGCCGTCCGGGGACAACAAttttaa > 2:433904/1‑247 (MQ=255) aggggCCGCCAGCGCGG‑GTGTACCCCACATCAGCAACTGTAAAATAAATGGTATGATAAATC‑CCGGCGT‑TTCTGTACCCCCCCCCATCGGGGC‑GTTTATGGTTGCGAA‑AATC‑ACAAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCg < 2:356052/247‑1 (MQ=255) gctttacccGCA‑AAAAGCACGGGTAAAATGAACAGGAAGTTAAATC‑CCAGCGG‑TTCGGTAATCCCCACCAGCATGGC‑GGTTAAGGTTGCGGA‑AATC‑AGAAACCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCT‑CAAACTGAAct < 1:221335/243‑1 (MQ=255) gCGTGCACCACA‑AACAGCAACGGTAAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TGCGTTAACCCCCACCAGCATGGC‑GGTTAGGTTGGCGGG‑AATC‑AGCAACCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCT‑CAAACTGAAct < 2:265016/250‑1 (MQ=255) tACCGCA‑AACAACAACGGTAAAATGAAAAGGAAGGTAAATC‑CCAGCGG‑TTCGGTAATCCCCCCCAGCAGGGC‑GGTTAGGGTTGCGGA‑AACC‑AGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCT‑CAAACTGAACTCTTg < 1:954877/249‑1 (MQ=255) ccGCA‑AACAACAAGGGTAAAATGAACAGGAAGGTAAATC‑CCGGGGG‑TTCGGTATTCCCCACCAGCATGGC‑GGTTAAGGTTGGGGA‑AATC‑AGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCT‑CAAACTGAACTCTTGCa < 1:390459/249‑1 (MQ=255) cGCA‑AACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTTGCGGG‑AATC‑AGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTAAATCGCCAAAAAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCCTCCGGGAACAACGATTTTAGCGGCTCGGCGCC‑CAAACTGAACACTTGCa > 2:446916/1‑248 (MQ=255) cGCA‑AACACAACCGGTAAAAT‑AACAGGAAGGTAAAAT‑CCGGCGGTTTCGGAACCCCCCCCCAGCGT‑GC‑GGGGAAGGTTGCAGG‑AATCAAGCAACCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCT‑CAAACTGAACTCTTGCAGa < 2:673194/250‑1 (MQ=255) aa‑aaCAGCAACGGTAAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATCCCCACCAGCATGGC‑GGTTAGGGTTGCGGG‑AATC‑AGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCT‑CAAACTGAACTCTTGCAGAtg < 1:127349/249‑1 (MQ=255) aCAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTTGCGGG‑AATC‑AGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAAAAATGCCCACGGCACC‑AAAGATTTTTTAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAAAAACGATTTTAGCGGCTCGGCGCT‑CCAACTGAAATCTTGCAGAtgctt > 1:185581/1‑249 (MQ=255) cgtgaaaaTGAA‑AGGAAAGTAAATTCCCGGCGT‑TTCGGTAATCCCCGCCAGCAGGGC‑GTTTAGGGTGGGGGG‑AAAC‑AGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCT‑CAAACTGAACTCTTGCAGATGCTGCGCCCAg < 2:653427/245‑1 (MQ=255) gaaaaaaaaaGGAAGTAAAATC‑CAAGCGG‑TGGGGTAATCCCCCCCAGCAGGGG‑GATGAGGGTGGCGGA‑AAAC‑AGCACGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCT‑CAAACTGAACTCTTGCAGATGCTGCGCCCAGTACa < 1:572222/241‑1 (MQ=255) aaaTGAACAGGAAGTTAAATT‑CCAGCGG‑TTCGGTAATCCCCCCCAGCTGGGC‑GTTAAAGGTTGCGGA‑AATC‑AGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCT‑CAAACTGAACTCTTGCAGATGCTGCGCCCAGTACAt < 1:406522/250‑1 (MQ=255) agcAGGAGGGTAACGC‑CCAGTGG‑TTAGATAATGCCACCCAGCTGGGC‑GGTGAGGGTGGCGGG‑AAAC‑AGAAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCT‑CAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGaa < 2:326599/248‑1 (MQ=255) aagtaaaaTT‑CCGGGGG‑TTGGGTAATCCCCCCCAGCAGGGG‑GGTTAGGGTTGGGGA‑AACA‑AGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCT‑CAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATgccgc < 1:609323/245‑1 (MQ=255) tt‑CCGGCGT‑TTCGTTACTCCCCACCAGC‑CGGG‑GGTTTAGGTTGGGGG‑AAACAAGAAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCT‑CAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACa < 2:465131/250‑1 (MQ=255) ggtacgtaaaTCCCCCCCAACAGGGC‑GGTAAATGTGGGGGT‑AATC‑AGCAACCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCT‑CAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCg < 1:530166/242‑1 (MQ=255) ttCGGTAATTCCCACCAGCATGGC‑GGTTAAGGGTGGGGG‑AATC‑AGCAAGCCCCCCCCTTTTTCCCGATTTTCCGGTGCGGCA‑GGGAAGGACATCGCTAAAGAAATGCCCCCCGCACC‑AAAGATTTTTTAGTTACCGTGGCGGGCAAAACCGCCCTCCGGGAACAACGATTTTCACGGCCCGGCGCTCCAAACCG‑ACCCTTTCCGCAGATGCGCCCAGGACCTCTGAATGCCGCCTTCAAACCCTGCCgcg > 2:418054/1‑248 (MQ=255) cccccccGGCAGGGC‑GGTGAGGGTGGCGAG‑AACC‑AGAAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCT‑CAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATa < 2:409025/249‑1 (MQ=255) cccccaagaaTGGC‑GGTTAGGGTGGGGGG‑ACGC‑AGCAACCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCT‑CAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATaa < 2:201896/241‑1 (MQ=255) ccaGCAGGGG‑GGTTAGGGTGGGGGA‑AATC‑AACAACCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCT‑CAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTg < 1:224436/250‑1 (MQ=255) ggggggTTAAGGTGGGGGA‑AATC‑AGAAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCT‑CAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTa < 1:369895/246‑1 (MQ=255) ggTTAAGGTTGCGGG‑AATC‑AGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCT‑CCAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTTCGtcgctt > 2:71155/1‑245 (MQ=255) ttGCGGG‑AATC‑AGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCT‑CAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAgtggtg > 1:735707/1‑250 (MQ=255) | AACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATG‑TTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCA‑AACAGCAACGGTGAAATGAACAGGAAGGTAAATT‑CCAGCGG‑TTCGGTAATTCCCACCAGCATGGC‑GGTTAAGGTTGCGGG‑AATC‑AGCAAGCCCGCCACTTTTACCCGATTTTCCGGTGCGGCA‑GTGAAGTACATCGCTAAAGAAATGCCCACGGCACC‑AAAGATTTTTGAGTTACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCT‑CAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAGTGGTG > NZ_CP009273/3855783‑3856270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |